Wall clock time and date at job start Tue Mar 31 2020 06:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47382 * 2 1 4 4 N 1.46503 * 109.46657 * 119.99393 * 2 1 3 5 5 C 1.46500 * 119.99767 * 118.79875 * 4 2 1 6 6 C 1.50705 * 109.46953 * 264.55211 * 5 4 2 7 7 H 1.08000 * 120.00111 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00139 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99834 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00080 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46756 * 90.00461 * 10 8 6 12 12 H 1.48496 * 109.47108 * 210.00268 * 10 8 6 13 13 H 1.48495 * 109.47144 * 330.00583 * 10 8 6 14 14 C 1.34778 * 120.00384 * 298.79534 * 4 2 1 15 15 O 1.21283 * 119.99896 * 4.10775 * 14 4 2 16 16 C 1.50695 * 120.00129 * 184.11033 * 14 4 2 17 17 H 1.09002 * 109.77499 * 305.83497 * 16 14 4 18 18 C 1.53573 * 109.74114 * 185.15152 * 16 14 4 19 19 C 1.52954 * 109.43783 * 168.23291 * 18 16 14 20 20 C 1.52343 * 110.20580 * 78.32832 * 19 18 16 21 21 C 1.53452 * 109.57371 * 44.40036 * 20 19 18 22 22 C 1.53903 * 108.28954 * 245.81169 * 21 20 19 23 23 C 1.51201 * 107.17965 * 69.33220 * 22 21 20 24 24 O 1.20759 * 120.13639 * 108.35192 * 23 22 21 25 25 C 1.50245 * 119.73394 * 288.37367 * 23 22 21 26 26 H 1.09002 * 109.47525 * 305.61366 * 1 2 3 27 27 H 1.09007 * 109.46729 * 65.60661 * 1 2 3 28 28 H 1.08996 * 109.47331 * 185.60657 * 1 2 3 29 29 H 1.08997 * 109.47425 * 239.99121 * 2 1 3 30 30 H 1.09002 * 109.47326 * 183.70083 * 3 2 1 31 31 H 1.09004 * 109.46946 * 303.69307 * 3 2 1 32 32 H 1.09004 * 109.47545 * 63.69451 * 3 2 1 33 33 H 1.08996 * 109.47568 * 24.55135 * 5 4 2 34 34 H 1.08994 * 109.47419 * 144.55801 * 5 4 2 35 35 H 0.96993 * 119.99824 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.47790 * 48.24460 * 18 16 14 37 37 H 1.09004 * 109.47499 * 288.22517 * 18 16 14 38 38 H 1.08995 * 109.34933 * 198.55549 * 19 18 16 39 39 H 1.08998 * 109.34667 * 318.25915 * 19 18 16 40 40 H 1.09002 * 109.45200 * 164.43136 * 20 19 18 41 41 H 1.08996 * 109.45876 * 284.36704 * 20 19 18 42 42 H 1.09000 * 109.69486 * 5.50753 * 21 20 19 43 43 H 1.08996 * 109.70050 * 126.10597 * 21 20 19 44 44 H 1.09003 * 109.91147 * 188.74288 * 22 21 20 45 45 H 1.08995 * 109.91821 * 309.90391 * 22 21 20 46 46 H 1.09007 * 109.39442 * 232.73192 * 25 23 22 47 47 H 1.08998 * 109.40089 * 352.55204 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.8386 -1.8969 1.0622 6 6 1.9595 -3.1164 1.1676 7 1 0.8961 -3.0041 1.3190 8 6 2.5127 -4.3755 1.0698 9 7 3.8076 -4.5123 0.8851 10 14 1.4229 -5.8872 1.1998 11 1 0.9388 -6.2660 -0.1519 12 1 2.2020 -7.0107 1.7794 13 1 0.2617 -5.5865 2.0752 14 6 1.7127 -0.2160 2.4202 15 8 0.9729 0.7384 2.5333 16 6 2.2905 -0.8711 3.6482 17 1 2.0674 -1.9380 3.6365 18 6 1.6918 -0.2298 4.9086 19 6 2.0483 -1.0787 6.1300 20 6 3.4857 -0.8092 6.5568 21 6 3.7531 0.7017 6.5372 22 6 4.7931 0.9940 5.4410 23 6 4.1204 0.7464 4.1097 24 8 3.8340 1.6753 3.3931 25 6 3.8092 -0.6598 3.6821 26 1 -0.3634 0.5984 0.8354 27 1 -0.3633 0.4245 -0.9360 28 1 -0.3634 -1.0227 0.1004 29 1 1.8934 -0.5139 -0.8899 30 1 3.1280 1.4431 -0.0663 31 1 1.6237 1.9750 -0.8551 32 1 1.7318 1.9369 0.9212 33 1 3.3373 -1.8912 0.0930 34 1 3.5859 -1.9181 1.8553 35 1 4.1968 -5.3981 0.8166 36 1 0.6079 -0.1745 4.8084 37 1 2.0971 0.7744 5.0330 38 1 1.3754 -0.8309 6.9509 39 1 1.9400 -2.1341 5.8803 40 1 3.6430 -1.1927 7.5649 41 1 4.1683 -1.3076 5.8685 42 1 2.8284 1.2356 6.3181 43 1 4.1405 1.0189 7.5053 44 1 5.1183 2.0324 5.5052 45 1 5.6488 0.3284 5.5541 46 1 4.2215 -0.8357 2.6885 47 1 4.2552 -1.3601 4.3883 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575234469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:52 Heat of formation + Delta-G solvation = -95.782402 kcal Electronic energy + Delta-G solvation = -26512.840624 eV Core-core repulsion = 23080.908270 eV Total energy + Delta-G solvation = -3431.932354 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.96247 -40.31986 -37.96485 -36.93824 -35.28184 -34.29620 -32.90891 -31.90712 -28.87877 -28.09724 -27.95477 -26.58195 -24.88729 -23.81139 -22.43307 -21.28702 -20.32768 -19.15683 -18.68291 -17.65766 -17.16081 -17.07290 -16.63147 -16.39158 -16.21124 -15.56873 -15.31569 -15.01429 -14.73084 -14.66049 -14.32866 -14.30542 -13.99917 -13.65768 -13.42345 -13.33308 -13.10424 -12.89277 -12.78105 -12.72800 -12.63400 -12.52380 -12.27160 -12.17841 -12.11440 -11.90557 -11.73382 -11.58523 -11.52891 -11.19598 -11.12350 -10.61583 -10.34404 -10.13085 -9.35345 -8.17582 -6.31451 1.01375 1.40981 1.44123 1.52769 1.93312 2.33562 2.47929 3.08672 3.15813 3.63061 3.76652 3.90334 3.95657 3.99784 4.17262 4.17629 4.24455 4.25820 4.35845 4.41269 4.52007 4.64373 4.68981 4.73120 4.73876 4.74698 4.89752 4.93640 4.96878 4.99807 5.06161 5.07704 5.10215 5.14898 5.26488 5.30352 5.33789 5.39487 5.42313 5.49028 5.61930 5.70526 5.99766 6.11410 6.60923 6.64113 6.89608 7.36587 7.53009 8.87257 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.006910 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.751040 B = 4051.197687 C = 5241.004168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.136 3.864 3 C -0.150 4.150 4 N -0.599 5.599 5 C 0.240 3.760 6 C -0.542 4.542 7 H 0.047 0.953 8 C 0.028 3.972 9 N -0.915 5.915 10 Si 0.951 3.049 11 H -0.280 1.280 12 H -0.277 1.277 13 H -0.272 1.272 14 C 0.521 3.479 15 O -0.583 6.583 16 C -0.090 4.090 17 H 0.104 0.896 18 C -0.108 4.108 19 C -0.117 4.117 20 C -0.133 4.133 21 C -0.116 4.116 22 C -0.161 4.161 23 C 0.361 3.639 24 O -0.495 6.495 25 C -0.174 4.174 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.012 0.988 34 H 0.050 0.950 35 H 0.268 0.732 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.123 0.877 46 H 0.085 0.915 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.197 5.674 10.501 12.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.033 3.967 3 C -0.208 4.208 4 N -0.329 5.329 5 C 0.119 3.881 6 C -0.581 4.581 7 H 0.065 0.935 8 C -0.173 4.173 9 N -0.554 5.554 10 Si 0.777 3.223 11 H -0.206 1.206 12 H -0.202 1.202 13 H -0.197 1.197 14 C 0.311 3.689 15 O -0.465 6.465 16 C -0.111 4.111 17 H 0.122 0.878 18 C -0.146 4.146 19 C -0.154 4.154 20 C -0.170 4.170 21 C -0.154 4.154 22 C -0.199 4.199 23 C 0.239 3.761 24 O -0.371 6.371 25 C -0.212 4.212 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.141 0.859 46 H 0.103 0.897 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.822 6.507 10.128 12.176 hybrid contribution -0.544 -1.105 -0.684 1.408 sum 1.278 5.403 9.445 10.956 Atomic orbital electron populations 1.22039 0.94998 1.01176 1.02659 1.21045 0.94870 0.93059 0.87739 1.22016 1.00088 0.95895 1.02768 1.48284 1.51738 1.27714 1.05187 1.19415 0.90485 0.80744 0.97429 1.21618 0.94187 0.91537 1.50724 0.93472 1.25549 0.96089 1.01252 0.94433 1.69992 1.11495 1.24440 1.49494 0.85662 0.79009 0.79367 0.78290 1.20559 1.20179 1.19698 1.20692 0.80144 0.82768 0.85300 1.90492 1.38949 1.29836 1.87177 1.21356 0.94551 1.02029 0.93154 0.87784 1.21836 1.00271 0.99392 0.93054 1.21504 0.98100 0.99679 0.96155 1.21971 0.96172 0.95634 1.03216 1.21953 0.97922 0.97103 0.98378 1.22631 1.00338 1.04893 0.92029 1.25179 0.73367 0.89829 0.87762 1.90426 1.43953 1.47319 1.55414 1.22616 0.95949 0.97635 1.04964 0.92567 0.90115 0.94146 0.90153 0.93890 0.89974 0.92929 0.96971 0.93232 0.92281 0.93047 0.91443 0.90389 0.91504 0.89150 0.90520 0.92138 0.88123 0.89252 0.85888 0.89740 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 9.04 71.98 0.65 -5.05 16 2 C 0.14 5.49 3.28 44.99 0.15 5.64 16 3 C -0.15 -5.59 9.16 71.98 0.66 -4.93 16 4 N -0.60 -26.69 2.41 -802.16 -1.93 -28.62 16 5 C 0.24 11.57 4.60 85.63 0.39 11.97 16 6 C -0.54 -28.04 8.76 25.60 0.22 -27.81 16 7 H 0.05 2.53 7.81 -2.91 -0.02 2.50 16 8 C 0.03 1.41 5.46 84.65 0.46 1.88 16 9 N -0.92 -48.82 13.29 21.45 0.28 -48.54 16 10 Si 0.95 41.12 29.54 68.60 2.03 43.15 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 13 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 14 C 0.52 22.89 5.55 87.66 0.49 23.37 16 15 O -0.58 -27.56 12.15 -3.04 -0.04 -27.60 16 16 C -0.09 -3.31 1.75 -11.23 -0.02 -3.33 16 17 H 0.10 4.11 7.10 -2.39 -0.02 4.10 16 18 C -0.11 -3.38 4.18 30.77 0.13 -3.25 16 19 C -0.12 -2.64 5.62 30.36 0.17 -2.47 16 20 C -0.13 -2.33 5.44 30.53 0.17 -2.16 16 21 C -0.12 -2.05 5.60 31.05 0.17 -1.88 16 22 C -0.16 -3.26 5.83 30.31 0.18 -3.09 16 23 C 0.36 11.19 4.29 29.12 0.12 11.31 16 24 O -0.50 -19.90 17.09 -1.45 -0.02 -19.93 16 25 C -0.17 -5.66 4.26 29.83 0.13 -5.53 16 26 H 0.06 2.31 6.30 -2.39 -0.02 2.29 16 27 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 3.17 7.72 -2.39 -0.02 3.16 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.05 2.24 6.13 -2.39 -0.01 2.23 16 33 H 0.01 0.63 7.80 -2.39 -0.02 0.61 16 34 H 0.05 2.37 4.31 -2.39 -0.01 2.36 16 35 H 0.27 13.55 8.31 -92.71 -0.77 12.77 16 36 H 0.05 1.78 7.81 -2.39 -0.02 1.76 16 37 H 0.07 2.19 3.82 -2.38 -0.01 2.18 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.57 7.83 -2.39 -0.02 1.55 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.38 4.49 -2.39 -0.01 1.37 16 42 H 0.06 1.32 5.56 -2.39 -0.01 1.31 16 43 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.12 1.81 7.97 -2.39 -0.02 1.79 16 46 H 0.08 3.20 5.39 -2.38 -0.01 3.19 16 47 H 0.13 3.32 5.20 -2.39 -0.01 3.31 16 Total: -1.00 -65.15 347.29 5.35 -59.79 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.96 Total: 27.07 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 4.07 Total: -5.33 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -1.65 Total: -77.16 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -0.06 Total: -47.53 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -65.15 5.35 -59.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575234469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.988 kcal (2) G-P(sol) polarization free energy of solvation -65.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds