Wall clock time and date at job start Tue Mar 31 2020 07:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50703 * 119.99458 * 2 1 4 4 N 1.46492 * 109.47261 * 125.00271 * 3 2 1 5 5 C 1.46501 * 120.00097 * 269.99656 * 4 3 2 6 6 C 1.50692 * 109.47236 * 270.00126 * 5 4 3 7 7 H 1.08002 * 120.00099 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00360 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99643 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00383 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47183 * 89.99874 * 10 8 6 12 12 H 1.48497 * 109.47344 * 210.00006 * 10 8 6 13 13 H 1.48502 * 109.47016 * 330.00162 * 10 8 6 14 14 C 1.34778 * 120.00174 * 89.99272 * 4 3 2 15 15 O 1.21281 * 120.00058 * 180.02562 * 14 4 3 16 16 C 1.50693 * 120.00038 * 0.02562 * 14 4 3 17 17 O 1.42904 * 109.47318 * 179.97438 * 16 14 4 18 18 C 1.42905 * 113.99890 * 179.97438 * 17 16 14 19 19 H 1.08993 * 109.47057 * 329.99844 * 18 17 16 20 20 C 1.52999 * 109.46735 * 90.00446 * 18 17 16 21 21 C 1.53006 * 109.46626 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47127 * 299.99539 * 21 20 18 23 23 C 1.53002 * 109.46817 * 60.00361 * 22 21 20 24 24 H 1.08996 * 109.47407 * 60.00219 * 23 22 21 25 25 C 1.52997 * 109.46817 * 180.02562 * 23 22 21 26 26 C 1.52996 * 109.46972 * 299.99733 * 23 22 21 27 27 H 1.07993 * 120.00407 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99766 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00022 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47077 * 4.99644 * 3 2 1 31 31 H 1.09003 * 109.46259 * 244.99953 * 3 2 1 32 32 H 1.09002 * 109.46829 * 29.99750 * 5 4 3 33 33 H 1.09002 * 109.47267 * 149.99608 * 5 4 3 34 34 H 0.97003 * 119.99494 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.47625 * 59.99914 * 16 14 4 36 36 H 1.09003 * 109.47121 * 299.99833 * 16 14 4 37 37 H 1.08993 * 109.47839 * 59.99877 * 20 18 17 38 38 H 1.09000 * 109.47160 * 299.99439 * 20 18 17 39 39 H 1.09001 * 109.46801 * 59.99811 * 21 20 18 40 40 H 1.09001 * 109.46998 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.47153 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.46952 * 300.00302 * 22 21 20 43 43 H 1.09000 * 109.47611 * 60.00257 * 25 23 22 44 44 H 1.09001 * 109.47289 * 179.97438 * 25 23 22 45 45 H 1.09002 * 109.47153 * 299.99769 * 25 23 22 46 46 H 1.09001 * 109.46993 * 180.02562 * 26 23 22 47 47 H 1.09000 * 109.47380 * 299.99696 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1313 5 6 2.5588 1.8651 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3038 3.8371 1.6366 8 6 2.5183 4.0669 3.6080 9 7 1.9590 3.4661 4.6356 10 14 2.8726 5.8997 3.6771 11 1 1.7003 6.6503 3.1597 12 1 3.1359 6.3004 5.0826 13 1 4.0631 6.2055 2.8439 14 6 4.2497 0.8664 0.9823 15 8 5.0197 0.8882 1.9191 16 6 4.6972 0.3185 -0.3483 17 8 6.0576 -0.1089 -0.2543 18 6 6.5825 -0.6487 -1.4689 19 1 5.7772 -1.1129 -2.0381 20 6 7.2105 0.4745 -2.2965 21 6 7.7731 -0.1035 -3.5967 22 6 8.8377 -1.1526 -3.2698 23 6 8.2096 -2.2758 -2.4421 24 1 7.4046 -2.7403 -3.0116 25 6 9.2743 -3.3246 -2.1147 26 6 7.6471 -1.6978 -1.1420 27 1 -0.5400 0.9352 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3584 2.1316 0.0895 31 1 2.6212 1.4026 -0.9314 32 1 1.4887 1.6968 2.5458 33 1 3.0990 1.3605 3.2259 34 1 1.7301 3.9748 5.4291 35 1 4.6126 1.0953 -1.1082 36 1 4.0681 -0.5283 -0.6227 37 1 8.0158 0.9387 -1.7273 38 1 6.4522 1.2221 -2.5290 39 1 6.9680 -0.5680 -4.1661 40 1 8.2202 0.6967 -4.1865 41 1 9.2388 -1.5641 -4.1961 42 1 9.6427 -0.6882 -2.7004 43 1 10.0791 -2.8599 -1.5450 44 1 8.8271 -4.1245 -1.5247 45 1 9.6755 -3.7364 -3.0407 46 1 7.2000 -2.4980 -0.5522 47 1 8.4521 -1.2334 -0.5725 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574346599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:40 Heat of formation + Delta-G solvation = -85.068127 kcal Electronic energy + Delta-G solvation = -24280.640598 eV Core-core repulsion = 20849.172849 eV Total energy + Delta-G solvation = -3431.467748 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.64364 -38.80938 -36.59940 -35.55732 -33.19151 -32.48914 -32.06603 -30.37726 -28.47520 -26.63603 -26.49632 -25.30169 -22.66698 -22.48827 -21.35123 -20.07630 -19.95712 -18.48070 -16.91986 -16.43989 -16.27039 -15.62392 -15.47617 -15.06073 -14.81794 -14.60220 -14.44030 -14.09936 -13.97332 -13.36578 -13.06412 -12.93420 -12.63495 -12.57807 -12.19952 -12.05897 -11.96860 -11.68785 -11.59679 -11.26315 -11.17849 -11.10056 -11.03433 -10.87923 -10.69556 -10.59091 -10.51991 -10.42678 -10.16585 -9.63215 -9.39236 -9.20716 -8.81622 -8.41498 -7.68811 -6.02295 -4.06975 2.41615 3.31294 3.33473 3.38573 3.42546 3.45356 4.23492 4.45928 4.48423 4.55637 4.75672 4.91460 4.94015 5.05141 5.08475 5.22089 5.25904 5.28837 5.30813 5.32246 5.36934 5.41088 5.44709 5.48160 5.52656 5.62873 5.65427 5.77501 5.82717 5.88122 5.97600 5.98825 6.07143 6.07865 6.16408 6.18630 6.28393 6.76569 6.87974 7.03695 7.31205 7.46882 7.56885 7.94427 8.25167 8.39431 8.92264 9.10717 9.57953 11.05868 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.017005 B = 0.003426 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.195854 B = 8171.885771 C = 8953.698461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 C 0.135 3.865 4 N -0.594 5.594 5 C 0.249 3.751 6 C -0.527 4.527 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.506 3.494 15 O -0.518 6.518 16 C 0.045 3.955 17 O -0.355 6.355 18 C 0.089 3.911 19 H 0.058 0.942 20 C -0.144 4.144 21 C -0.116 4.116 22 C -0.117 4.117 23 C -0.089 4.089 24 H 0.069 0.931 25 C -0.147 4.147 26 C -0.111 4.111 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 -11.332 -18.772 22.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.190 4.190 3 C 0.011 3.989 4 N -0.327 5.327 5 C 0.130 3.870 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.291 3.709 15 O -0.393 6.393 16 C -0.035 4.035 17 O -0.273 6.273 18 C 0.030 3.970 19 H 0.076 0.924 20 C -0.181 4.181 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.107 4.107 24 H 0.088 0.912 25 C -0.204 4.204 26 C -0.149 4.149 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.015 -11.255 -17.874 22.256 hybrid contribution -0.185 1.032 -0.171 1.062 sum 6.830 -10.222 -18.044 21.834 Atomic orbital electron populations 1.23823 0.95810 1.01807 1.00382 1.23437 0.96465 0.98989 1.00080 1.20603 0.93247 0.95486 0.89578 1.48184 1.10067 1.60673 1.13762 1.19282 0.95383 0.93746 0.78564 1.21439 1.40492 0.93312 1.01325 0.92437 1.24934 0.95073 0.98784 0.95307 1.69938 1.42085 1.36138 1.05172 0.86496 0.78588 0.84966 0.77376 1.20672 1.21076 1.19861 1.19959 0.82612 0.79227 0.89080 1.90697 1.52247 1.54905 1.41469 1.22400 0.84506 0.99180 0.97383 1.88078 1.25211 1.81265 1.32713 1.22120 0.95549 0.93447 0.85840 0.92420 1.22066 1.01342 0.98405 0.96325 1.21488 0.98499 0.98426 0.96957 1.21641 0.98194 0.95953 0.99631 1.21094 0.97977 0.95724 0.95930 0.91215 1.21814 0.98718 0.98505 1.01355 1.21636 0.98290 0.97653 0.97291 0.88218 0.88755 0.87831 0.89222 0.91014 0.94831 0.93835 0.92725 0.91129 0.91195 0.90870 0.91779 0.92040 0.91718 0.91999 0.91707 0.92519 0.92555 0.92712 0.91216 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 14.32 29.01 0.42 -1.88 16 2 C -0.17 -2.39 9.74 -36.03 -0.35 -2.74 16 3 C 0.13 2.17 5.65 -5.20 -0.03 2.14 16 4 N -0.59 -12.77 2.44 -176.44 -0.43 -13.20 16 5 C 0.25 6.62 5.16 -5.20 -0.03 6.59 16 6 C -0.53 -15.12 9.39 -34.44 -0.32 -15.45 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 10 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.51 11.09 7.75 -10.99 -0.09 11.01 16 15 O -0.52 -14.05 16.08 -14.35 -0.23 -14.28 16 16 C 0.05 0.73 4.78 36.00 0.17 0.90 16 17 O -0.35 -6.04 9.52 -55.14 -0.52 -6.56 16 18 C 0.09 1.08 2.61 -26.73 -0.07 1.01 16 19 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16 20 C -0.14 -1.57 5.54 -26.73 -0.15 -1.72 16 21 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 22 C -0.12 -0.93 5.20 -26.73 -0.14 -1.07 16 23 C -0.09 -0.74 2.72 -90.62 -0.25 -0.99 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 26 C -0.11 -1.22 4.85 -26.73 -0.13 -1.35 16 27 H 0.10 1.25 7.84 -52.49 -0.41 0.83 16 28 H 0.09 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.10 1.37 7.83 -52.49 -0.41 0.96 16 30 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 31 H 0.07 0.95 6.44 -51.93 -0.33 0.61 16 32 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.07 0.98 7.13 -51.93 -0.37 0.61 16 36 H 0.07 0.93 7.72 -51.93 -0.40 0.53 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.70 7.87 -51.93 -0.41 0.30 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 380.04 15.07 5.73 5.73 Total: -1.00 -34.02 380.04 -9.18 -43.21 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.56 Total: -2.07 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.88 Total: -3.76 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.31 Total: -39.35 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.76 Total: -20.84 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.02 -9.18 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574346599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.859 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds