Wall clock time and date at job start Tue Mar 31 2020 06:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47382 * 2 1 4 4 N 1.46503 * 109.46657 * 119.99393 * 2 1 3 5 5 C 1.46500 * 119.99767 * 118.79875 * 4 2 1 6 6 C 1.50705 * 109.46953 * 264.55211 * 5 4 2 7 7 H 1.08000 * 120.00111 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00139 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99834 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00080 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46756 * 90.00461 * 10 8 6 12 12 H 1.48496 * 109.47108 * 210.00268 * 10 8 6 13 13 H 1.48495 * 109.47144 * 330.00583 * 10 8 6 14 14 C 1.34778 * 120.00384 * 298.79534 * 4 2 1 15 15 O 1.21283 * 119.99896 * 4.10775 * 14 4 2 16 16 C 1.50695 * 120.00129 * 184.11033 * 14 4 2 17 17 H 1.09002 * 109.77499 * 305.83497 * 16 14 4 18 18 C 1.53573 * 109.74114 * 185.15152 * 16 14 4 19 19 C 1.52954 * 109.43783 * 168.23291 * 18 16 14 20 20 C 1.52343 * 110.20580 * 78.32832 * 19 18 16 21 21 C 1.53452 * 109.57371 * 44.40036 * 20 19 18 22 22 C 1.53903 * 108.28954 * 245.81169 * 21 20 19 23 23 C 1.51201 * 107.17965 * 69.33220 * 22 21 20 24 24 O 1.20759 * 120.13639 * 108.35192 * 23 22 21 25 25 C 1.50245 * 119.73394 * 288.37367 * 23 22 21 26 26 H 1.09002 * 109.47525 * 305.61366 * 1 2 3 27 27 H 1.09007 * 109.46729 * 65.60661 * 1 2 3 28 28 H 1.08996 * 109.47331 * 185.60657 * 1 2 3 29 29 H 1.08997 * 109.47425 * 239.99121 * 2 1 3 30 30 H 1.09002 * 109.47326 * 183.70083 * 3 2 1 31 31 H 1.09004 * 109.46946 * 303.69307 * 3 2 1 32 32 H 1.09004 * 109.47545 * 63.69451 * 3 2 1 33 33 H 1.08996 * 109.47568 * 24.55135 * 5 4 2 34 34 H 1.08994 * 109.47419 * 144.55801 * 5 4 2 35 35 H 0.96993 * 119.99824 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.47790 * 48.24460 * 18 16 14 37 37 H 1.09004 * 109.47499 * 288.22517 * 18 16 14 38 38 H 1.08995 * 109.34933 * 198.55549 * 19 18 16 39 39 H 1.08998 * 109.34667 * 318.25915 * 19 18 16 40 40 H 1.09002 * 109.45200 * 164.43136 * 20 19 18 41 41 H 1.08996 * 109.45876 * 284.36704 * 20 19 18 42 42 H 1.09000 * 109.69486 * 5.50753 * 21 20 19 43 43 H 1.08996 * 109.70050 * 126.10597 * 21 20 19 44 44 H 1.09003 * 109.91147 * 188.74288 * 22 21 20 45 45 H 1.08995 * 109.91821 * 309.90391 * 22 21 20 46 46 H 1.09007 * 109.39442 * 232.73192 * 25 23 22 47 47 H 1.08998 * 109.40089 * 352.55204 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.8386 -1.8969 1.0622 6 6 1.9595 -3.1164 1.1676 7 1 0.8961 -3.0041 1.3190 8 6 2.5127 -4.3755 1.0698 9 7 3.8076 -4.5123 0.8851 10 14 1.4229 -5.8872 1.1998 11 1 0.9388 -6.2660 -0.1519 12 1 2.2020 -7.0107 1.7794 13 1 0.2617 -5.5865 2.0752 14 6 1.7127 -0.2160 2.4202 15 8 0.9729 0.7384 2.5333 16 6 2.2905 -0.8711 3.6482 17 1 2.0674 -1.9380 3.6365 18 6 1.6918 -0.2298 4.9086 19 6 2.0483 -1.0787 6.1300 20 6 3.4857 -0.8092 6.5568 21 6 3.7531 0.7017 6.5372 22 6 4.7931 0.9940 5.4410 23 6 4.1204 0.7464 4.1097 24 8 3.8340 1.6753 3.3931 25 6 3.8092 -0.6598 3.6821 26 1 -0.3634 0.5984 0.8354 27 1 -0.3633 0.4245 -0.9360 28 1 -0.3634 -1.0227 0.1004 29 1 1.8934 -0.5139 -0.8899 30 1 3.1280 1.4431 -0.0663 31 1 1.6237 1.9750 -0.8551 32 1 1.7318 1.9369 0.9212 33 1 3.3373 -1.8912 0.0930 34 1 3.5859 -1.9181 1.8553 35 1 4.1968 -5.3981 0.8166 36 1 0.6079 -0.1745 4.8084 37 1 2.0971 0.7744 5.0330 38 1 1.3754 -0.8309 6.9509 39 1 1.9400 -2.1341 5.8803 40 1 3.6430 -1.1927 7.5649 41 1 4.1683 -1.3076 5.8685 42 1 2.8284 1.2356 6.3181 43 1 4.1405 1.0189 7.5053 44 1 5.1183 2.0324 5.5052 45 1 5.6488 0.3284 5.5541 46 1 4.2215 -0.8357 2.6885 47 1 4.2552 -1.3601 4.3883 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575234469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:53 Heat of formation + Delta-G solvation = -80.263478 kcal Electronic energy + Delta-G solvation = -26512.167673 eV Core-core repulsion = 23080.908270 eV Total energy + Delta-G solvation = -3431.259403 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57805 -38.78949 -36.74660 -35.23391 -33.69273 -32.67456 -31.50724 -30.53917 -27.01569 -26.84664 -26.47881 -25.34601 -23.16164 -22.35083 -21.07493 -20.15219 -19.02582 -17.63513 -16.74601 -16.18378 -15.77904 -15.54514 -15.28300 -14.92433 -14.52749 -14.22001 -13.84682 -13.77883 -13.52543 -13.33381 -12.93421 -12.61643 -12.36673 -12.08943 -11.99264 -11.82123 -11.71533 -11.61657 -11.29540 -11.25195 -11.06724 -10.95694 -10.85354 -10.81077 -10.54539 -10.42966 -10.34920 -10.20927 -10.13234 -9.89127 -9.63959 -9.10796 -8.63937 -8.45101 -7.57363 -6.19367 -4.26209 2.27635 3.20743 3.28343 3.31447 3.60032 3.99682 4.28891 4.33653 4.77710 4.86694 4.96702 5.11069 5.18661 5.20032 5.26829 5.33120 5.45888 5.58675 5.61690 5.72539 5.83341 5.84158 5.90977 5.94387 5.99826 6.04513 6.11420 6.15360 6.19402 6.28270 6.30582 6.33074 6.46809 6.52277 6.54917 6.57444 6.68299 6.87954 6.92880 6.94653 7.21766 7.67125 7.79695 7.83962 8.07510 8.47614 8.82254 9.19439 9.42115 10.86671 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.006910 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.751040 B = 4051.197687 C = 5241.004168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 C -0.164 4.164 4 N -0.593 5.593 5 C 0.227 3.773 6 C -0.534 4.534 7 H 0.060 0.940 8 C 0.065 3.935 9 N -0.891 5.891 10 Si 0.893 3.107 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.530 3.470 15 O -0.563 6.563 16 C -0.091 4.091 17 H 0.119 0.881 18 C -0.115 4.115 19 C -0.121 4.121 20 C -0.136 4.136 21 C -0.120 4.120 22 C -0.170 4.170 23 C 0.359 3.641 24 O -0.448 6.448 25 C -0.175 4.175 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.047 0.953 35 H 0.265 0.735 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.111 0.889 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.647 6.194 8.757 10.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 C -0.222 4.222 4 N -0.324 5.324 5 C 0.107 3.893 6 C -0.573 4.573 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.530 5.530 10 Si 0.721 3.279 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.318 3.682 15 O -0.444 6.444 16 C -0.112 4.112 17 H 0.137 0.863 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.173 4.173 21 C -0.157 4.157 22 C -0.208 4.208 23 C 0.233 3.767 24 O -0.321 6.321 25 C -0.213 4.213 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.111 0.889 46 H 0.129 0.871 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.269 7.032 8.377 11.010 hybrid contribution -0.354 -1.299 -0.091 1.349 sum 0.916 5.734 8.286 10.118 Atomic orbital electron populations 1.22156 0.95876 1.02325 1.01671 1.20806 0.94094 0.92412 0.88175 1.22160 1.00413 0.96809 1.02801 1.48224 1.51822 1.28074 1.04233 1.19679 0.90550 0.80471 0.98583 1.21529 0.94702 0.90491 1.50565 0.92135 1.24926 0.95013 0.98962 0.94834 1.69915 1.10341 1.23692 1.49022 0.86561 0.80538 0.82319 0.78479 1.20571 1.21078 1.19775 1.20106 0.80508 0.82948 0.84594 1.90513 1.38091 1.28922 1.86828 1.21356 0.93113 1.03231 0.93473 0.86326 1.21867 1.01812 0.99000 0.92558 1.21519 0.96099 1.00770 0.97502 1.21967 0.97968 0.95569 1.01772 1.21949 0.98990 0.97323 0.97488 1.22600 0.99594 1.03626 0.94997 1.24639 0.74466 0.91011 0.86536 1.90435 1.41778 1.46291 1.53576 1.22588 0.97349 0.95863 1.05457 0.90918 0.93307 0.92571 0.90331 0.93371 0.93031 0.90416 0.94875 0.93529 0.92569 0.91014 0.90993 0.92101 0.91177 0.91908 0.90310 0.90347 0.91267 0.89895 0.88858 0.87143 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.04 37.16 0.34 -2.70 16 2 C 0.15 2.94 3.28 -67.93 -0.22 2.72 16 3 C -0.16 -3.02 9.16 37.16 0.34 -2.68 16 4 N -0.59 -12.73 2.41 -167.47 -0.40 -13.13 16 5 C 0.23 5.29 4.60 -5.19 -0.02 5.27 16 6 C -0.53 -13.55 8.76 -34.44 -0.30 -13.85 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -23.75 13.29 55.43 0.74 -23.01 16 10 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 C 0.53 11.20 5.55 -10.99 -0.06 11.13 16 15 O -0.56 -12.79 12.15 5.56 0.07 -12.72 16 16 C -0.09 -1.63 1.75 -91.29 -0.16 -1.79 16 17 H 0.12 2.28 7.10 -51.93 -0.37 1.91 16 18 C -0.11 -1.79 4.18 -26.46 -0.11 -1.90 16 19 C -0.12 -1.48 5.62 -27.09 -0.15 -1.63 16 20 C -0.14 -1.42 5.44 -26.83 -0.15 -1.57 16 21 C -0.12 -1.26 5.60 -26.03 -0.15 -1.40 16 22 C -0.17 -1.95 5.83 -27.17 -0.16 -2.11 16 23 C 0.36 5.64 4.29 -29.01 -0.12 5.51 16 24 O -0.45 -8.80 17.09 6.00 0.10 -8.70 16 25 C -0.18 -2.84 4.26 -27.92 -0.12 -2.96 16 26 H 0.07 1.46 6.30 -51.93 -0.33 1.14 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.52 7.72 -51.93 -0.40 1.12 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.62 6.13 -51.93 -0.32 1.30 16 33 H 0.03 0.83 7.80 -51.93 -0.40 0.42 16 34 H 0.05 1.08 4.31 -51.93 -0.22 0.86 16 35 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.07 1.21 7.81 -51.93 -0.41 0.80 16 37 H 0.07 1.16 3.82 -51.93 -0.20 0.96 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.88 7.83 -51.93 -0.41 0.47 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.85 4.49 -51.93 -0.23 0.61 16 42 H 0.08 0.94 5.56 -51.93 -0.29 0.65 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.09 0.87 7.97 -51.93 -0.41 0.46 16 46 H 0.11 2.03 5.39 -51.92 -0.28 1.75 16 47 H 0.10 1.34 5.20 -51.93 -0.27 1.07 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -29.31 347.29 -7.90 -37.20 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.47 Total: 6.38 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.15 Total: -6.39 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.33 Total: -36.15 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: 0.17 Total: -21.41 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.31 -7.90 -37.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575234469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.060 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds