Wall clock time and date at job start Tue Mar 31 2020 07:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47592 * 2 1 4 4 C 1.53003 * 109.46913 * 239.99619 * 2 1 3 5 5 C 1.53002 * 109.47088 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46722 * 60.00754 * 5 4 2 7 7 C 1.53000 * 109.47139 * 299.99789 * 6 5 4 8 8 H 1.09002 * 109.46834 * 299.99822 * 7 6 5 9 9 O 1.42895 * 109.47412 * 180.02562 * 7 6 5 10 10 C 1.42904 * 113.99937 * 89.99607 * 9 7 6 11 11 C 1.50705 * 109.47175 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99743 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00385 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00182 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46769 * 181.04856 * 14 13 11 16 16 C 1.50692 * 115.55357 * 39.68174 * 15 14 13 17 17 H 1.08009 * 120.00175 * 264.53397 * 16 15 14 18 18 C 1.37874 * 120.00518 * 84.53416 * 16 15 14 19 19 N 1.31521 * 119.99693 * 352.91723 * 18 16 15 20 20 Si 1.86794 * 120.00576 * 172.91661 * 18 16 15 21 21 H 1.48506 * 109.46970 * 60.00012 * 20 18 16 22 22 H 1.48497 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47206 * 300.00250 * 20 18 16 24 24 C 1.53007 * 117.49540 * 253.97013 * 15 14 13 25 25 C 1.52998 * 117.49533 * 185.35095 * 15 14 13 26 26 C 1.53002 * 109.47282 * 59.99926 * 7 6 5 27 27 H 1.08998 * 109.47124 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46836 * 299.99913 * 1 2 3 29 29 H 1.08992 * 109.47241 * 59.99543 * 1 2 3 30 30 H 1.09001 * 109.46607 * 60.00628 * 4 2 1 31 31 H 1.08998 * 109.47418 * 300.00056 * 4 2 1 32 32 H 1.08996 * 109.46997 * 179.97438 * 5 4 2 33 33 H 1.08993 * 109.47307 * 300.00927 * 5 4 2 34 34 H 1.08998 * 109.47465 * 59.99798 * 6 5 4 35 35 H 1.09000 * 109.47063 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47236 * 300.00320 * 10 9 7 37 37 H 1.08994 * 109.46908 * 60.00643 * 10 9 7 38 38 H 0.97006 * 119.99865 * 0.02562 * 13 11 10 39 39 H 1.08994 * 109.46866 * 301.04560 * 14 13 11 40 40 H 1.08993 * 109.47198 * 61.04649 * 14 13 11 41 41 H 0.96999 * 120.00107 * 185.03686 * 19 18 16 42 42 H 1.08996 * 117.49809 * 359.97438 * 24 15 14 43 43 H 1.09001 * 117.49569 * 145.02674 * 24 15 14 44 44 H 1.09000 * 117.49837 * 214.97812 * 25 15 14 45 45 H 1.09001 * 117.50291 * 359.97438 * 25 15 14 46 46 H 1.09001 * 109.47153 * 180.02562 * 26 7 6 47 47 H 1.08998 * 109.46803 * 60.00308 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7208 -1.2496 6 6 4.0804 -1.4418 -0.0004 7 6 3.5705 -0.7206 1.2489 8 1 3.9336 0.3072 1.2487 9 8 4.0477 -1.3936 2.4157 10 6 5.3073 -0.9129 2.8896 11 6 5.7122 -1.6897 4.1159 12 8 4.9931 -2.5686 4.5419 13 7 6.8737 -1.4083 4.7388 14 6 7.2676 -2.1638 5.9306 15 6 8.6038 -1.6320 6.4529 16 6 8.7737 -0.1357 6.3989 17 1 9.2788 0.3206 5.5602 18 6 8.2846 0.6511 7.4200 19 7 7.5499 0.1142 8.3696 20 14 8.6652 2.4795 7.4548 21 1 8.1351 3.1190 6.2238 22 1 8.0272 3.0954 8.6460 23 1 10.1353 2.6779 7.5219 24 6 9.8466 -2.4935 6.2199 25 6 9.2504 -2.3746 7.6239 26 6 2.0405 -0.7210 1.2492 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6766 -0.2074 -2.1392 31 1 1.6766 -1.7490 -1.2492 32 1 3.9332 -1.2351 -2.1393 33 1 3.9330 0.3069 -1.2497 34 1 3.7174 -2.4696 -0.0001 35 1 5.1704 -1.4419 -0.0008 36 1 6.0610 -1.0421 2.1128 37 1 5.2216 0.1442 3.1406 38 1 7.4490 -0.7056 4.3979 39 1 6.5051 -2.0501 6.7011 40 1 7.3711 -3.2181 5.6746 41 1 7.1452 0.6781 9.0471 42 1 9.7121 -3.4393 5.6949 43 1 10.7874 -1.9780 6.0273 44 1 9.7990 -1.7809 8.3550 45 1 8.7237 -3.2417 8.0225 46 1 1.6772 -0.2068 2.1390 47 1 1.6775 -1.7488 1.2495 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569998059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:28 Heat of formation + Delta-G solvation = -106.967944 kcal Electronic energy + Delta-G solvation = -24011.266464 eV Core-core repulsion = 20578.849068 eV Total energy + Delta-G solvation = -3432.417396 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.84730 -40.01905 -38.50215 -37.50139 -34.92709 -34.00045 -33.21594 -31.31530 -29.43050 -27.63744 -27.28982 -26.42419 -23.33155 -22.94702 -22.16700 -21.52905 -21.17644 -20.63138 -18.41410 -18.03523 -17.47455 -16.97789 -16.62810 -16.50265 -16.04778 -15.74421 -15.53481 -15.22294 -15.09630 -14.63382 -14.30817 -14.14653 -13.94324 -13.58240 -13.48433 -13.33441 -13.27869 -12.92204 -12.76779 -12.74261 -12.40176 -12.37231 -12.02028 -11.96157 -11.83152 -11.48997 -11.41564 -11.30614 -11.27045 -10.92887 -10.72994 -10.44943 -10.41354 -10.12182 -9.72524 -8.09201 -6.23990 1.45032 1.48158 1.53981 1.69008 1.99089 2.43314 3.03670 3.20216 3.46964 3.73216 3.78617 3.92570 4.03038 4.15814 4.18935 4.23999 4.26660 4.28296 4.33887 4.52450 4.53209 4.54203 4.66249 4.68246 4.73241 4.77633 4.85467 4.99484 5.00473 5.04852 5.08043 5.09803 5.15234 5.26125 5.30365 5.30837 5.39957 5.41265 5.46654 5.57514 5.61868 5.70390 5.77152 6.20611 6.37328 6.80065 6.86433 7.40084 7.46845 8.98088 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.003108 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.966541 B = 9006.636276 C = 9629.299316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 H 0.078 0.922 4 C -0.115 4.115 5 C -0.112 4.112 6 C -0.140 4.140 7 C 0.081 3.919 8 H 0.076 0.924 9 O -0.389 6.389 10 C 0.054 3.946 11 C 0.497 3.503 12 O -0.592 6.592 13 N -0.689 5.689 14 C 0.179 3.821 15 C 0.006 3.994 16 C -0.508 4.508 17 H 0.070 0.930 18 C 0.030 3.970 19 N -0.906 5.906 20 Si 0.950 3.050 21 H -0.263 1.263 22 H -0.296 1.296 23 H -0.272 1.272 24 C -0.179 4.179 25 C -0.164 4.164 26 C -0.111 4.111 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.414 0.586 39 H 0.025 0.975 40 H 0.040 0.960 41 H 0.258 0.742 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 2.565 -20.217 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.097 0.903 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.178 4.178 7 C 0.024 3.976 8 H 0.094 0.906 9 O -0.309 6.309 10 C -0.025 4.025 11 C 0.284 3.716 12 O -0.473 6.473 13 N -0.340 5.340 14 C 0.054 3.946 15 C 0.005 3.995 16 C -0.546 4.546 17 H 0.088 0.912 18 C -0.172 4.172 19 N -0.543 5.543 20 Si 0.776 3.224 21 H -0.188 1.188 22 H -0.222 1.222 23 H -0.197 1.197 24 C -0.216 4.216 25 C -0.203 4.203 26 C -0.149 4.149 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.251 0.749 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.075 1.833 -19.620 21.296 hybrid contribution 0.445 1.090 0.795 1.420 sum -7.630 2.923 -18.825 20.522 Atomic orbital electron populations 1.21809 0.94314 1.01963 1.02246 1.21089 0.96183 0.99597 0.93420 0.90336 1.21644 0.95317 1.00723 0.97575 1.21486 0.95777 1.01066 0.96642 1.22038 1.01016 1.00047 0.94691 1.22410 0.95105 0.95941 0.84112 0.90603 1.88019 1.35486 1.61606 1.45749 1.22244 0.88264 0.97899 0.94110 1.21005 0.81005 0.83879 0.85700 1.90640 1.53637 1.34863 1.68133 1.45758 1.21148 1.38666 1.28450 1.20532 0.96468 0.92158 0.85425 1.19102 0.88448 0.93119 0.98819 1.20588 1.38148 0.89705 1.06162 0.91169 1.25714 0.94460 1.02240 0.94775 1.70119 1.32202 1.36650 1.15297 0.85743 0.78468 0.80644 0.77564 1.18761 1.22218 1.19727 1.23089 0.98539 1.00992 0.98966 1.22441 1.04969 1.01354 0.91488 1.21664 0.93027 1.01300 0.98889 0.92918 0.92876 0.91206 0.90245 0.92334 0.90597 0.90900 0.92469 0.91426 0.87462 0.88425 0.74868 0.95611 0.94184 0.93274 0.89362 0.89452 0.91773 0.91312 0.92334 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.19 71.98 0.66 -1.30 16 2 C -0.08 -1.26 2.72 -10.79 -0.03 -1.29 16 3 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.12 -1.50 5.20 30.60 0.16 -1.34 16 5 C -0.11 -1.50 5.92 30.60 0.18 -1.32 16 6 C -0.14 -2.63 5.54 30.60 0.17 -2.46 16 7 C 0.08 1.82 2.61 30.59 0.08 1.90 16 8 H 0.08 1.44 7.78 -2.39 -0.02 1.42 16 9 O -0.39 -12.38 9.52 -129.94 -1.24 -13.61 16 10 C 0.05 1.57 6.23 71.24 0.44 2.01 16 11 C 0.50 19.96 7.91 87.66 0.69 20.65 16 12 O -0.59 -29.47 16.50 15.98 0.26 -29.21 16 13 N -0.69 -27.70 5.33 -463.07 -2.47 -30.17 16 14 C 0.18 8.28 5.75 86.38 0.50 8.78 16 15 C 0.01 0.27 1.71 -52.93 -0.09 0.18 16 16 C -0.51 -24.86 7.43 25.60 0.19 -24.67 16 17 H 0.07 3.23 7.82 -2.91 -0.02 3.21 16 18 C 0.03 1.52 5.39 84.65 0.46 1.97 16 19 N -0.91 -50.51 12.97 21.45 0.28 -50.23 16 20 Si 0.95 40.47 29.55 68.60 2.03 42.50 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 22 H -0.30 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 C -0.18 -7.10 9.88 30.60 0.30 -6.80 16 25 C -0.16 -7.48 9.51 30.59 0.29 -7.19 16 26 C -0.11 -2.35 4.86 30.60 0.15 -2.20 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.21 7.87 -2.39 -0.02 1.19 16 36 H 0.11 2.37 7.87 -2.39 -0.02 2.35 16 37 H 0.10 2.42 8.08 -2.39 -0.02 2.40 16 38 H 0.41 14.92 7.45 -92.70 -0.69 14.23 16 39 H 0.03 1.39 8.14 -2.39 -0.02 1.38 16 40 H 0.04 1.80 7.94 -2.39 -0.02 1.78 16 41 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 42 H 0.09 3.12 8.08 -2.39 -0.02 3.10 16 43 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 44 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 45 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -65.66 378.40 3.25 -62.41 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.23 Total: 31.38 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 4.15 Total: -13.07 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -2.19 Total: -80.40 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -0.97 Total: -42.82 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -65.66 3.25 -62.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569998059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.558 kcal (2) G-P(sol) polarization free energy of solvation -65.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds