Wall clock time and date at job start Tue Mar 31 2020 07:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 119.99979 * 2 1 4 4 N 1.46497 * 109.47073 * 124.99234 * 3 2 1 5 5 C 1.46506 * 119.99524 * 90.00325 * 4 3 2 6 6 C 1.50698 * 109.47006 * 269.99278 * 5 4 3 7 7 H 1.08005 * 119.99819 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00046 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00192 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 180.02562 * 10 8 6 12 12 H 1.48503 * 109.47261 * 60.00310 * 10 8 6 13 13 H 1.48500 * 109.47454 * 300.00304 * 10 8 6 14 14 C 1.34774 * 120.00119 * 269.99540 * 4 3 2 15 15 O 1.21285 * 119.99988 * 180.02562 * 14 4 3 16 16 C 1.50696 * 120.00181 * 0.02562 * 14 4 3 17 17 O 1.42898 * 109.47123 * 179.97438 * 16 14 4 18 18 C 1.42904 * 113.99975 * 179.97438 * 17 16 14 19 19 H 1.09003 * 109.46758 * 30.00496 * 18 17 16 20 20 C 1.53000 * 109.47156 * 269.99968 * 18 17 16 21 21 C 1.53004 * 109.46508 * 179.97438 * 20 18 17 22 22 C 1.52995 * 109.47353 * 60.00368 * 21 20 18 23 23 C 1.52998 * 109.47129 * 299.99866 * 22 21 20 24 24 H 1.09003 * 109.47216 * 299.99864 * 23 22 21 25 25 C 1.53004 * 109.47342 * 180.02562 * 23 22 21 26 26 C 1.52994 * 109.47408 * 59.99668 * 23 22 21 27 27 H 1.08005 * 120.00457 * 0.02562 * 1 2 3 28 28 H 1.08006 * 119.99951 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00115 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46690 * 4.99491 * 3 2 1 31 31 H 1.08995 * 109.46764 * 244.99924 * 3 2 1 32 32 H 1.09001 * 109.47068 * 149.99942 * 5 4 3 33 33 H 1.08993 * 109.47068 * 29.99396 * 5 4 3 34 34 H 0.97001 * 119.99934 * 359.97438 * 9 8 6 35 35 H 1.09001 * 109.46907 * 299.99471 * 16 14 4 36 36 H 1.08997 * 109.47634 * 59.99268 * 16 14 4 37 37 H 1.08994 * 109.47166 * 299.99848 * 20 18 17 38 38 H 1.09000 * 109.47197 * 60.00367 * 20 18 17 39 39 H 1.09003 * 109.46558 * 179.97438 * 21 20 18 40 40 H 1.08994 * 109.47380 * 299.99836 * 21 20 18 41 41 H 1.09007 * 109.47199 * 59.99172 * 22 21 20 42 42 H 1.09001 * 109.47549 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.46735 * 59.99864 * 25 23 22 44 44 H 1.09003 * 109.47114 * 179.97438 * 25 23 22 45 45 H 1.08994 * 109.47195 * 299.99618 * 25 23 22 46 46 H 1.09006 * 109.47568 * 180.02562 * 26 23 22 47 47 H 1.09007 * 109.47236 * 60.00501 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9936 1.3320 1.1315 5 6 4.3588 0.8258 0.9696 6 6 4.3924 -0.6437 1.3021 7 1 3.4873 -1.1499 1.6036 8 6 5.5784 -1.3420 1.2206 9 7 6.6805 -0.7257 0.8531 10 14 5.6199 -3.1636 1.6322 11 1 7.0038 -3.6768 1.4682 12 1 4.7077 -3.8983 0.7193 13 1 5.1815 -3.3639 3.0368 14 6 2.5934 1.8225 2.3213 15 8 3.3636 1.8452 3.2580 16 6 1.1890 2.3429 2.4880 17 8 1.0079 2.8044 3.8282 18 6 -0.2976 3.3217 4.0934 19 1 -1.0252 2.8132 3.4608 20 6 -0.3220 4.8221 3.7946 21 6 -1.7200 5.3756 4.0780 22 6 -2.0724 5.1427 5.5485 23 6 -2.0478 3.6424 5.8473 24 1 -2.7751 3.1339 5.2145 25 6 -2.4008 3.4094 7.3177 26 6 -0.6500 3.0887 5.5639 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6212 1.4026 -0.9313 32 1 5.0282 1.3653 1.6396 33 1 4.6808 0.9724 -0.0614 34 1 6.6589 0.2202 0.6390 35 1 1.0220 3.1667 1.7940 36 1 0.4781 1.5432 2.2803 37 1 0.4056 5.3304 4.4271 38 1 -0.0715 4.9880 2.7468 39 1 -1.7373 6.4446 3.8655 40 1 -2.4473 4.8672 3.4451 41 1 -1.3449 5.6511 6.1814 42 1 -3.0681 5.5375 5.7505 43 1 -3.3968 3.8037 7.5191 44 1 -2.3837 2.3404 7.5305 45 1 -1.6738 3.9178 7.9509 46 1 -0.6325 2.0197 5.7764 47 1 0.0775 3.5971 6.1969 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574346601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:42 Heat of formation + Delta-G solvation = -108.029130 kcal Electronic energy + Delta-G solvation = -24511.443161 eV Core-core repulsion = 21078.979749 eV Total energy + Delta-G solvation = -3432.463412 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08017 -40.09114 -37.77407 -37.25114 -35.41283 -33.72246 -33.23203 -31.39291 -29.88266 -28.06570 -27.30465 -26.73386 -24.78289 -23.35281 -22.18274 -21.27573 -20.80773 -20.17373 -19.11752 -18.37013 -17.63664 -17.07663 -16.78153 -16.25084 -15.80682 -15.74012 -15.56357 -15.26003 -15.07339 -14.89382 -14.37600 -14.28137 -14.04405 -13.81203 -13.67034 -13.41235 -13.30845 -13.27795 -12.76324 -12.69216 -12.45945 -12.40116 -12.22045 -11.97816 -11.97383 -11.84532 -11.42923 -11.32794 -11.29344 -11.16534 -10.75702 -10.62363 -10.48275 -10.28761 -9.57701 -8.69619 -6.44302 1.26761 1.46626 1.56114 1.65301 1.75296 1.95851 2.51657 2.89431 3.09536 3.57582 3.73451 3.79231 3.89139 4.01286 4.05540 4.12594 4.14365 4.20691 4.23040 4.28172 4.47318 4.51277 4.52215 4.63583 4.66987 4.70958 4.76524 4.84025 4.89292 4.98534 5.05475 5.08624 5.11155 5.13427 5.28868 5.29462 5.38652 5.40116 5.48119 5.56745 5.72720 5.80581 5.83057 6.10212 6.20353 6.44955 6.59915 7.24132 7.37174 8.65661 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.003406 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.304897 B = 8219.938950 C = 8545.037117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.188 4.188 3 C 0.134 3.866 4 N -0.593 5.593 5 C 0.247 3.753 6 C -0.610 4.610 7 H 0.047 0.953 8 C -0.033 4.033 9 N -0.933 5.933 10 Si 1.116 2.884 11 H -0.279 1.279 12 H -0.260 1.260 13 H -0.282 1.282 14 C 0.495 3.505 15 O -0.587 6.587 16 C 0.062 3.938 17 O -0.394 6.394 18 C 0.082 3.918 19 H 0.081 0.919 20 C -0.141 4.141 21 C -0.110 4.110 22 C -0.116 4.116 23 C -0.082 4.082 24 H 0.083 0.917 25 C -0.147 4.147 26 C -0.112 4.112 27 H 0.126 0.874 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.087 0.913 32 H -0.010 1.010 33 H 0.023 0.977 34 H 0.255 0.745 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.049 0.951 46 H 0.057 0.943 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.109 10.574 2.269 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.013 3.987 4 N -0.325 5.325 5 C 0.126 3.874 6 C -0.648 4.648 7 H 0.065 0.935 8 C -0.231 4.231 9 N -0.570 5.570 10 Si 0.937 3.063 11 H -0.204 1.204 12 H -0.185 1.185 13 H -0.208 1.208 14 C 0.284 3.716 15 O -0.467 6.467 16 C -0.017 4.017 17 O -0.313 6.313 18 C 0.025 3.975 19 H 0.099 0.901 20 C -0.179 4.179 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.101 4.101 24 H 0.101 0.899 25 C -0.204 4.204 26 C -0.150 4.150 27 H 0.144 0.856 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.132 0.868 31 H 0.105 0.895 32 H 0.008 0.992 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.559 9.300 2.976 25.503 hybrid contribution -0.100 1.183 -0.200 1.204 sum -23.659 10.483 2.776 26.026 Atomic orbital electron populations 1.24060 0.94264 1.03607 0.98286 1.23307 0.97032 0.98585 1.01849 1.20947 0.92092 0.96645 0.89047 1.48033 1.13680 1.59868 1.10905 1.18914 0.79683 0.93870 0.94980 1.22513 0.97330 0.95258 1.49700 0.93488 1.27315 0.91549 1.10642 0.93572 1.70921 1.29686 1.11964 1.44431 0.82956 0.76725 0.69632 0.76982 1.20390 1.18480 1.20847 1.21136 0.90388 0.77946 0.82165 1.90655 1.57204 1.57916 1.40910 1.22292 0.92388 1.00605 0.86397 1.88050 1.34003 1.81557 1.27704 1.22433 0.83127 0.94307 0.97614 0.90065 1.22051 0.98958 0.95010 1.01865 1.21479 0.94907 1.01520 0.96883 1.21651 1.02274 0.95106 0.96314 1.21078 0.94699 0.96541 0.97768 0.89912 1.21817 1.01926 1.01659 0.95000 1.21680 0.97864 1.01126 0.94358 0.85567 0.87389 0.89707 0.86799 0.89515 0.99164 0.95885 0.93561 0.87462 0.88340 0.92899 0.91313 0.90605 0.90435 0.92666 0.90029 0.91031 0.92860 0.93177 0.92398 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 13.86 67.78 0.94 -2.47 16 2 C -0.19 -5.61 9.74 25.65 0.25 -5.36 16 3 C 0.13 4.09 5.69 85.64 0.49 4.58 16 4 N -0.59 -25.81 2.44 -830.50 -2.03 -27.84 16 5 C 0.25 13.55 4.52 85.63 0.39 13.94 16 6 C -0.61 -36.07 9.28 25.60 0.24 -35.84 16 7 H 0.05 2.78 7.45 -2.91 -0.02 2.76 16 8 C -0.03 -1.96 5.46 84.65 0.46 -1.50 16 9 N -0.93 -59.18 13.65 21.45 0.29 -58.89 16 10 Si 1.12 52.46 29.90 68.60 2.05 54.51 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 C 0.50 22.17 7.75 87.66 0.68 22.85 16 15 O -0.59 -33.70 16.08 15.99 0.26 -33.44 16 16 C 0.06 1.90 4.78 71.23 0.34 2.24 16 17 O -0.39 -13.28 9.52 -129.94 -1.24 -14.52 16 18 C 0.08 1.86 2.61 30.60 0.08 1.94 16 19 H 0.08 1.45 7.79 -2.39 -0.02 1.44 16 20 C -0.14 -2.67 5.54 30.60 0.17 -2.50 16 21 C -0.11 -1.41 5.92 30.59 0.18 -1.23 16 22 C -0.12 -1.49 5.20 30.59 0.16 -1.33 16 23 C -0.08 -1.22 2.72 -10.79 -0.03 -1.25 16 24 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 25 C -0.15 -1.99 9.20 71.98 0.66 -1.33 16 26 C -0.11 -2.46 4.86 30.59 0.15 -2.31 16 27 H 0.13 1.76 7.84 -2.91 -0.02 1.73 16 28 H 0.11 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.08 3.18 7.58 -2.91 -0.02 3.16 16 30 H 0.11 2.39 6.09 -2.39 -0.01 2.37 16 31 H 0.09 2.59 7.89 -2.39 -0.02 2.57 16 32 H -0.01 -0.61 7.29 -2.39 -0.02 -0.63 16 33 H 0.02 1.25 7.76 -2.39 -0.02 1.23 16 34 H 0.26 16.34 7.22 -92.71 -0.67 15.67 16 35 H 0.11 2.41 7.13 -2.39 -0.02 2.39 16 36 H 0.10 2.52 7.48 -2.39 -0.02 2.50 16 37 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.20 7.87 -2.39 -0.02 1.18 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 47 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -81.38 377.05 5.50 -75.88 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 1.01 Total: 13.84 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 5.15 Total: -9.56 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -1.73 Total: -86.72 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -0.98 Total: -47.96 kcal Atomic # 14 Polarization: 52.46 SS G_CDS: 2.05 Total: 54.51 kcal Total: -81.38 5.50 -75.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574346601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.147 kcal (2) G-P(sol) polarization free energy of solvation -81.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds