Wall clock time and date at job start Tue Mar 31 2020 07:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47592 * 2 1 4 4 C 1.53003 * 109.46913 * 239.99619 * 2 1 3 5 5 C 1.53002 * 109.47088 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46722 * 60.00754 * 5 4 2 7 7 C 1.53000 * 109.47139 * 299.99789 * 6 5 4 8 8 H 1.09002 * 109.46834 * 299.99822 * 7 6 5 9 9 O 1.42895 * 109.47412 * 180.02562 * 7 6 5 10 10 C 1.42904 * 113.99937 * 89.99607 * 9 7 6 11 11 C 1.50705 * 109.47175 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99743 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00385 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00182 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46769 * 181.04856 * 14 13 11 16 16 C 1.50692 * 115.55357 * 39.68174 * 15 14 13 17 17 H 1.08009 * 120.00175 * 264.53397 * 16 15 14 18 18 C 1.37874 * 120.00518 * 84.53416 * 16 15 14 19 19 N 1.31521 * 119.99693 * 352.91723 * 18 16 15 20 20 Si 1.86794 * 120.00576 * 172.91661 * 18 16 15 21 21 H 1.48506 * 109.46970 * 60.00012 * 20 18 16 22 22 H 1.48497 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47206 * 300.00250 * 20 18 16 24 24 C 1.53007 * 117.49540 * 253.97013 * 15 14 13 25 25 C 1.52998 * 117.49533 * 185.35095 * 15 14 13 26 26 C 1.53002 * 109.47282 * 59.99926 * 7 6 5 27 27 H 1.08998 * 109.47124 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46836 * 299.99913 * 1 2 3 29 29 H 1.08992 * 109.47241 * 59.99543 * 1 2 3 30 30 H 1.09001 * 109.46607 * 60.00628 * 4 2 1 31 31 H 1.08998 * 109.47418 * 300.00056 * 4 2 1 32 32 H 1.08996 * 109.46997 * 179.97438 * 5 4 2 33 33 H 1.08993 * 109.47307 * 300.00927 * 5 4 2 34 34 H 1.08998 * 109.47465 * 59.99798 * 6 5 4 35 35 H 1.09000 * 109.47063 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47236 * 300.00320 * 10 9 7 37 37 H 1.08994 * 109.46908 * 60.00643 * 10 9 7 38 38 H 0.97006 * 119.99865 * 0.02562 * 13 11 10 39 39 H 1.08994 * 109.46866 * 301.04560 * 14 13 11 40 40 H 1.08993 * 109.47198 * 61.04649 * 14 13 11 41 41 H 0.96999 * 120.00107 * 185.03686 * 19 18 16 42 42 H 1.08996 * 117.49809 * 359.97438 * 24 15 14 43 43 H 1.09001 * 117.49569 * 145.02674 * 24 15 14 44 44 H 1.09000 * 117.49837 * 214.97812 * 25 15 14 45 45 H 1.09001 * 117.50291 * 359.97438 * 25 15 14 46 46 H 1.09001 * 109.47153 * 180.02562 * 26 7 6 47 47 H 1.08998 * 109.46803 * 60.00308 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7208 -1.2496 6 6 4.0804 -1.4418 -0.0004 7 6 3.5705 -0.7206 1.2489 8 1 3.9336 0.3072 1.2487 9 8 4.0477 -1.3936 2.4157 10 6 5.3073 -0.9129 2.8896 11 6 5.7122 -1.6897 4.1159 12 8 4.9931 -2.5686 4.5419 13 7 6.8737 -1.4083 4.7388 14 6 7.2676 -2.1638 5.9306 15 6 8.6038 -1.6320 6.4529 16 6 8.7737 -0.1357 6.3989 17 1 9.2788 0.3206 5.5602 18 6 8.2846 0.6511 7.4200 19 7 7.5499 0.1142 8.3696 20 14 8.6652 2.4795 7.4548 21 1 8.1351 3.1190 6.2238 22 1 8.0272 3.0954 8.6460 23 1 10.1353 2.6779 7.5219 24 6 9.8466 -2.4935 6.2199 25 6 9.2504 -2.3746 7.6239 26 6 2.0405 -0.7210 1.2492 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6766 -0.2074 -2.1392 31 1 1.6766 -1.7490 -1.2492 32 1 3.9332 -1.2351 -2.1393 33 1 3.9330 0.3069 -1.2497 34 1 3.7174 -2.4696 -0.0001 35 1 5.1704 -1.4419 -0.0008 36 1 6.0610 -1.0421 2.1128 37 1 5.2216 0.1442 3.1406 38 1 7.4490 -0.7056 4.3979 39 1 6.5051 -2.0501 6.7011 40 1 7.3711 -3.2181 5.6746 41 1 7.1452 0.6781 9.0471 42 1 9.7121 -3.4393 5.6949 43 1 10.7874 -1.9780 6.0273 44 1 9.7990 -1.7809 8.3550 45 1 8.7237 -3.2417 8.0225 46 1 1.6772 -0.2068 2.1390 47 1 1.6775 -1.7488 1.2495 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569998059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:29 Heat of formation + Delta-G solvation = -90.951386 kcal Electronic energy + Delta-G solvation = -24010.571934 eV Core-core repulsion = 20578.849068 eV Total energy + Delta-G solvation = -3431.722866 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.62398 -38.74134 -36.89377 -36.28541 -33.18797 -32.51334 -32.04636 -30.39088 -28.04970 -26.61597 -25.76505 -24.76324 -22.57147 -21.39637 -21.17773 -20.15925 -19.70129 -19.27695 -16.80268 -16.74313 -15.87808 -15.71697 -15.39769 -14.85911 -14.79449 -14.55499 -14.46480 -14.03443 -13.77873 -13.31504 -13.06894 -12.85586 -12.66705 -12.60488 -12.23019 -12.01036 -11.92246 -11.64169 -11.53010 -11.20952 -11.09868 -11.04703 -10.95419 -10.71780 -10.58415 -10.55002 -10.45829 -10.25260 -9.66900 -9.43018 -9.17090 -8.94051 -8.55085 -8.34553 -7.93218 -6.13121 -4.23213 3.21394 3.25430 3.29212 3.29596 3.30808 4.25825 4.31273 4.46052 4.53767 4.75466 4.90333 4.96370 5.03624 5.14074 5.22963 5.24634 5.27807 5.29345 5.36691 5.43446 5.47720 5.50695 5.53544 5.61760 5.75543 5.81106 5.86206 5.95439 6.03381 6.03821 6.05803 6.16468 6.25949 6.30196 6.48035 6.55705 6.70918 6.90636 7.08097 7.20792 7.29765 7.38661 7.50764 7.74980 8.29630 8.41650 8.78673 8.99472 9.44331 10.94497 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.003108 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.966541 B = 9006.636276 C = 9629.299316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.143 4.143 7 C 0.088 3.912 8 H 0.060 0.940 9 O -0.355 6.355 10 C 0.045 3.955 11 C 0.503 3.497 12 O -0.543 6.543 13 N -0.694 5.694 14 C 0.167 3.833 15 C 0.028 3.972 16 C -0.508 4.508 17 H 0.061 0.939 18 C 0.078 3.922 19 N -0.869 5.869 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.211 4.211 25 C -0.152 4.152 26 C -0.111 4.111 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.404 0.596 39 H 0.068 0.932 40 H 0.037 0.963 41 H 0.263 0.737 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.166 1.102 -17.466 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.089 0.911 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.180 4.180 7 C 0.030 3.970 8 H 0.078 0.922 9 O -0.273 6.273 10 C -0.035 4.035 11 C 0.287 3.713 12 O -0.421 6.421 13 N -0.345 5.345 14 C 0.043 3.957 15 C 0.028 3.972 16 C -0.545 4.545 17 H 0.079 0.921 18 C -0.128 4.128 19 N -0.504 5.504 20 Si 0.717 3.283 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.248 4.248 25 C -0.190 4.190 26 C -0.148 4.148 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.240 0.760 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.836 0.347 -16.829 19.011 hybrid contribution 0.687 1.603 -0.065 1.745 sum -8.149 1.950 -16.894 18.858 Atomic orbital electron populations 1.21810 0.94910 1.01985 1.01679 1.21103 0.95696 0.99550 0.94452 0.91143 1.21640 0.95460 1.00909 0.97382 1.21491 0.95693 1.00693 0.97553 1.22060 1.00847 1.00748 0.94384 1.22138 0.94713 0.95246 0.84941 0.92210 1.88050 1.35121 1.60322 1.43857 1.22279 0.87390 0.98172 0.95676 1.20091 0.82014 0.84389 0.84786 1.90667 1.52360 1.32546 1.66491 1.45850 1.20654 1.38729 1.29288 1.20855 0.97805 0.91541 0.85470 1.19022 0.87318 0.93146 0.97748 1.20261 1.39166 0.88822 1.06297 0.92127 1.24994 0.94524 0.98327 0.94936 1.69971 1.30598 1.35420 1.14392 0.86707 0.78753 0.85210 0.77592 1.20208 1.21253 1.20138 1.23089 0.99676 1.00863 1.01158 1.22501 1.04294 1.01322 0.90912 1.21634 0.93380 1.01937 0.97886 0.92556 0.92521 0.92694 0.91984 0.91748 0.91722 0.91951 0.90979 0.91771 0.90907 0.90547 0.75982 0.91422 0.94513 0.92697 0.91572 0.90388 0.89908 0.91643 0.91140 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 2 C -0.09 -0.75 2.72 -90.62 -0.25 -0.99 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.12 -0.90 5.20 -26.73 -0.14 -1.04 16 5 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 6 C -0.14 -1.46 5.54 -26.73 -0.15 -1.61 16 7 C 0.09 1.04 2.61 -26.73 -0.07 0.97 16 8 H 0.06 0.64 7.78 -51.93 -0.40 0.24 16 9 O -0.36 -5.75 9.52 -55.14 -0.53 -6.28 16 10 C 0.04 0.69 6.23 36.01 0.22 0.91 16 11 C 0.50 10.14 7.91 -10.99 -0.09 10.05 16 12 O -0.54 -13.18 16.50 -14.36 -0.24 -13.42 16 13 N -0.69 -14.12 5.33 -60.30 -0.32 -14.44 16 14 C 0.17 3.81 5.75 -4.04 -0.02 3.79 16 15 C 0.03 0.66 1.71 -155.66 -0.27 0.40 16 16 C -0.51 -12.65 7.43 -34.45 -0.26 -12.91 16 17 H 0.06 1.46 7.82 -52.48 -0.41 1.05 16 18 C 0.08 2.00 5.39 -17.82 -0.10 1.90 16 19 N -0.87 -23.75 12.97 55.43 0.72 -23.03 16 20 Si 0.89 19.95 29.55 -169.99 -5.02 14.92 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 C -0.21 -4.38 9.88 -26.73 -0.26 -4.65 16 25 C -0.15 -3.46 9.51 -26.73 -0.25 -3.72 16 26 C -0.11 -1.20 4.86 -26.73 -0.13 -1.33 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 36 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 37 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 38 H 0.40 7.60 7.45 -40.82 -0.30 7.29 16 39 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.04 0.82 7.94 -51.93 -0.41 0.40 16 41 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 42 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 43 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 44 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 45 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -29.90 378.40 -9.92 -39.82 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -8.67 Total: 6.78 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.57 Total: -10.07 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.40 Total: -37.47 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.76 Total: -19.69 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.90 -9.92 -39.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569998059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.129 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds