Wall clock time and date at job start Tue Mar 31 2020 08:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99959 * 2 1 4 4 C 1.50701 * 110.01741 * 302.27590 * 3 2 1 5 5 O 1.21289 * 119.99728 * 133.46655 * 4 3 2 6 6 N 1.34774 * 120.00165 * 313.47359 * 4 3 2 7 7 C 1.46926 * 120.62952 * 174.24586 * 6 4 3 8 8 C 1.53199 * 108.77104 * 233.58197 * 7 6 4 9 9 C 1.53037 * 109.31482 * 305.36381 * 8 7 6 10 10 C 1.52996 * 109.45966 * 181.38866 * 9 8 7 11 11 C 1.50701 * 109.47157 * 175.00291 * 10 9 8 12 12 H 1.08003 * 120.00114 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00254 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99886 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99742 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47107 * 89.99999 * 15 13 11 17 17 H 1.48498 * 109.46736 * 210.00066 * 15 13 11 18 18 H 1.48504 * 109.46931 * 329.99952 * 15 13 11 19 19 C 1.53036 * 109.53502 * 61.36729 * 9 8 7 20 20 C 1.46929 * 120.62955 * 354.21742 * 6 4 3 21 21 C 1.54262 * 110.03082 * 63.66818 * 3 2 1 22 22 C 1.54964 * 104.16062 * 95.75336 * 21 3 2 23 23 C 1.54891 * 102.77793 * 37.88885 * 22 21 3 24 24 C 1.53873 * 110.03390 * 180.88352 * 3 2 1 25 25 H 1.09004 * 109.47207 * 175.02982 * 1 2 3 26 26 H 1.09006 * 109.46999 * 295.01979 * 1 2 3 27 27 H 1.09001 * 109.47464 * 55.02401 * 1 2 3 28 28 H 1.08998 * 109.58739 * 113.80103 * 7 6 4 29 29 H 1.08993 * 109.58924 * 353.36788 * 7 6 4 30 30 H 1.08997 * 109.49558 * 185.41372 * 8 7 6 31 31 H 1.08996 * 109.49655 * 65.32093 * 8 7 6 32 32 H 1.09002 * 109.46196 * 301.34841 * 9 8 7 33 33 H 1.09002 * 109.46901 * 294.99875 * 10 9 8 34 34 H 1.08991 * 109.47216 * 54.99934 * 10 9 8 35 35 H 0.97004 * 119.99397 * 180.02562 * 14 13 11 36 36 H 1.08992 * 109.50247 * 58.58815 * 19 9 8 37 37 H 1.09008 * 109.49751 * 178.68582 * 19 9 8 38 38 H 1.08993 * 109.58586 * 246.20415 * 20 6 4 39 39 H 1.08999 * 109.58507 * 6.62887 * 20 6 4 40 40 H 1.09002 * 110.48755 * 214.40045 * 21 3 2 41 41 H 1.08997 * 110.48848 * 337.04195 * 21 3 2 42 42 H 1.09002 * 110.72348 * 279.57432 * 22 21 3 43 43 H 1.08997 * 110.76397 * 156.22115 * 22 21 3 44 44 H 1.08990 * 110.48804 * 203.40393 * 23 22 21 45 45 H 1.09001 * 110.48496 * 80.75895 * 23 22 21 46 46 H 1.08998 * 110.03251 * 359.95398 * 24 3 2 47 47 H 1.09007 * 110.03082 * 121.33459 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5292 2.0843 -1.1972 5 8 1.1437 3.2264 -1.0627 6 7 1.5274 1.5117 -2.4172 7 6 0.9460 2.2108 -3.5714 8 6 -0.0857 1.2930 -4.2351 9 6 0.5733 -0.0451 -4.5774 10 6 -0.4448 -0.9517 -5.2718 11 6 0.2348 -2.2205 -5.7185 12 1 1.2875 -2.3658 -5.5260 13 6 -0.4876 -3.1962 -6.3720 14 7 0.1056 -4.3032 -6.7623 15 14 -2.3090 -2.9458 -6.7031 16 1 -2.4861 -2.2825 -8.0198 17 1 -2.9953 -4.2626 -6.7159 18 1 -2.8933 -2.0933 -5.6368 19 6 1.0627 -0.7179 -3.2930 20 6 2.1074 0.1768 -2.6186 21 6 1.6378 2.0497 1.2989 22 6 2.8488 1.8076 2.2350 23 6 4.0530 1.8830 1.2638 24 6 3.5451 1.1992 -0.0223 25 1 -0.3634 -1.0238 -0.0890 26 1 -0.3633 0.4347 0.9313 27 1 -0.3634 0.5891 -0.8420 28 1 1.7325 2.4533 -4.2859 29 1 0.4586 3.1263 -3.2365 30 1 -0.4548 1.7608 -5.1477 31 1 -0.9167 1.1247 -3.5502 32 1 1.4196 0.1265 -5.2426 33 1 -1.2481 -1.1953 -4.5764 34 1 -0.8584 -0.4365 -6.1386 35 1 -0.4026 -4.9895 -7.2224 36 1 0.2209 -0.8674 -2.6170 37 1 1.5110 -1.6816 -3.5351 38 1 2.9886 0.2536 -3.2554 39 1 2.3864 -0.2495 -1.6549 40 1 1.5123 3.1151 1.1056 41 1 0.7299 1.6301 1.7321 42 1 2.7873 0.8229 2.6984 43 1 2.9139 2.5887 2.9925 44 1 4.9067 1.3421 1.6719 45 1 4.3180 2.9214 1.0646 46 1 3.8467 0.1518 -0.0323 47 1 3.9421 1.7101 -0.8995 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567947792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:19 Heat of formation + Delta-G solvation = -113.284354 kcal Electronic energy + Delta-G solvation = -25867.252109 eV Core-core repulsion = 22434.560813 eV Total energy + Delta-G solvation = -3432.691296 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.12623 -39.56806 -38.55500 -36.74942 -35.66715 -34.08246 -32.19643 -30.58368 -29.89638 -29.38843 -27.42741 -26.27519 -24.23837 -23.76724 -22.08863 -21.69702 -20.85774 -20.07120 -18.89884 -18.57045 -17.52525 -17.24852 -16.48655 -16.33039 -16.19143 -15.75975 -15.35305 -15.18264 -15.08256 -14.89013 -14.45887 -14.21178 -14.14616 -13.99300 -13.51625 -13.38953 -13.12956 -12.85126 -12.73095 -12.72215 -12.42282 -12.17955 -12.13172 -12.05556 -11.97976 -11.88530 -11.72244 -11.51075 -11.36362 -11.29477 -11.11551 -10.94078 -10.71430 -10.22615 -9.65428 -8.24771 -6.26219 1.35442 1.37324 1.37710 1.48200 1.91134 2.37828 2.61285 3.10907 3.24888 3.53910 3.59804 3.92192 3.98098 4.05587 4.15884 4.19486 4.26765 4.31630 4.38032 4.41489 4.46769 4.56954 4.59606 4.63075 4.72539 4.75362 4.84369 4.85700 4.86773 4.93186 4.97332 5.05779 5.07513 5.15633 5.17821 5.21523 5.25319 5.34259 5.39201 5.44912 5.58805 5.71827 5.74232 5.96830 6.34510 6.37203 6.81110 7.00402 7.37538 8.91523 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.025859 B = 0.003986 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.531072 B = 7022.658355 C = 7273.420011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.364 6.364 3 C 0.098 3.902 4 C 0.495 3.505 5 O -0.574 6.574 6 N -0.596 5.596 7 C 0.112 3.888 8 C -0.120 4.120 9 C -0.070 4.070 10 C -0.006 4.006 11 C -0.515 4.515 12 H 0.041 0.959 13 C 0.005 3.995 14 N -0.951 5.951 15 Si 0.942 3.058 16 H -0.270 1.270 17 H -0.287 1.287 18 H -0.251 1.251 19 C -0.109 4.109 20 C 0.102 3.898 21 C -0.142 4.142 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.112 4.112 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.028 0.972 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.013 0.987 34 H 0.014 0.986 35 H 0.263 0.737 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.760 13.074 17.268 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.283 6.283 3 C 0.055 3.945 4 C 0.283 3.717 5 O -0.455 6.455 6 N -0.327 5.327 7 C -0.010 4.010 8 C -0.159 4.159 9 C -0.089 4.089 10 C -0.043 4.043 11 C -0.553 4.553 12 H 0.059 0.941 13 C -0.191 4.191 14 N -0.592 5.592 15 Si 0.766 3.234 16 H -0.195 1.195 17 H -0.213 1.213 18 H -0.174 1.174 19 C -0.147 4.147 20 C -0.019 4.019 21 C -0.180 4.180 22 C -0.151 4.151 23 C -0.156 4.156 24 C -0.150 4.150 25 H 0.120 0.880 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.135 0.865 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.116 0.884 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.638 13.338 17.231 22.278 hybrid contribution -1.157 -0.324 -0.970 1.544 sum 3.481 13.014 16.261 21.117 Atomic orbital electron populations 1.22959 0.80415 1.03794 1.00344 1.87983 1.20548 1.25468 1.94260 1.22535 0.96563 0.83356 0.92033 1.21653 0.77566 0.87112 0.85373 1.90629 1.49681 1.19454 1.85717 1.48260 1.57743 1.18759 1.07976 1.21653 0.96688 0.95415 0.87284 1.21930 0.97683 0.95517 1.00721 1.20933 0.97921 0.93806 0.96217 1.19565 0.95427 0.94018 0.95302 1.21443 0.96591 1.01526 1.35732 0.94071 1.25907 1.02999 0.94813 0.95386 1.70059 1.38384 1.08964 1.41841 0.85786 0.80415 0.77621 0.79560 1.19540 1.21328 1.17433 1.21718 0.98587 0.98420 0.95965 1.22186 0.95544 0.80835 1.03357 1.22902 1.00410 1.01086 0.93612 1.22464 0.92674 1.02829 0.97117 1.22372 0.98643 1.00943 0.93635 1.22296 0.88839 1.03681 1.00138 0.88021 0.92138 0.95352 0.90426 0.89906 0.89972 0.92643 0.92464 0.96875 0.96801 0.92763 0.92612 0.91944 0.91130 0.86495 0.90396 0.90354 0.90362 0.89775 0.88968 0.91260 0.88429 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.84 113.37 1.12 1.59 16 2 O -0.36 -8.64 7.67 -148.98 -1.14 -9.78 16 3 C 0.10 2.24 0.53 -10.82 -0.01 2.23 16 4 C 0.49 14.07 4.91 87.66 0.43 14.50 16 5 O -0.57 -19.42 14.85 -3.06 -0.05 -19.46 16 6 N -0.60 -16.67 2.81 -818.89 -2.30 -18.97 16 7 C 0.11 3.10 6.42 86.36 0.55 3.65 16 8 C -0.12 -3.63 5.36 30.67 0.16 -3.47 16 9 C -0.07 -2.56 2.10 -10.77 -0.02 -2.58 16 10 C -0.01 -0.26 3.52 29.85 0.10 -0.16 16 11 C -0.51 -28.50 8.94 25.60 0.23 -28.27 16 12 H 0.04 2.48 7.30 -2.91 -0.02 2.46 16 13 C 0.01 0.31 5.47 84.66 0.46 0.77 16 14 N -0.95 -58.83 13.96 21.45 0.30 -58.53 16 15 Si 0.94 44.03 27.47 68.60 1.88 45.91 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 18 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 19 C -0.11 -3.72 5.19 30.67 0.16 -3.56 16 20 C 0.10 2.83 5.60 86.36 0.48 3.31 16 21 C -0.14 -2.90 5.78 31.69 0.18 -2.72 16 22 C -0.11 -1.68 6.91 31.91 0.22 -1.46 16 23 C -0.12 -1.72 6.83 31.67 0.22 -1.51 16 24 C -0.11 -2.09 5.10 31.32 0.16 -1.93 16 25 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.06 1.17 6.38 -2.38 -0.02 1.15 16 27 H 0.03 0.74 6.73 -2.39 -0.02 0.73 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 2.36 7.04 -2.39 -0.02 2.34 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 34 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 35 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.06 1.91 7.47 -2.39 -0.02 1.89 16 37 H 0.06 2.46 6.91 -2.38 -0.02 2.44 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.12 2.99 3.97 -2.39 -0.01 2.98 16 40 H 0.08 1.86 6.77 -2.39 -0.02 1.84 16 41 H 0.08 1.52 6.09 -2.39 -0.01 1.51 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.10 1.69 7.73 -2.39 -0.02 1.67 16 47 H 0.07 1.41 7.67 -2.38 -0.02 1.39 16 Total: -1.00 -66.67 348.55 4.03 -62.63 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.88 Total: 17.80 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 4.46 Total: -19.61 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -2.00 Total: -77.50 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -1.19 Total: -29.24 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Total: -66.67 4.03 -62.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567947792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.651 kcal (2) G-P(sol) polarization free energy of solvation -66.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds