Wall clock time and date at job start Tue Mar 31 2020 06:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47200 * 2 1 4 4 N 1.46499 * 109.47211 * 120.00268 * 2 1 3 5 5 C 1.46496 * 119.99938 * 305.15932 * 4 2 1 6 6 C 1.50701 * 109.47623 * 269.99995 * 5 4 2 7 7 H 1.07998 * 119.99478 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00225 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00141 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00009 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47334 * 89.99589 * 10 8 6 12 12 H 1.48497 * 109.47298 * 209.99757 * 10 8 6 13 13 H 1.48499 * 109.47133 * 329.99852 * 10 8 6 14 14 C 1.34779 * 120.00139 * 125.16596 * 4 2 1 15 15 O 1.21282 * 119.99889 * 185.52327 * 14 4 2 16 16 C 1.50702 * 119.99905 * 5.51512 * 14 4 2 17 17 H 1.08998 * 109.47785 * 25.40739 * 16 14 4 18 18 C 1.52658 * 109.48900 * 145.43383 * 16 14 4 19 19 C 1.54023 * 110.40692 * 193.53823 * 18 16 14 20 20 C 1.52460 * 111.04766 * 44.78569 * 19 18 16 21 21 C 1.54097 * 109.26865 * 245.78531 * 20 19 18 22 22 C 1.52047 * 109.16311 * 78.00322 * 21 20 19 23 23 C 1.51111 * 109.14475 * 287.37293 * 22 21 20 24 24 O 1.20759 * 120.43443 * 291.42593 * 23 22 21 25 25 C 1.49512 * 119.14054 * 111.14930 * 23 22 21 26 26 H 1.09002 * 109.47056 * 299.99510 * 1 2 3 27 27 H 1.08997 * 109.47108 * 59.99666 * 1 2 3 28 28 H 1.09004 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47481 * 240.00197 * 2 1 3 30 30 H 1.09002 * 109.47345 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47362 * 300.00178 * 3 2 1 32 32 H 1.09002 * 109.46716 * 60.00282 * 3 2 1 33 33 H 1.08998 * 109.47419 * 30.00451 * 5 4 2 34 34 H 1.09001 * 109.46912 * 150.00064 * 5 4 2 35 35 H 0.96996 * 120.00540 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.31281 * 313.82012 * 18 16 14 37 37 H 1.08995 * 109.31960 * 73.43705 * 18 16 14 38 38 H 1.08993 * 109.16576 * 165.19398 * 19 18 16 39 39 H 1.09006 * 109.16249 * 284.44056 * 19 18 16 40 40 H 1.08996 * 109.50489 * 5.72862 * 20 19 18 41 41 H 1.09002 * 109.50396 * 125.85051 * 20 19 18 42 42 H 1.08997 * 109.52078 * 197.90282 * 21 20 19 43 43 H 1.08995 * 109.52328 * 318.03438 * 21 20 19 44 44 H 1.08996 * 109.52444 * 167.47554 * 22 21 20 45 45 H 1.09003 * 109.52717 * 47.27750 * 22 21 20 46 46 H 1.08996 * 109.79803 * 76.56179 * 25 23 22 47 47 H 1.08999 * 109.79552 * 197.36510 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.5737 -0.2595 2.5237 6 6 2.5163 0.7905 3.0529 7 1 3.3618 1.1055 2.4593 8 6 2.2993 1.3490 4.2946 9 7 1.2695 0.9658 5.0171 10 14 3.4674 2.6511 4.9501 11 1 2.9919 3.9959 4.5369 12 1 3.5113 2.5755 6.4325 13 1 4.8275 2.4170 4.4020 14 6 2.8768 -1.7226 1.0752 15 8 3.2030 -2.3581 2.0553 16 6 3.4311 -2.0870 -0.2780 17 1 3.4181 -1.2095 -0.9244 18 6 4.8660 -2.5844 -0.1235 19 6 5.5652 -2.6416 -1.4947 20 6 5.2857 -1.3807 -2.3049 21 6 4.4501 -1.7487 -3.5462 22 6 3.0005 -1.9453 -3.1317 23 6 2.8756 -3.2417 -2.3654 24 8 3.0253 -4.3007 -2.9263 25 6 2.5704 -3.1963 -0.9025 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.5688 0.1568 2.4530 34 1 1.5659 -1.1146 3.1997 35 1 1.1166 1.3590 5.8906 36 1 5.4136 -1.9074 0.5324 37 1 4.8566 -3.5822 0.3152 38 1 6.6403 -2.7394 -1.3444 39 1 5.2009 -3.5084 -2.0462 40 1 4.7327 -0.6693 -1.6917 41 1 6.2287 -0.9343 -2.6203 42 1 4.5133 -0.9446 -4.2793 43 1 4.8332 -2.6709 -3.9829 44 1 2.3698 -1.9849 -4.0198 45 1 2.6871 -1.1158 -2.4978 46 1 1.5143 -2.9728 -0.7524 47 1 2.8135 -4.1552 -0.4447 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575234470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:56 Heat of formation + Delta-G solvation = -90.337235 kcal Electronic energy + Delta-G solvation = -26140.290584 eV Core-core repulsion = 22708.594350 eV Total energy + Delta-G solvation = -3431.696234 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77141 -39.05836 -36.75368 -36.01488 -33.47855 -32.76146 -31.66594 -30.85398 -27.76634 -26.86843 -26.58392 -25.64632 -23.21662 -22.05647 -21.42852 -20.29351 -19.17962 -18.02768 -17.30780 -16.47700 -15.94587 -15.76676 -15.18356 -14.98579 -14.52551 -14.42005 -14.18437 -13.90564 -13.74880 -13.53866 -13.40955 -12.64649 -12.55026 -12.36291 -12.32233 -12.13614 -11.77612 -11.70029 -11.54847 -11.44964 -11.19900 -11.15009 -10.97605 -10.89470 -10.82557 -10.62106 -10.41626 -10.31444 -10.24860 -10.02313 -9.68404 -9.55894 -8.78384 -8.43618 -7.67138 -6.05251 -4.08863 1.85372 3.27684 3.32552 3.35855 3.40377 3.79652 4.01068 4.42524 4.49975 4.61798 4.70795 4.82617 4.92079 4.96489 5.03973 5.07818 5.25651 5.28948 5.34505 5.40964 5.50362 5.54361 5.55238 5.59091 5.73556 5.76503 5.81548 5.87358 5.94687 5.98999 6.04721 6.12303 6.15555 6.21863 6.30470 6.35103 6.39055 6.55050 6.89891 7.10240 7.40018 7.46745 7.54886 7.91681 8.23647 8.41757 8.89491 9.07660 9.55530 11.02854 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019986 B = 0.004841 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.634647 B = 5783.116544 C = 5990.689722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 C -0.162 4.162 4 N -0.591 5.591 5 C 0.243 3.757 6 C -0.521 4.521 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.511 3.489 15 O -0.539 6.539 16 C -0.116 4.116 17 H 0.106 0.894 18 C -0.104 4.104 19 C -0.130 4.130 20 C -0.134 4.134 21 C -0.111 4.111 22 C -0.178 4.178 23 C 0.374 3.626 24 O -0.464 6.464 25 C -0.162 4.162 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.036 0.964 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 -2.065 -17.473 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.025 3.975 3 C -0.220 4.220 4 N -0.323 5.323 5 C 0.124 3.876 6 C -0.559 4.559 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.297 3.703 15 O -0.416 6.416 16 C -0.137 4.137 17 H 0.124 0.876 18 C -0.142 4.142 19 C -0.168 4.168 20 C -0.172 4.172 21 C -0.148 4.148 22 C -0.216 4.216 23 C 0.250 3.750 24 O -0.338 6.338 25 C -0.200 4.200 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.122 0.878 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.602 -2.924 -17.040 17.484 hybrid contribution 0.511 0.973 0.574 1.240 sum 3.113 -1.951 -16.466 16.871 Atomic orbital electron populations 1.22164 0.95316 1.01914 1.02712 1.21085 0.94366 0.94000 0.88038 1.22204 1.01219 0.95935 1.02598 1.48331 1.44404 1.30868 1.08698 1.19278 0.95211 0.95828 0.77259 1.21435 1.11279 1.21220 1.02011 0.92361 1.24920 0.95498 0.97128 0.96557 1.69924 1.28393 1.42992 1.12046 0.86562 0.81396 0.81656 0.78202 1.20686 1.21175 1.19957 1.20153 0.79636 0.80736 0.89736 1.90669 1.59229 1.51883 1.39828 1.21717 0.96269 0.99163 0.96578 0.87650 1.21602 0.93082 1.02821 0.96697 1.21872 1.00925 0.97930 0.96037 1.21984 1.00484 0.98357 0.96337 1.21617 0.92671 1.02507 0.98020 1.22229 0.99597 0.97965 1.01816 1.24357 0.69873 0.90157 0.90611 1.90395 1.37474 1.33613 1.72295 1.22146 1.02031 1.01568 0.94298 0.90943 0.92193 0.92868 0.90850 0.92841 0.93153 0.89858 0.94659 0.93957 0.92779 0.90872 0.90765 0.91444 0.91900 0.90501 0.91418 0.90780 0.91057 0.88779 0.88992 0.87779 0.88172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.07 37.16 0.34 -1.89 16 2 C 0.13 1.92 2.98 -67.93 -0.20 1.72 16 3 C -0.16 -2.42 8.61 37.16 0.32 -2.10 16 4 N -0.59 -11.63 2.39 -167.47 -0.40 -12.03 16 5 C 0.24 6.04 4.77 -5.20 -0.02 6.02 16 6 C -0.52 -13.98 7.85 -34.44 -0.27 -14.25 16 7 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 10 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.51 10.03 6.56 -10.98 -0.07 9.96 16 15 O -0.54 -13.11 16.00 5.56 0.09 -13.02 16 16 C -0.12 -1.63 1.25 -91.60 -0.11 -1.75 16 17 H 0.11 1.28 1.84 -51.93 -0.10 1.18 16 18 C -0.10 -1.44 4.55 -26.37 -0.12 -1.56 16 19 C -0.13 -1.44 5.38 -26.47 -0.14 -1.58 16 20 C -0.13 -1.27 5.51 -26.43 -0.15 -1.41 16 21 C -0.11 -0.94 5.63 -26.64 -0.15 -1.09 16 22 C -0.18 -1.59 5.45 -28.17 -0.15 -1.75 16 23 C 0.37 4.40 4.17 -29.40 -0.12 4.28 16 24 O -0.46 -6.78 17.40 6.00 0.10 -6.68 16 25 C -0.16 -2.07 5.14 -28.11 -0.14 -2.21 16 26 H 0.07 1.16 6.52 -51.93 -0.34 0.82 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.87 3.95 -51.93 -0.21 0.66 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.52 6.93 -51.93 -0.36 1.16 16 33 H 0.04 0.89 6.17 -51.93 -0.32 0.57 16 34 H 0.04 1.22 7.35 -51.93 -0.38 0.84 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 37 H 0.07 1.09 7.86 -51.93 -0.41 0.69 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.74 5.64 -51.93 -0.29 0.44 16 40 H 0.08 0.77 5.52 -51.93 -0.29 0.48 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.67 7.56 -51.93 -0.39 0.27 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.74 4.75 -51.93 -0.25 0.49 16 46 H 0.10 1.24 8.05 -51.93 -0.42 0.83 16 47 H 0.10 1.37 7.85 -51.93 -0.41 0.96 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -32.27 351.37 -7.79 -40.06 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.49 Total: 1.30 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.10 Total: -6.03 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.34 Total: -37.24 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.19 Total: -19.70 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.27 -7.79 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575234470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.276 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds