Wall clock time and date at job start Tue Mar 31 2020 07:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 119.99979 * 2 1 4 4 N 1.46497 * 109.47073 * 124.99234 * 3 2 1 5 5 C 1.46506 * 119.99524 * 90.00325 * 4 3 2 6 6 C 1.50698 * 109.47006 * 269.99278 * 5 4 3 7 7 H 1.08005 * 119.99819 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00046 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00192 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 180.02562 * 10 8 6 12 12 H 1.48503 * 109.47261 * 60.00310 * 10 8 6 13 13 H 1.48500 * 109.47454 * 300.00304 * 10 8 6 14 14 C 1.34774 * 120.00119 * 269.99540 * 4 3 2 15 15 O 1.21285 * 119.99988 * 180.02562 * 14 4 3 16 16 C 1.50696 * 120.00181 * 0.02562 * 14 4 3 17 17 O 1.42898 * 109.47123 * 179.97438 * 16 14 4 18 18 C 1.42904 * 113.99975 * 179.97438 * 17 16 14 19 19 H 1.09003 * 109.46758 * 30.00496 * 18 17 16 20 20 C 1.53000 * 109.47156 * 269.99968 * 18 17 16 21 21 C 1.53004 * 109.46508 * 179.97438 * 20 18 17 22 22 C 1.52995 * 109.47353 * 60.00368 * 21 20 18 23 23 C 1.52998 * 109.47129 * 299.99866 * 22 21 20 24 24 H 1.09003 * 109.47216 * 299.99864 * 23 22 21 25 25 C 1.53004 * 109.47342 * 180.02562 * 23 22 21 26 26 C 1.52994 * 109.47408 * 59.99668 * 23 22 21 27 27 H 1.08005 * 120.00457 * 0.02562 * 1 2 3 28 28 H 1.08006 * 119.99951 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00115 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46690 * 4.99491 * 3 2 1 31 31 H 1.08995 * 109.46764 * 244.99924 * 3 2 1 32 32 H 1.09001 * 109.47068 * 149.99942 * 5 4 3 33 33 H 1.08993 * 109.47068 * 29.99396 * 5 4 3 34 34 H 0.97001 * 119.99934 * 359.97438 * 9 8 6 35 35 H 1.09001 * 109.46907 * 299.99471 * 16 14 4 36 36 H 1.08997 * 109.47634 * 59.99268 * 16 14 4 37 37 H 1.08994 * 109.47166 * 299.99848 * 20 18 17 38 38 H 1.09000 * 109.47197 * 60.00367 * 20 18 17 39 39 H 1.09003 * 109.46558 * 179.97438 * 21 20 18 40 40 H 1.08994 * 109.47380 * 299.99836 * 21 20 18 41 41 H 1.09007 * 109.47199 * 59.99172 * 22 21 20 42 42 H 1.09001 * 109.47549 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.46735 * 59.99864 * 25 23 22 44 44 H 1.09003 * 109.47114 * 179.97438 * 25 23 22 45 45 H 1.08994 * 109.47195 * 299.99618 * 25 23 22 46 46 H 1.09006 * 109.47568 * 180.02562 * 26 23 22 47 47 H 1.09007 * 109.47236 * 60.00501 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9936 1.3320 1.1315 5 6 4.3588 0.8258 0.9696 6 6 4.3924 -0.6437 1.3021 7 1 3.4873 -1.1499 1.6036 8 6 5.5784 -1.3420 1.2206 9 7 6.6805 -0.7257 0.8531 10 14 5.6199 -3.1636 1.6322 11 1 7.0038 -3.6768 1.4682 12 1 4.7077 -3.8983 0.7193 13 1 5.1815 -3.3639 3.0368 14 6 2.5934 1.8225 2.3213 15 8 3.3636 1.8452 3.2580 16 6 1.1890 2.3429 2.4880 17 8 1.0079 2.8044 3.8282 18 6 -0.2976 3.3217 4.0934 19 1 -1.0252 2.8132 3.4608 20 6 -0.3220 4.8221 3.7946 21 6 -1.7200 5.3756 4.0780 22 6 -2.0724 5.1427 5.5485 23 6 -2.0478 3.6424 5.8473 24 1 -2.7751 3.1339 5.2145 25 6 -2.4008 3.4094 7.3177 26 6 -0.6500 3.0887 5.5639 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6212 1.4026 -0.9313 32 1 5.0282 1.3653 1.6396 33 1 4.6808 0.9724 -0.0614 34 1 6.6589 0.2202 0.6390 35 1 1.0220 3.1667 1.7940 36 1 0.4781 1.5432 2.2803 37 1 0.4056 5.3304 4.4271 38 1 -0.0715 4.9880 2.7468 39 1 -1.7373 6.4446 3.8655 40 1 -2.4473 4.8672 3.4451 41 1 -1.3449 5.6511 6.1814 42 1 -3.0681 5.5375 5.7505 43 1 -3.3968 3.8037 7.5191 44 1 -2.3837 2.3404 7.5305 45 1 -1.6738 3.9178 7.9509 46 1 -0.6325 2.0197 5.7764 47 1 0.0775 3.5971 6.1969 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574346601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:43 Heat of formation + Delta-G solvation = -87.997338 kcal Electronic energy + Delta-G solvation = -24510.574517 eV Core-core repulsion = 21078.979749 eV Total energy + Delta-G solvation = -3431.594769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.70709 -38.90461 -36.65009 -35.66254 -33.43789 -32.51818 -32.11971 -30.39591 -28.27208 -26.64142 -26.50993 -25.13299 -22.75706 -22.55474 -21.38575 -20.11002 -19.86742 -18.70563 -17.08379 -16.90162 -16.28428 -15.75034 -15.50109 -15.00081 -14.80822 -14.63685 -14.33348 -13.85295 -13.70240 -13.38447 -13.27590 -13.07023 -12.87431 -12.61062 -12.36905 -12.27903 -12.01796 -11.72393 -11.61904 -11.34574 -11.20859 -11.11500 -11.05687 -10.78063 -10.71721 -10.59120 -10.52500 -10.46600 -10.09516 -9.45961 -9.27730 -9.11519 -8.89872 -8.37594 -7.69957 -6.37202 -4.09098 2.43291 3.26144 3.34422 3.42960 3.48395 3.65080 4.16460 4.44578 4.51997 4.54719 4.72754 4.88431 4.90801 5.01359 5.10360 5.12607 5.21425 5.22992 5.28038 5.31459 5.36582 5.38645 5.42991 5.46661 5.50309 5.61471 5.61860 5.73944 5.80523 5.83206 5.86459 5.94258 6.02638 6.05140 6.16440 6.18778 6.25558 6.72979 6.87488 6.94048 7.09855 7.23099 7.40032 8.04123 8.22860 8.43642 8.78539 8.99215 9.60166 11.00039 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.003406 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.304897 B = 8219.938950 C = 8545.037117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C 0.137 3.863 4 N -0.592 5.592 5 C 0.237 3.763 6 C -0.604 4.604 7 H 0.053 0.947 8 C 0.020 3.980 9 N -0.910 5.910 10 Si 1.070 2.930 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.287 1.287 14 C 0.509 3.491 15 O -0.517 6.517 16 C 0.046 3.954 17 O -0.355 6.355 18 C 0.088 3.912 19 H 0.058 0.942 20 C -0.143 4.143 21 C -0.116 4.116 22 C -0.117 4.117 23 C -0.089 4.089 24 H 0.070 0.930 25 C -0.147 4.147 26 C -0.111 4.111 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.034 0.966 33 H 0.023 0.977 34 H 0.267 0.733 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.881 10.313 3.152 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.165 4.165 3 C 0.014 3.986 4 N -0.325 5.325 5 C 0.118 3.882 6 C -0.643 4.643 7 H 0.071 0.929 8 C -0.185 4.185 9 N -0.546 5.546 10 Si 0.898 3.102 11 H -0.207 1.207 12 H -0.215 1.215 13 H -0.214 1.214 14 C 0.294 3.706 15 O -0.392 6.392 16 C -0.034 4.034 17 O -0.273 6.273 18 C 0.030 3.970 19 H 0.076 0.924 20 C -0.181 4.181 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.107 4.107 24 H 0.088 0.912 25 C -0.204 4.204 26 C -0.149 4.149 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.142 0.858 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.267 9.018 3.909 21.629 hybrid contribution -1.333 1.219 -0.478 1.869 sum -20.600 10.237 3.431 23.258 Atomic orbital electron populations 1.23729 0.95726 1.01312 1.03984 1.23652 0.95860 1.00452 0.96575 1.20613 0.92294 0.94578 0.91159 1.47995 1.14596 1.60853 1.09052 1.19380 0.77104 0.95312 0.96425 1.22248 0.97559 0.94064 1.50388 0.92895 1.25787 0.91869 1.06490 0.94309 1.70802 1.28820 1.12478 1.42474 0.83531 0.76009 0.74238 0.76447 1.20665 1.21479 1.21394 1.19955 0.88341 0.79053 0.83219 1.90698 1.54797 1.55101 1.38640 1.22389 0.96704 0.98789 0.85498 1.88070 1.30999 1.80950 1.27254 1.22129 0.84782 0.93154 0.96913 0.92372 1.22063 0.97635 0.96401 1.01956 1.21486 0.96456 1.00792 0.96632 1.21640 1.01449 0.95854 0.96459 1.21095 0.96577 0.95980 0.97084 0.91191 1.21812 1.01191 1.01821 0.95569 1.21638 0.96373 1.01972 0.94902 0.89188 0.88605 0.85835 0.91402 0.89530 0.94758 0.95913 0.92232 0.91394 0.90765 0.90905 0.91921 0.91721 0.92004 0.91717 0.91959 0.92695 0.92504 0.92523 0.91122 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.65 13.86 29.02 0.40 -2.25 16 2 C -0.15 -2.31 9.74 -36.02 -0.35 -2.66 16 3 C 0.14 2.21 5.69 -5.19 -0.03 2.18 16 4 N -0.59 -12.68 2.44 -176.43 -0.43 -13.11 16 5 C 0.24 6.17 4.52 -5.19 -0.02 6.15 16 6 C -0.60 -17.22 9.28 -34.44 -0.32 -17.53 16 7 H 0.05 1.52 7.45 -52.48 -0.39 1.13 16 8 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 9 N -0.91 -27.84 13.65 55.43 0.76 -27.08 16 10 Si 1.07 25.76 29.90 -169.99 -5.08 20.68 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.51 11.23 7.75 -10.99 -0.09 11.15 16 15 O -0.52 -14.09 16.08 -14.36 -0.23 -14.32 16 16 C 0.05 0.76 4.78 36.00 0.17 0.93 16 17 O -0.35 -6.11 9.52 -55.14 -0.53 -6.63 16 18 C 0.09 1.09 2.61 -26.73 -0.07 1.02 16 19 H 0.06 0.64 7.79 -51.93 -0.40 0.24 16 20 C -0.14 -1.51 5.54 -26.73 -0.15 -1.66 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 22 C -0.12 -0.91 5.20 -26.73 -0.14 -1.05 16 23 C -0.09 -0.76 2.72 -90.62 -0.25 -1.01 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 C -0.15 -1.12 9.20 37.16 0.34 -0.78 16 26 C -0.11 -1.25 4.86 -26.73 -0.13 -1.38 16 27 H 0.09 0.94 7.84 -52.48 -0.41 0.53 16 28 H 0.10 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.12 2.29 7.58 -52.49 -0.40 1.89 16 30 H 0.07 0.86 6.09 -51.93 -0.32 0.55 16 31 H 0.09 1.33 7.89 -51.93 -0.41 0.92 16 32 H 0.03 1.00 7.29 -51.93 -0.38 0.63 16 33 H 0.02 0.59 7.76 -51.93 -0.40 0.18 16 34 H 0.27 8.12 7.22 -40.82 -0.29 7.82 16 35 H 0.07 0.91 7.13 -51.93 -0.37 0.54 16 36 H 0.07 1.10 7.48 -51.93 -0.39 0.71 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -34.32 377.05 -9.16 -43.48 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -8.44 Total: -1.18 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -0.88 Total: -7.52 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.33 Total: -40.20 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.76 Total: -20.95 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.32 -9.16 -43.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574346601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.518 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds