Wall clock time and date at job start Tue Mar 31 2020 07:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.53777 * 113.61622 * 247.49693 * 4 3 2 6 6 C 1.53777 * 87.08229 * 220.02067 * 5 4 3 7 7 C 1.50703 * 113.61234 * 139.97997 * 6 5 4 8 8 O 1.21280 * 120.00456 * 262.49951 * 7 6 5 9 9 N 1.34777 * 119.99843 * 82.50498 * 7 6 5 10 10 C 1.46931 * 120.62987 * 359.71936 * 9 7 6 11 11 C 1.52761 * 109.00613 * 233.58294 * 10 9 7 12 12 C 1.53042 * 109.38420 * 305.59035 * 11 10 9 13 13 C 1.53006 * 109.44946 * 181.25671 * 12 11 10 14 14 C 1.50698 * 109.47129 * 64.93270 * 13 12 11 15 15 H 1.07999 * 120.00470 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99693 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00161 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00047 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47218 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47355 * 119.99832 * 18 16 14 21 21 H 1.48496 * 109.47494 * 239.99969 * 18 16 14 22 22 C 1.53034 * 109.53949 * 61.23848 * 12 11 10 23 23 C 1.46923 * 120.63116 * 179.97438 * 9 7 6 24 24 C 1.53781 * 113.61117 * 149.99947 * 4 3 2 25 25 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 26 26 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 28 28 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 29 29 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 30 30 H 1.08994 * 112.85042 * 18.80685 * 4 3 2 31 31 H 1.09004 * 113.61651 * 334.57479 * 5 4 3 32 32 H 1.08999 * 113.61647 * 105.46855 * 5 4 3 33 33 H 1.08995 * 113.69379 * 270.87284 * 6 5 4 34 34 H 1.09000 * 109.58537 * 353.41693 * 10 9 7 35 35 H 1.08994 * 109.58847 * 113.84539 * 10 9 7 36 36 H 1.08998 * 109.56799 * 185.55309 * 11 10 9 37 37 H 1.09008 * 109.36261 * 65.49806 * 11 10 9 38 38 H 1.09006 * 109.45581 * 301.21618 * 12 11 10 39 39 H 1.08998 * 109.46975 * 184.93642 * 13 12 11 40 40 H 1.09004 * 109.46813 * 304.93773 * 13 12 11 41 41 H 0.96998 * 119.99806 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.49677 * 178.68302 * 22 12 11 43 43 H 1.08997 * 109.50014 * 58.59027 * 22 12 11 44 44 H 1.09003 * 109.58539 * 246.15691 * 23 9 7 45 45 H 1.09001 * 109.58711 * 6.43428 * 23 9 7 46 46 H 1.08994 * 113.61653 * 254.53103 * 24 4 3 47 47 H 1.09002 * 113.61215 * 25.35471 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 4.0018 2.0465 1.3024 6 6 4.9896 2.8315 0.4232 7 6 5.2270 4.2431 0.8944 8 8 4.6192 5.1620 0.3874 9 7 6.1149 4.4844 1.8792 10 6 6.8544 3.3810 2.5073 11 6 6.6612 3.4507 4.0210 12 6 7.0613 4.8409 4.5207 13 6 6.8981 4.9024 6.0408 14 6 7.8687 3.9492 6.6892 15 1 8.5356 3.3589 6.0783 16 6 7.9053 3.8308 8.0624 17 7 7.0928 4.5492 8.8063 18 14 9.1089 2.6498 8.8662 19 1 9.9053 1.9643 7.8169 20 1 10.0187 3.4054 9.7643 21 1 8.3592 1.6405 9.6564 22 6 6.1656 5.8965 3.8686 23 6 6.3577 5.8552 2.3489 24 6 3.9488 2.7251 -0.7039 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9280 0.5457 -0.3229 31 1 3.2978 2.6806 1.8414 32 1 4.4806 1.3052 1.9422 33 1 5.9144 2.2933 0.2157 34 1 6.4758 2.4290 2.1354 35 1 7.9150 3.4716 2.2726 36 1 7.2840 2.6975 4.5036 37 1 5.6140 3.2655 4.2606 38 1 8.1015 5.0353 4.2590 39 1 7.0984 5.9163 6.3870 40 1 5.8794 4.6215 6.3085 41 1 7.1184 4.4656 9.7723 42 1 6.4356 6.8841 4.2426 43 1 5.1232 5.6884 4.1095 44 1 7.3770 6.1513 2.1010 45 1 5.6531 6.5355 1.8706 46 1 4.3848 2.5316 -1.6840 47 1 3.2298 3.5443 -0.7147 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567945796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:40 Heat of formation + Delta-G solvation = -102.569316 kcal Electronic energy + Delta-G solvation = -24366.463703 eV Core-core repulsion = 20934.237046 eV Total energy + Delta-G solvation = -3432.226657 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69576 -39.89869 -38.62320 -36.98713 -35.68135 -33.97696 -32.22750 -31.76728 -29.91190 -27.42801 -26.71925 -25.85323 -24.11996 -23.72105 -23.33060 -21.61314 -20.77798 -19.62956 -18.65860 -18.39789 -17.51280 -16.81520 -16.58582 -16.50833 -16.37208 -15.93849 -15.26622 -15.25226 -14.79513 -14.46096 -14.27414 -14.23899 -13.98366 -13.75231 -13.46346 -13.44679 -13.27599 -13.01336 -12.70275 -12.55107 -12.45035 -12.40920 -12.29434 -12.14424 -11.98780 -11.77785 -11.72932 -11.56374 -11.34440 -11.09322 -10.83980 -10.69195 -10.52079 -10.33312 -9.59914 -8.15434 -6.25206 1.42277 1.43151 1.55429 1.58032 2.02576 2.43799 2.82271 3.18592 3.42457 3.53054 3.69584 3.78167 3.91077 3.99683 4.04513 4.16957 4.22641 4.23176 4.30123 4.41364 4.44858 4.54194 4.58165 4.68029 4.71302 4.78497 4.81546 4.87098 4.89630 4.96851 4.98779 5.04819 5.08222 5.11993 5.22109 5.30502 5.32834 5.34991 5.42274 5.55505 5.62038 5.82592 5.90234 6.29339 6.40228 6.46527 6.92173 7.16849 7.43869 8.96920 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.003336 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.804427 B = 8390.528144 C = 9459.319245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.402 6.402 4 C 0.072 3.928 5 C -0.139 4.139 6 C -0.128 4.128 7 C 0.519 3.481 8 O -0.590 6.590 9 N -0.606 5.606 10 C 0.112 3.888 11 C -0.114 4.114 12 C -0.073 4.073 13 C 0.032 3.968 14 C -0.523 4.523 15 H 0.070 0.930 16 C -0.006 4.006 17 N -0.939 5.939 18 Si 0.962 3.038 19 H -0.254 1.254 20 H -0.285 1.285 21 H -0.283 1.283 22 C -0.122 4.122 23 C 0.117 3.883 24 C -0.116 4.116 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.125 0.875 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.152 0.848 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.065 0.935 39 H -0.017 1.017 40 H -0.018 1.018 41 H 0.260 0.740 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.271 -11.330 -20.258 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.028 4.028 3 O -0.322 6.322 4 C 0.014 3.986 5 C -0.177 4.177 6 C -0.149 4.149 7 C 0.309 3.691 8 O -0.471 6.471 9 N -0.337 5.337 10 C -0.010 4.010 11 C -0.152 4.152 12 C -0.091 4.091 13 C -0.005 4.005 14 C -0.561 4.561 15 H 0.088 0.912 16 C -0.203 4.203 17 N -0.581 5.581 18 Si 0.787 3.213 19 H -0.178 1.178 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.160 4.160 23 C -0.006 4.006 24 C -0.154 4.154 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.142 0.858 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.170 0.830 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.002 0.998 40 H 0.001 0.999 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.115 0.885 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.745 -10.665 -20.354 23.464 hybrid contribution 0.323 0.054 1.400 1.438 sum -4.422 -10.610 -18.954 22.168 Atomic orbital electron populations 1.21789 0.93668 1.03276 1.02325 1.22726 0.95962 0.82988 1.01162 1.87976 1.21476 1.28126 1.94584 1.23734 0.80957 0.98649 0.95255 1.23427 0.97143 0.99358 0.97793 1.22595 1.01010 0.92004 0.99314 1.21000 0.77547 0.91824 0.78708 1.90638 1.50070 1.47719 1.58682 1.48273 1.41052 1.08572 1.35827 1.21906 0.97231 0.89776 0.92057 1.21714 1.00992 0.97600 0.94890 1.21038 0.98337 0.94685 0.95070 1.19027 0.94858 0.94820 0.91802 1.21695 1.19625 1.23025 0.91764 0.91177 1.26003 0.97771 0.97894 0.98600 1.70132 1.39961 1.42667 1.05293 0.85445 0.78709 0.78572 0.78609 1.17770 1.21076 1.20886 1.21907 0.99377 0.99930 0.94777 1.21547 1.02001 0.83490 0.93518 1.23079 0.96568 0.97691 0.98089 0.92374 0.89076 0.93076 0.91599 0.92570 0.85773 0.91893 0.88175 0.83039 0.87110 0.89528 0.90234 0.93824 0.91698 0.99829 0.99935 0.93113 0.91251 0.94005 0.89908 0.90628 0.88459 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 10.28 71.98 0.74 -1.37 16 2 C 0.05 0.70 6.50 71.98 0.47 1.17 16 3 O -0.40 -8.67 10.35 -148.98 -1.54 -10.22 16 4 C 0.07 1.22 4.31 31.12 0.13 1.36 16 5 C -0.14 -2.73 7.04 31.12 0.22 -2.51 16 6 C -0.13 -2.49 2.72 -11.01 -0.03 -2.52 16 7 C 0.52 14.83 7.22 87.66 0.63 15.47 16 8 O -0.59 -21.68 15.31 -3.03 -0.05 -21.73 16 9 N -0.61 -16.65 2.98 -819.66 -2.44 -19.09 16 10 C 0.11 2.60 6.28 86.22 0.54 3.14 16 11 C -0.11 -3.67 5.17 30.53 0.16 -3.52 16 12 C -0.07 -2.78 2.10 -10.77 -0.02 -2.80 16 13 C 0.03 1.64 4.45 29.85 0.13 1.77 16 14 C -0.52 -28.14 8.39 25.60 0.21 -27.93 16 15 H 0.07 3.51 7.06 -2.91 -0.02 3.49 16 16 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 17 N -0.94 -57.04 13.29 21.45 0.28 -56.76 16 18 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 19 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 C -0.12 -4.22 5.36 30.68 0.16 -4.05 16 23 C 0.12 3.47 6.44 86.38 0.56 4.03 16 24 C -0.12 -2.32 7.23 31.12 0.23 -2.10 16 25 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 26 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.12 1.27 7.87 -2.39 -0.02 1.25 16 31 H 0.06 1.66 8.09 -2.39 -0.02 1.64 16 32 H 0.10 1.54 7.95 -2.39 -0.02 1.52 16 33 H 0.15 1.83 7.49 -2.39 -0.02 1.81 16 34 H 0.11 1.87 5.45 -2.39 -0.01 1.86 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 2.67 6.91 -2.39 -0.02 2.65 16 37 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.06 2.40 8.14 -2.38 -0.02 2.39 16 39 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 40 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 41 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.08 2.41 7.00 -2.39 -0.02 2.39 16 46 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.07 1.90 7.44 -2.39 -0.02 1.88 16 Total: -1.00 -72.21 369.30 3.80 -68.41 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.92 Total: 14.12 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 4.60 Total: -19.73 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -2.16 Total: -75.85 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -1.59 Total: -31.94 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -72.21 3.80 -68.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567945796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.154 kcal (2) G-P(sol) polarization free energy of solvation -72.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds