Wall clock time and date at job start Tue Mar 31 2020 07:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50703 * 119.99458 * 2 1 4 4 N 1.46492 * 109.47261 * 125.00271 * 3 2 1 5 5 C 1.46501 * 120.00097 * 269.99656 * 4 3 2 6 6 C 1.50692 * 109.47236 * 270.00126 * 5 4 3 7 7 H 1.08002 * 120.00099 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00360 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99643 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00383 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47183 * 89.99874 * 10 8 6 12 12 H 1.48497 * 109.47344 * 210.00006 * 10 8 6 13 13 H 1.48502 * 109.47016 * 330.00162 * 10 8 6 14 14 C 1.34778 * 120.00174 * 89.99272 * 4 3 2 15 15 O 1.21281 * 120.00058 * 180.02562 * 14 4 3 16 16 C 1.50693 * 120.00038 * 0.02562 * 14 4 3 17 17 O 1.42904 * 109.47318 * 179.97438 * 16 14 4 18 18 C 1.42905 * 113.99890 * 179.97438 * 17 16 14 19 19 H 1.08993 * 109.47057 * 329.99844 * 18 17 16 20 20 C 1.52999 * 109.46735 * 90.00446 * 18 17 16 21 21 C 1.53006 * 109.46626 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47127 * 299.99539 * 21 20 18 23 23 C 1.53002 * 109.46817 * 60.00361 * 22 21 20 24 24 H 1.08996 * 109.47407 * 60.00219 * 23 22 21 25 25 C 1.52997 * 109.46817 * 180.02562 * 23 22 21 26 26 C 1.52996 * 109.46972 * 299.99733 * 23 22 21 27 27 H 1.07993 * 120.00407 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99766 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00022 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47077 * 4.99644 * 3 2 1 31 31 H 1.09003 * 109.46259 * 244.99953 * 3 2 1 32 32 H 1.09002 * 109.46829 * 29.99750 * 5 4 3 33 33 H 1.09002 * 109.47267 * 149.99608 * 5 4 3 34 34 H 0.97003 * 119.99494 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.47625 * 59.99914 * 16 14 4 36 36 H 1.09003 * 109.47121 * 299.99833 * 16 14 4 37 37 H 1.08993 * 109.47839 * 59.99877 * 20 18 17 38 38 H 1.09000 * 109.47160 * 299.99439 * 20 18 17 39 39 H 1.09001 * 109.46801 * 59.99811 * 21 20 18 40 40 H 1.09001 * 109.46998 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.47153 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.46952 * 300.00302 * 22 21 20 43 43 H 1.09000 * 109.47611 * 60.00257 * 25 23 22 44 44 H 1.09001 * 109.47289 * 179.97438 * 25 23 22 45 45 H 1.09002 * 109.47153 * 299.99769 * 25 23 22 46 46 H 1.09001 * 109.46993 * 180.02562 * 26 23 22 47 47 H 1.09000 * 109.47380 * 299.99696 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1313 5 6 2.5588 1.8651 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3038 3.8371 1.6366 8 6 2.5183 4.0669 3.6080 9 7 1.9590 3.4661 4.6356 10 14 2.8726 5.8997 3.6771 11 1 1.7003 6.6503 3.1597 12 1 3.1359 6.3004 5.0826 13 1 4.0631 6.2055 2.8439 14 6 4.2497 0.8664 0.9823 15 8 5.0197 0.8882 1.9191 16 6 4.6972 0.3185 -0.3483 17 8 6.0576 -0.1089 -0.2543 18 6 6.5825 -0.6487 -1.4689 19 1 5.7772 -1.1129 -2.0381 20 6 7.2105 0.4745 -2.2965 21 6 7.7731 -0.1035 -3.5967 22 6 8.8377 -1.1526 -3.2698 23 6 8.2096 -2.2758 -2.4421 24 1 7.4046 -2.7403 -3.0116 25 6 9.2743 -3.3246 -2.1147 26 6 7.6471 -1.6978 -1.1420 27 1 -0.5400 0.9352 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3584 2.1316 0.0895 31 1 2.6212 1.4026 -0.9314 32 1 1.4887 1.6968 2.5458 33 1 3.0990 1.3605 3.2259 34 1 1.7301 3.9748 5.4291 35 1 4.6126 1.0953 -1.1082 36 1 4.0681 -0.5283 -0.6227 37 1 8.0158 0.9387 -1.7273 38 1 6.4522 1.2221 -2.5290 39 1 6.9680 -0.5680 -4.1661 40 1 8.2202 0.6967 -4.1865 41 1 9.2388 -1.5641 -4.1961 42 1 9.6427 -0.6882 -2.7004 43 1 10.0791 -2.8599 -1.5450 44 1 8.8271 -4.1245 -1.5247 45 1 9.6755 -3.7364 -3.0407 46 1 7.2000 -2.4980 -0.5522 47 1 8.4521 -1.2334 -0.5725 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574346599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:39 Heat of formation + Delta-G solvation = -104.499330 kcal Electronic energy + Delta-G solvation = -24281.483198 eV Core-core repulsion = 20849.172849 eV Total energy + Delta-G solvation = -3432.310349 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.97809 -40.03914 -37.70964 -37.13106 -35.13166 -33.68734 -33.21711 -31.41468 -30.13552 -28.08248 -27.28125 -26.85855 -24.58686 -23.32958 -22.16553 -21.24154 -20.80375 -19.99782 -18.67718 -18.16572 -17.72154 -16.95622 -16.86510 -16.38520 -15.97636 -15.74706 -15.64479 -15.25204 -15.10782 -14.48989 -14.36627 -14.14637 -14.01341 -13.73685 -13.38570 -13.30046 -13.27217 -12.99748 -12.89056 -12.73621 -12.58531 -12.42430 -12.25743 -12.19781 -11.95907 -11.83105 -11.69232 -11.40964 -11.29737 -11.26919 -10.65359 -10.59463 -10.41711 -10.30724 -9.51494 -8.23628 -6.38490 1.30330 1.35500 1.39097 1.49290 1.73528 2.05467 2.37905 2.96232 3.06251 3.61898 3.75368 3.81709 3.98476 4.04259 4.10056 4.16201 4.22382 4.24689 4.28638 4.29624 4.45150 4.52958 4.54035 4.65893 4.78203 4.83681 4.85533 4.96915 5.00376 5.05497 5.08813 5.09842 5.14901 5.20547 5.30413 5.30779 5.40191 5.41644 5.49389 5.58234 5.71252 5.74659 5.94005 6.04560 6.21840 6.67746 6.73120 7.26178 7.43158 8.83873 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.017005 B = 0.003426 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.195854 B = 8171.885771 C = 8953.698461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.187 4.187 3 C 0.130 3.870 4 N -0.596 5.596 5 C 0.265 3.735 6 C -0.545 4.545 7 H 0.054 0.946 8 C 0.007 3.993 9 N -0.928 5.928 10 Si 0.969 3.031 11 H -0.260 1.260 12 H -0.281 1.281 13 H -0.274 1.274 14 C 0.494 3.506 15 O -0.587 6.587 16 C 0.060 3.940 17 O -0.393 6.393 18 C 0.083 3.917 19 H 0.083 0.917 20 C -0.143 4.143 21 C -0.110 4.110 22 C -0.116 4.116 23 C -0.082 4.082 24 H 0.083 0.917 25 C -0.146 4.146 26 C -0.112 4.112 27 H 0.099 0.901 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.026 0.974 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.054 0.946 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.046 -11.520 -22.004 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.206 4.206 3 C 0.008 3.992 4 N -0.327 5.327 5 C 0.144 3.856 6 C -0.583 4.583 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.568 5.568 10 Si 0.793 3.207 11 H -0.185 1.185 12 H -0.206 1.206 13 H -0.199 1.199 14 C 0.282 3.718 15 O -0.467 6.467 16 C -0.019 4.019 17 O -0.312 6.312 18 C 0.026 3.974 19 H 0.101 0.899 20 C -0.181 4.181 21 C -0.148 4.148 22 C -0.154 4.154 23 C -0.101 4.101 24 H 0.102 0.898 25 C -0.204 4.204 26 C -0.149 4.149 27 H 0.118 0.882 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.044 0.956 33 H 0.012 0.988 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.487 -11.457 -21.170 24.930 hybrid contribution -0.068 1.041 0.851 1.346 sum 6.420 -10.416 -20.319 23.719 Atomic orbital electron populations 1.24063 0.95502 1.02948 0.97933 1.23330 0.96868 0.98189 1.02209 1.20906 0.92798 0.96656 0.88806 1.48169 1.11240 1.59861 1.13458 1.18704 0.93931 0.92713 0.80223 1.21710 1.40671 0.94373 1.01566 0.92788 1.25877 0.94612 1.03904 0.94779 1.70060 1.42790 1.38143 1.05781 0.85397 0.78901 0.78941 0.77461 1.18514 1.20649 1.19869 1.21095 0.81828 0.78132 0.90739 1.90654 1.54076 1.57700 1.44229 1.22306 0.84964 1.01039 0.93567 1.88053 1.25603 1.81892 1.35701 1.22415 0.96380 0.94015 0.84613 0.89944 1.22061 1.00694 0.98087 0.97239 1.21475 0.99000 0.98780 0.95530 1.21651 0.97830 0.95663 1.00213 1.21079 0.98525 0.95995 0.94488 0.89827 1.21814 0.98290 0.98199 1.02054 1.21673 0.97471 0.97129 0.98657 0.88242 0.86485 0.86694 0.90083 0.87405 0.95646 0.98843 0.92370 0.88281 0.87587 0.93061 0.91672 0.90431 0.90831 0.90047 0.92740 0.93235 0.92668 0.91108 0.91973 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 14.32 67.77 0.97 -2.87 16 2 C -0.19 -4.85 9.74 25.64 0.25 -4.60 16 3 C 0.13 4.01 5.65 85.64 0.48 4.50 16 4 N -0.60 -26.05 2.44 -830.53 -2.03 -28.07 16 5 C 0.27 14.77 5.16 85.63 0.44 15.22 16 6 C -0.54 -32.17 9.39 25.60 0.24 -31.93 16 7 H 0.05 3.15 7.81 -2.91 -0.02 3.12 16 8 C 0.01 0.43 5.46 84.65 0.46 0.89 16 9 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 10 Si 0.97 45.73 29.54 68.60 2.03 47.75 16 11 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 14 C 0.49 22.10 7.75 87.65 0.68 22.78 16 15 O -0.59 -33.63 16.08 16.00 0.26 -33.37 16 16 C 0.06 1.85 4.78 71.23 0.34 2.20 16 17 O -0.39 -13.32 9.52 -129.94 -1.24 -14.56 16 18 C 0.08 1.90 2.61 30.59 0.08 1.98 16 19 H 0.08 1.48 7.79 -2.39 -0.02 1.46 16 20 C -0.14 -2.93 5.54 30.60 0.17 -2.76 16 21 C -0.11 -1.55 5.92 30.60 0.18 -1.37 16 22 C -0.12 -1.57 5.20 30.59 0.16 -1.41 16 23 C -0.08 -1.21 2.72 -10.79 -0.03 -1.24 16 24 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 25 C -0.15 -1.95 9.19 71.98 0.66 -1.29 16 26 C -0.11 -2.40 4.85 30.59 0.15 -2.25 16 27 H 0.10 2.29 7.84 -2.91 -0.02 2.27 16 28 H 0.12 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.12 2.73 7.83 -2.91 -0.02 2.71 16 30 H 0.08 2.63 7.72 -2.39 -0.02 2.61 16 31 H 0.11 2.51 6.44 -2.39 -0.02 2.50 16 32 H 0.03 1.43 8.07 -2.39 -0.02 1.41 16 33 H -0.01 -0.43 7.42 -2.39 -0.02 -0.44 16 34 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.10 2.47 7.13 -2.39 -0.02 2.45 16 36 H 0.11 2.48 7.72 -2.39 -0.02 2.46 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.30 7.87 -2.39 -0.02 1.28 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -78.81 380.04 5.44 -73.36 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.90 Total: 13.99 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 5.24 Total: -2.17 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.74 Total: -85.01 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -0.98 Total: -47.93 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -78.81 5.44 -73.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574346599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.138 kcal (2) G-P(sol) polarization free energy of solvation -78.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds