Wall clock time and date at job start Tue Mar 31 2020 07:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.53777 * 113.61622 * 247.49693 * 4 3 2 6 6 C 1.53777 * 87.08229 * 220.02067 * 5 4 3 7 7 C 1.50703 * 113.61234 * 139.97997 * 6 5 4 8 8 O 1.21280 * 120.00456 * 262.49951 * 7 6 5 9 9 N 1.34777 * 119.99843 * 82.50498 * 7 6 5 10 10 C 1.46931 * 120.62987 * 359.71936 * 9 7 6 11 11 C 1.52761 * 109.00613 * 233.58294 * 10 9 7 12 12 C 1.53042 * 109.38420 * 305.59035 * 11 10 9 13 13 C 1.53006 * 109.44946 * 181.25671 * 12 11 10 14 14 C 1.50698 * 109.47129 * 64.93270 * 13 12 11 15 15 H 1.07999 * 120.00470 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99693 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00161 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00047 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47218 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47355 * 119.99832 * 18 16 14 21 21 H 1.48496 * 109.47494 * 239.99969 * 18 16 14 22 22 C 1.53034 * 109.53949 * 61.23848 * 12 11 10 23 23 C 1.46923 * 120.63116 * 179.97438 * 9 7 6 24 24 C 1.53781 * 113.61117 * 149.99947 * 4 3 2 25 25 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 26 26 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 28 28 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 29 29 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 30 30 H 1.08994 * 112.85042 * 18.80685 * 4 3 2 31 31 H 1.09004 * 113.61651 * 334.57479 * 5 4 3 32 32 H 1.08999 * 113.61647 * 105.46855 * 5 4 3 33 33 H 1.08995 * 113.69379 * 270.87284 * 6 5 4 34 34 H 1.09000 * 109.58537 * 353.41693 * 10 9 7 35 35 H 1.08994 * 109.58847 * 113.84539 * 10 9 7 36 36 H 1.08998 * 109.56799 * 185.55309 * 11 10 9 37 37 H 1.09008 * 109.36261 * 65.49806 * 11 10 9 38 38 H 1.09006 * 109.45581 * 301.21618 * 12 11 10 39 39 H 1.08998 * 109.46975 * 184.93642 * 13 12 11 40 40 H 1.09004 * 109.46813 * 304.93773 * 13 12 11 41 41 H 0.96998 * 119.99806 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.49677 * 178.68302 * 22 12 11 43 43 H 1.08997 * 109.50014 * 58.59027 * 22 12 11 44 44 H 1.09003 * 109.58539 * 246.15691 * 23 9 7 45 45 H 1.09001 * 109.58711 * 6.43428 * 23 9 7 46 46 H 1.08994 * 113.61653 * 254.53103 * 24 4 3 47 47 H 1.09002 * 113.61215 * 25.35471 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 4.0018 2.0465 1.3024 6 6 4.9896 2.8315 0.4232 7 6 5.2270 4.2431 0.8944 8 8 4.6192 5.1620 0.3874 9 7 6.1149 4.4844 1.8792 10 6 6.8544 3.3810 2.5073 11 6 6.6612 3.4507 4.0210 12 6 7.0613 4.8409 4.5207 13 6 6.8981 4.9024 6.0408 14 6 7.8687 3.9492 6.6892 15 1 8.5356 3.3589 6.0783 16 6 7.9053 3.8308 8.0624 17 7 7.0928 4.5492 8.8063 18 14 9.1089 2.6498 8.8662 19 1 9.9053 1.9643 7.8169 20 1 10.0187 3.4054 9.7643 21 1 8.3592 1.6405 9.6564 22 6 6.1656 5.8965 3.8686 23 6 6.3577 5.8552 2.3489 24 6 3.9488 2.7251 -0.7039 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9280 0.5457 -0.3229 31 1 3.2978 2.6806 1.8414 32 1 4.4806 1.3052 1.9422 33 1 5.9144 2.2933 0.2157 34 1 6.4758 2.4290 2.1354 35 1 7.9150 3.4716 2.2726 36 1 7.2840 2.6975 4.5036 37 1 5.6140 3.2655 4.2606 38 1 8.1015 5.0353 4.2590 39 1 7.0984 5.9163 6.3870 40 1 5.8794 4.6215 6.3085 41 1 7.1184 4.4656 9.7723 42 1 6.4356 6.8841 4.2426 43 1 5.1232 5.6884 4.1095 44 1 7.3770 6.1513 2.1010 45 1 5.6531 6.5355 1.8706 46 1 4.3848 2.5316 -1.6840 47 1 3.2298 3.5443 -0.7147 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567945796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:41 Heat of formation + Delta-G solvation = -84.134684 kcal Electronic energy + Delta-G solvation = -24365.664317 eV Core-core repulsion = 20934.237046 eV Total energy + Delta-G solvation = -3431.427271 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.64483 -38.90632 -37.36011 -36.10404 -33.98692 -32.15810 -31.27850 -30.76735 -28.20585 -26.21947 -25.88642 -24.30441 -23.06437 -22.81672 -21.83534 -20.44562 -19.52065 -18.53285 -17.61394 -16.52323 -16.28870 -15.98548 -15.79178 -15.37226 -14.84673 -14.56074 -14.23040 -13.74033 -13.48354 -13.28749 -13.16493 -12.96930 -12.74498 -12.65318 -12.57990 -12.22250 -11.84950 -11.73908 -11.66391 -11.27114 -11.19335 -11.04384 -10.98689 -10.81074 -10.76947 -10.70430 -10.46449 -10.11844 -9.74866 -9.65269 -9.47159 -9.26672 -8.97569 -8.38274 -8.33035 -6.02021 -4.04152 2.71720 3.11463 3.27972 3.36098 3.38522 3.54837 4.27879 4.37706 4.42998 4.57445 4.59274 4.74917 4.82082 4.94796 5.09033 5.10839 5.18130 5.33061 5.36699 5.42389 5.48910 5.53211 5.55658 5.61101 5.65099 5.69461 5.77097 5.82941 5.84267 5.89061 5.99865 6.07904 6.11263 6.37624 6.39303 6.51864 6.69441 6.95475 6.98275 7.07944 7.09567 7.60271 7.65366 7.79914 7.97875 8.32196 8.39999 9.02659 9.59765 11.09259 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.003336 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.804427 B = 8390.528144 C = 9459.319245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.372 6.372 4 C 0.063 3.937 5 C -0.136 4.136 6 C -0.136 4.136 7 C 0.526 3.474 8 O -0.549 6.549 9 N -0.603 5.603 10 C 0.104 3.896 11 C -0.119 4.119 12 C -0.080 4.080 13 C 0.027 3.973 14 C -0.515 4.515 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.129 4.129 23 C 0.111 3.889 24 C -0.112 4.112 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.016 0.984 40 H 0.015 0.985 41 H 0.259 0.741 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.142 -8.401 -18.452 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.291 6.291 4 C 0.005 3.995 5 C -0.174 4.174 6 C -0.157 4.157 7 C 0.314 3.686 8 O -0.428 6.428 9 N -0.336 5.336 10 C -0.018 4.018 11 C -0.157 4.157 12 C -0.099 4.099 13 C -0.010 4.010 14 C -0.554 4.554 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.167 4.167 23 C -0.011 4.011 24 C -0.150 4.150 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.626 -7.718 -18.535 21.143 hybrid contribution 0.983 -0.925 0.800 1.569 sum -5.643 -8.643 -17.735 20.520 Atomic orbital electron populations 1.21752 0.93854 1.02149 1.03224 1.22515 0.95646 0.84091 0.99945 1.87996 1.20471 1.26129 1.94525 1.23654 0.81284 0.97928 0.96595 1.23445 0.97524 0.99385 0.97079 1.22459 0.99399 0.94420 0.99469 1.20256 0.78595 0.90511 0.79236 1.90654 1.48802 1.46006 1.57304 1.48158 1.40942 1.08600 1.35856 1.21852 0.95961 0.88819 0.95204 1.21824 1.02208 0.99756 0.91927 1.21186 0.97499 0.92213 0.98995 1.19129 0.97104 0.97098 0.87647 1.21267 1.19635 1.23138 0.91334 0.92564 1.25031 0.95835 0.96003 0.97649 1.69977 1.37833 1.40611 1.05008 0.86594 0.81200 0.81033 0.79501 1.19768 1.21093 1.21103 1.22026 1.01036 1.00569 0.93091 1.21674 1.01130 0.82671 0.95621 1.23110 0.97070 0.98067 0.96768 0.91909 0.91217 0.91732 0.93497 0.93284 0.89289 0.88594 0.90208 0.86861 0.90457 0.91643 0.89707 0.92282 0.92379 0.96610 0.96642 0.93093 0.91174 0.92111 0.91893 0.89730 0.90657 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.05 0.46 6.50 37.16 0.24 0.70 16 3 O -0.37 -4.23 10.35 -35.23 -0.36 -4.60 16 4 C 0.06 0.62 4.31 -25.92 -0.11 0.51 16 5 C -0.14 -1.47 7.04 -25.92 -0.18 -1.66 16 6 C -0.14 -1.51 2.72 -90.96 -0.25 -1.76 16 7 C 0.53 7.84 7.22 -10.98 -0.08 7.76 16 8 O -0.55 -10.00 15.31 5.56 0.09 -9.91 16 9 N -0.60 -8.82 2.98 -173.01 -0.52 -9.34 16 10 C 0.10 1.38 6.28 -3.93 -0.02 1.35 16 11 C -0.12 -2.00 5.17 -26.83 -0.14 -2.14 16 12 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 13 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 14 C -0.52 -13.81 8.39 -34.44 -0.29 -14.10 16 15 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 18 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.13 -2.19 5.36 -26.59 -0.14 -2.33 16 23 C 0.11 1.69 6.44 -3.69 -0.02 1.67 16 24 C -0.11 -1.22 7.23 -25.92 -0.19 -1.41 16 25 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.67 7.87 -51.93 -0.41 0.26 16 31 H 0.10 1.25 8.09 -51.93 -0.42 0.83 16 32 H 0.08 0.75 7.95 -51.93 -0.41 0.34 16 33 H 0.11 0.99 7.49 -51.93 -0.39 0.60 16 34 H 0.08 0.84 5.45 -51.93 -0.28 0.55 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.50 6.91 -51.93 -0.36 1.15 16 37 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.08 1.34 7.00 -51.93 -0.36 0.97 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 1.40 7.44 -51.93 -0.39 1.01 16 LS Contribution 369.30 15.07 5.57 5.57 Total: -1.00 -31.70 369.30 -9.18 -40.88 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.45 Total: -1.03 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.22 Total: -11.88 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.22 Total: -35.05 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.28 Total: -14.51 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.70 -9.18 -40.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567945796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.258 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds