Wall clock time and date at job start Tue Mar 31 2020 08:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99959 * 2 1 4 4 C 1.50701 * 110.01741 * 302.27590 * 3 2 1 5 5 O 1.21289 * 119.99728 * 133.46655 * 4 3 2 6 6 N 1.34774 * 120.00165 * 313.47359 * 4 3 2 7 7 C 1.46926 * 120.62952 * 174.24586 * 6 4 3 8 8 C 1.53199 * 108.77104 * 233.58197 * 7 6 4 9 9 C 1.53037 * 109.31482 * 305.36381 * 8 7 6 10 10 C 1.52996 * 109.45966 * 181.38866 * 9 8 7 11 11 C 1.50701 * 109.47157 * 175.00291 * 10 9 8 12 12 H 1.08003 * 120.00114 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00254 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99886 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99742 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47107 * 89.99999 * 15 13 11 17 17 H 1.48498 * 109.46736 * 210.00066 * 15 13 11 18 18 H 1.48504 * 109.46931 * 329.99952 * 15 13 11 19 19 C 1.53036 * 109.53502 * 61.36729 * 9 8 7 20 20 C 1.46929 * 120.62955 * 354.21742 * 6 4 3 21 21 C 1.54262 * 110.03082 * 63.66818 * 3 2 1 22 22 C 1.54964 * 104.16062 * 95.75336 * 21 3 2 23 23 C 1.54891 * 102.77793 * 37.88885 * 22 21 3 24 24 C 1.53873 * 110.03390 * 180.88352 * 3 2 1 25 25 H 1.09004 * 109.47207 * 175.02982 * 1 2 3 26 26 H 1.09006 * 109.46999 * 295.01979 * 1 2 3 27 27 H 1.09001 * 109.47464 * 55.02401 * 1 2 3 28 28 H 1.08998 * 109.58739 * 113.80103 * 7 6 4 29 29 H 1.08993 * 109.58924 * 353.36788 * 7 6 4 30 30 H 1.08997 * 109.49558 * 185.41372 * 8 7 6 31 31 H 1.08996 * 109.49655 * 65.32093 * 8 7 6 32 32 H 1.09002 * 109.46196 * 301.34841 * 9 8 7 33 33 H 1.09002 * 109.46901 * 294.99875 * 10 9 8 34 34 H 1.08991 * 109.47216 * 54.99934 * 10 9 8 35 35 H 0.97004 * 119.99397 * 180.02562 * 14 13 11 36 36 H 1.08992 * 109.50247 * 58.58815 * 19 9 8 37 37 H 1.09008 * 109.49751 * 178.68582 * 19 9 8 38 38 H 1.08993 * 109.58586 * 246.20415 * 20 6 4 39 39 H 1.08999 * 109.58507 * 6.62887 * 20 6 4 40 40 H 1.09002 * 110.48755 * 214.40045 * 21 3 2 41 41 H 1.08997 * 110.48848 * 337.04195 * 21 3 2 42 42 H 1.09002 * 110.72348 * 279.57432 * 22 21 3 43 43 H 1.08997 * 110.76397 * 156.22115 * 22 21 3 44 44 H 1.08990 * 110.48804 * 203.40393 * 23 22 21 45 45 H 1.09001 * 110.48496 * 80.75895 * 23 22 21 46 46 H 1.08998 * 110.03251 * 359.95398 * 24 3 2 47 47 H 1.09007 * 110.03082 * 121.33459 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5292 2.0843 -1.1972 5 8 1.1437 3.2264 -1.0627 6 7 1.5274 1.5117 -2.4172 7 6 0.9460 2.2108 -3.5714 8 6 -0.0857 1.2930 -4.2351 9 6 0.5733 -0.0451 -4.5774 10 6 -0.4448 -0.9517 -5.2718 11 6 0.2348 -2.2205 -5.7185 12 1 1.2875 -2.3658 -5.5260 13 6 -0.4876 -3.1962 -6.3720 14 7 0.1056 -4.3032 -6.7623 15 14 -2.3090 -2.9458 -6.7031 16 1 -2.4861 -2.2825 -8.0198 17 1 -2.9953 -4.2626 -6.7159 18 1 -2.8933 -2.0933 -5.6368 19 6 1.0627 -0.7179 -3.2930 20 6 2.1074 0.1768 -2.6186 21 6 1.6378 2.0497 1.2989 22 6 2.8488 1.8076 2.2350 23 6 4.0530 1.8830 1.2638 24 6 3.5451 1.1992 -0.0223 25 1 -0.3634 -1.0238 -0.0890 26 1 -0.3633 0.4347 0.9313 27 1 -0.3634 0.5891 -0.8420 28 1 1.7325 2.4533 -4.2859 29 1 0.4586 3.1263 -3.2365 30 1 -0.4548 1.7608 -5.1477 31 1 -0.9167 1.1247 -3.5502 32 1 1.4196 0.1265 -5.2426 33 1 -1.2481 -1.1953 -4.5764 34 1 -0.8584 -0.4365 -6.1386 35 1 -0.4026 -4.9895 -7.2224 36 1 0.2209 -0.8674 -2.6170 37 1 1.5110 -1.6816 -3.5351 38 1 2.9886 0.2536 -3.2554 39 1 2.3864 -0.2495 -1.6549 40 1 1.5123 3.1151 1.1056 41 1 0.7299 1.6301 1.7321 42 1 2.7873 0.8229 2.6984 43 1 2.9139 2.5887 2.9925 44 1 4.9067 1.3421 1.6719 45 1 4.3180 2.9214 1.0646 46 1 3.8467 0.1518 -0.0323 47 1 3.9421 1.7101 -0.8995 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567947792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:20 Heat of formation + Delta-G solvation = -95.441594 kcal Electronic energy + Delta-G solvation = -25866.478389 eV Core-core repulsion = 22434.560813 eV Total energy + Delta-G solvation = -3431.917576 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.05001 -38.42622 -37.29199 -35.87556 -34.04631 -32.18442 -30.91111 -29.35392 -28.79690 -28.24435 -26.44700 -24.75978 -22.94617 -22.33853 -20.96079 -20.68141 -19.56510 -18.89687 -17.54090 -16.74654 -16.45540 -16.23958 -15.44707 -15.13747 -14.81307 -14.41523 -14.09663 -14.00687 -13.77325 -13.41026 -13.20622 -13.02865 -12.79066 -12.48907 -12.31410 -12.11559 -11.83785 -11.77139 -11.48094 -11.36985 -11.25427 -11.17688 -11.06786 -10.84519 -10.78612 -10.67627 -10.30862 -10.25680 -9.87770 -9.71644 -9.52224 -9.12413 -9.05255 -8.54470 -8.40618 -6.05339 -4.02583 2.52355 3.03778 3.29069 3.37082 3.40325 3.55175 4.22027 4.36909 4.44075 4.50210 4.84900 5.09787 5.16571 5.21582 5.24663 5.28532 5.33208 5.33464 5.40668 5.43884 5.45916 5.53860 5.58983 5.63672 5.65643 5.71088 5.79960 5.83658 5.87565 5.94619 5.98594 6.08852 6.14985 6.26391 6.32008 6.43739 6.60012 6.79814 6.87075 6.95145 6.99542 7.24071 7.42626 7.53600 7.78917 8.16607 8.52825 8.99478 9.57893 11.07911 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.025859 B = 0.003986 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.531072 B = 7022.658355 C = 7273.420011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.359 6.359 3 C 0.099 3.901 4 C 0.496 3.504 5 O -0.547 6.547 6 N -0.594 5.594 7 C 0.109 3.891 8 C -0.131 4.131 9 C -0.073 4.073 10 C -0.009 4.009 11 C -0.515 4.515 12 H 0.074 0.926 13 C 0.066 3.934 14 N -0.904 5.904 15 Si 0.877 3.123 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.267 1.267 19 C -0.115 4.115 20 C 0.090 3.910 21 C -0.142 4.142 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.110 4.110 25 H 0.094 0.906 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.014 0.986 34 H 0.010 0.990 35 H 0.262 0.738 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.050 11.869 15.924 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.278 6.278 3 C 0.057 3.943 4 C 0.283 3.717 5 O -0.426 6.426 6 N -0.327 5.327 7 C -0.013 4.013 8 C -0.169 4.169 9 C -0.092 4.092 10 C -0.046 4.046 11 C -0.553 4.553 12 H 0.092 0.908 13 C -0.135 4.135 14 N -0.543 5.543 15 Si 0.705 3.295 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.153 4.153 20 C -0.031 4.031 21 C -0.180 4.180 22 C -0.157 4.157 23 C -0.160 4.160 24 C -0.148 4.148 25 H 0.113 0.887 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.032 0.968 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.922 12.120 15.879 20.573 hybrid contribution -1.298 0.065 -0.545 1.409 sum 3.625 12.184 15.334 19.918 Atomic orbital electron populations 1.22914 0.80629 1.03529 1.00323 1.87994 1.20250 1.25212 1.94321 1.22392 0.95444 0.83738 0.92767 1.21155 0.78351 0.87288 0.84890 1.90644 1.48499 1.18147 1.85321 1.48211 1.57820 1.18879 1.07752 1.21681 0.96644 0.95884 0.87080 1.22051 0.97721 0.96993 1.00113 1.21026 0.99065 0.92985 0.96135 1.19609 0.94773 0.95209 0.94992 1.21132 0.97710 0.99827 1.36625 0.90829 1.25019 0.98086 0.95088 0.95266 1.69912 1.36388 1.07748 1.40249 0.86824 0.86205 0.77418 0.79072 1.20411 1.21484 1.19135 1.21852 0.98004 0.99101 0.96352 1.22305 0.96479 0.81429 1.02910 1.22906 0.99065 1.02344 0.93656 1.22458 0.93987 1.01937 0.97289 1.22354 0.98113 1.00817 0.94670 1.22226 0.90329 1.03037 0.99192 0.88719 0.93700 0.93499 0.91651 0.89860 0.91162 0.92300 0.91814 0.96769 0.97144 0.92812 0.92404 0.89323 0.91976 0.87669 0.88809 0.90615 0.91027 0.91222 0.90896 0.91298 0.89102 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.84 101.05 0.99 1.26 16 2 O -0.36 -4.54 7.67 -35.23 -0.27 -4.81 16 3 C 0.10 1.21 0.53 -90.66 -0.05 1.16 16 4 C 0.50 7.33 4.91 -10.99 -0.05 7.28 16 5 O -0.55 -9.46 14.85 5.55 0.08 -9.38 16 6 N -0.59 -8.67 2.81 -172.76 -0.49 -9.16 16 7 C 0.11 1.60 6.42 -3.71 -0.02 1.57 16 8 C -0.13 -2.07 5.36 -26.61 -0.14 -2.21 16 9 C -0.07 -1.36 2.10 -90.58 -0.19 -1.55 16 10 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 11 C -0.52 -14.02 8.94 -34.44 -0.31 -14.32 16 12 H 0.07 2.13 7.30 -52.48 -0.38 1.75 16 13 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 14 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 15 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 19 C -0.12 -1.97 5.19 -26.61 -0.14 -2.11 16 20 C 0.09 1.29 5.60 -3.71 -0.02 1.27 16 21 C -0.14 -1.56 5.78 -25.03 -0.14 -1.71 16 22 C -0.12 -1.04 6.91 -24.70 -0.17 -1.21 16 23 C -0.12 -1.05 6.83 -25.07 -0.17 -1.22 16 24 C -0.11 -1.14 5.10 -25.62 -0.13 -1.27 16 25 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.04 0.47 6.38 -51.93 -0.33 0.14 16 27 H 0.05 0.64 6.73 -51.93 -0.35 0.29 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.24 7.04 -51.93 -0.37 0.88 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 34 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.06 1.00 7.47 -51.93 -0.39 0.61 16 37 H 0.09 1.70 6.91 -51.92 -0.36 1.34 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.11 1.41 3.97 -51.93 -0.21 1.20 16 40 H 0.09 1.16 6.77 -51.93 -0.35 0.81 16 41 H 0.08 0.80 6.09 -51.93 -0.32 0.48 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.89 7.73 -51.93 -0.40 0.49 16 47 H 0.08 0.81 7.67 -51.93 -0.40 0.41 16 LS Contribution 348.55 15.07 5.25 5.25 Total: -1.00 -30.88 348.55 -8.07 -38.95 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -8.01 Total: 0.47 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.74 Total: -11.57 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.29 Total: -35.72 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.19 Total: -14.19 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.88 -8.07 -38.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567947792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.493 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds