Wall clock time and date at job start Tue Mar 31 2020 06:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47200 * 2 1 4 4 N 1.46499 * 109.47211 * 120.00268 * 2 1 3 5 5 C 1.46496 * 119.99938 * 305.15932 * 4 2 1 6 6 C 1.50701 * 109.47623 * 269.99995 * 5 4 2 7 7 H 1.07998 * 119.99478 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00225 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00141 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00009 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47334 * 89.99589 * 10 8 6 12 12 H 1.48497 * 109.47298 * 209.99757 * 10 8 6 13 13 H 1.48499 * 109.47133 * 329.99852 * 10 8 6 14 14 C 1.34779 * 120.00139 * 125.16596 * 4 2 1 15 15 O 1.21282 * 119.99889 * 185.52327 * 14 4 2 16 16 C 1.50702 * 119.99905 * 5.51512 * 14 4 2 17 17 H 1.08998 * 109.47785 * 25.40739 * 16 14 4 18 18 C 1.52658 * 109.48900 * 145.43383 * 16 14 4 19 19 C 1.54023 * 110.40692 * 193.53823 * 18 16 14 20 20 C 1.52460 * 111.04766 * 44.78569 * 19 18 16 21 21 C 1.54097 * 109.26865 * 245.78531 * 20 19 18 22 22 C 1.52047 * 109.16311 * 78.00322 * 21 20 19 23 23 C 1.51111 * 109.14475 * 287.37293 * 22 21 20 24 24 O 1.20759 * 120.43443 * 291.42593 * 23 22 21 25 25 C 1.49512 * 119.14054 * 111.14930 * 23 22 21 26 26 H 1.09002 * 109.47056 * 299.99510 * 1 2 3 27 27 H 1.08997 * 109.47108 * 59.99666 * 1 2 3 28 28 H 1.09004 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47481 * 240.00197 * 2 1 3 30 30 H 1.09002 * 109.47345 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47362 * 300.00178 * 3 2 1 32 32 H 1.09002 * 109.46716 * 60.00282 * 3 2 1 33 33 H 1.08998 * 109.47419 * 30.00451 * 5 4 2 34 34 H 1.09001 * 109.46912 * 150.00064 * 5 4 2 35 35 H 0.96996 * 120.00540 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.31281 * 313.82012 * 18 16 14 37 37 H 1.08995 * 109.31960 * 73.43705 * 18 16 14 38 38 H 1.08993 * 109.16576 * 165.19398 * 19 18 16 39 39 H 1.09006 * 109.16249 * 284.44056 * 19 18 16 40 40 H 1.08996 * 109.50489 * 5.72862 * 20 19 18 41 41 H 1.09002 * 109.50396 * 125.85051 * 20 19 18 42 42 H 1.08997 * 109.52078 * 197.90282 * 21 20 19 43 43 H 1.08995 * 109.52328 * 318.03438 * 21 20 19 44 44 H 1.08996 * 109.52444 * 167.47554 * 22 21 20 45 45 H 1.09003 * 109.52717 * 47.27750 * 22 21 20 46 46 H 1.08996 * 109.79803 * 76.56179 * 25 23 22 47 47 H 1.08999 * 109.79552 * 197.36510 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.5737 -0.2595 2.5237 6 6 2.5163 0.7905 3.0529 7 1 3.3618 1.1055 2.4593 8 6 2.2993 1.3490 4.2946 9 7 1.2695 0.9658 5.0171 10 14 3.4674 2.6511 4.9501 11 1 2.9919 3.9959 4.5369 12 1 3.5113 2.5755 6.4325 13 1 4.8275 2.4170 4.4020 14 6 2.8768 -1.7226 1.0752 15 8 3.2030 -2.3581 2.0553 16 6 3.4311 -2.0870 -0.2780 17 1 3.4181 -1.2095 -0.9244 18 6 4.8660 -2.5844 -0.1235 19 6 5.5652 -2.6416 -1.4947 20 6 5.2857 -1.3807 -2.3049 21 6 4.4501 -1.7487 -3.5462 22 6 3.0005 -1.9453 -3.1317 23 6 2.8756 -3.2417 -2.3654 24 8 3.0253 -4.3007 -2.9263 25 6 2.5704 -3.1963 -0.9025 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.5688 0.1568 2.4530 34 1 1.5659 -1.1146 3.1997 35 1 1.1166 1.3590 5.8906 36 1 5.4136 -1.9074 0.5324 37 1 4.8566 -3.5822 0.3152 38 1 6.6403 -2.7394 -1.3444 39 1 5.2009 -3.5084 -2.0462 40 1 4.7327 -0.6693 -1.6917 41 1 6.2287 -0.9343 -2.6203 42 1 4.5133 -0.9446 -4.2793 43 1 4.8332 -2.6709 -3.9829 44 1 2.3698 -1.9849 -4.0198 45 1 2.6871 -1.1158 -2.4978 46 1 1.5143 -2.9728 -0.7524 47 1 2.8135 -4.1552 -0.4447 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575234470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:55 Heat of formation + Delta-G solvation = -109.696593 kcal Electronic energy + Delta-G solvation = -26141.130069 eV Core-core repulsion = 22708.594350 eV Total energy + Delta-G solvation = -3432.535719 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.91946 -40.41454 -37.86182 -37.48562 -34.98477 -34.30458 -32.60396 -32.39543 -29.59781 -28.04544 -27.53564 -26.89287 -24.89133 -23.17741 -22.71216 -21.34887 -20.15968 -19.39189 -18.62948 -18.54774 -17.17674 -16.90730 -16.62227 -16.22611 -15.95105 -15.64030 -15.42728 -14.92498 -14.86639 -14.76453 -14.71881 -14.24843 -13.86401 -13.58954 -13.38272 -13.31232 -13.14745 -13.05274 -12.84398 -12.76871 -12.67066 -12.45122 -12.35736 -12.18940 -12.08019 -12.03301 -11.74940 -11.57664 -11.44708 -11.28185 -11.19022 -10.77378 -10.58439 -10.26831 -9.39855 -8.17733 -6.29501 0.91288 1.37045 1.39935 1.49263 1.79460 2.28511 2.44596 3.06872 3.12732 3.53667 3.56533 3.75131 3.78075 3.95580 3.99482 4.08461 4.17976 4.22650 4.32655 4.37071 4.47377 4.49966 4.59459 4.77496 4.82914 4.86010 4.89850 4.91673 4.94540 5.04652 5.09597 5.12746 5.15241 5.18704 5.20976 5.26939 5.30015 5.34332 5.47563 5.50268 5.63428 5.67787 5.91236 6.13410 6.48355 6.76292 6.85068 7.33069 7.50816 8.89623 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.019986 B = 0.004841 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.634647 B = 5783.116544 C = 5990.689722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 C -0.158 4.158 4 N -0.593 5.593 5 C 0.260 3.740 6 C -0.525 4.525 7 H 0.057 0.943 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.960 3.040 11 H -0.264 1.264 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.501 3.499 15 O -0.598 6.598 16 C -0.096 4.096 17 H 0.135 0.865 18 C -0.105 4.105 19 C -0.122 4.122 20 C -0.135 4.135 21 C -0.107 4.107 22 C -0.175 4.175 23 C 0.382 3.618 24 O -0.493 6.493 25 C -0.165 4.165 26 H 0.039 0.961 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.114 0.886 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.043 0.957 33 H 0.029 0.971 34 H -0.010 1.010 35 H 0.264 0.736 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.118 0.882 45 H 0.106 0.894 46 H 0.115 0.885 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 -0.157 -21.064 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 C -0.216 4.216 4 N -0.324 5.324 5 C 0.138 3.862 6 C -0.563 4.563 7 H 0.075 0.925 8 C -0.192 4.192 9 N -0.571 5.571 10 Si 0.785 3.215 11 H -0.189 1.189 12 H -0.212 1.212 13 H -0.197 1.197 14 C 0.290 3.710 15 O -0.480 6.480 16 C -0.117 4.117 17 H 0.152 0.848 18 C -0.143 4.143 19 C -0.160 4.160 20 C -0.172 4.172 21 C -0.145 4.145 22 C -0.213 4.213 23 C 0.261 3.739 24 O -0.369 6.369 25 C -0.203 4.203 26 H 0.058 0.942 27 H 0.120 0.880 28 H 0.074 0.926 29 H 0.132 0.868 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.008 0.992 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.136 0.864 45 H 0.124 0.876 46 H 0.133 0.867 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.204 -0.988 -20.683 20.953 hybrid contribution 0.293 0.322 1.711 1.765 sum 3.497 -0.666 -18.972 19.303 Atomic orbital electron populations 1.22156 0.94197 1.02295 1.03149 1.21543 0.95380 0.94187 0.87069 1.22165 1.00956 0.95613 1.02864 1.48367 1.44293 1.31223 1.08475 1.18705 0.94891 0.93219 0.79345 1.21676 1.11235 1.21226 1.02208 0.92455 1.25789 0.97089 0.99385 0.96944 1.70054 1.30187 1.44441 1.12453 0.85528 0.79162 0.79573 0.77251 1.18863 1.21245 1.19714 1.21175 0.78734 0.79751 0.91333 1.90635 1.61113 1.53802 1.42402 1.21631 0.96105 1.00705 0.93261 0.84805 1.21595 0.93117 1.01197 0.98388 1.21830 1.01001 0.99055 0.94097 1.22023 1.01748 0.97000 0.96465 1.21635 0.91700 1.03220 0.97915 1.22310 1.00596 0.95858 1.02494 1.24558 0.68517 0.91158 0.89705 1.90400 1.38930 1.35104 1.72515 1.22174 1.02387 1.00096 0.95628 0.94183 0.87989 0.92591 0.86807 0.93226 0.88692 0.93732 0.95294 0.99178 0.92711 0.92740 0.92691 0.90572 0.92422 0.90697 0.89722 0.87874 0.91840 0.86399 0.87577 0.86683 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 9.07 71.98 0.65 -3.39 16 2 C 0.12 3.32 2.98 44.99 0.13 3.45 16 3 C -0.16 -4.32 8.61 71.98 0.62 -3.70 16 4 N -0.59 -23.72 2.39 -802.14 -1.92 -25.63 16 5 C 0.26 13.58 4.77 85.63 0.41 13.99 16 6 C -0.52 -29.09 7.85 25.60 0.20 -28.88 16 7 H 0.06 3.12 7.59 -2.91 -0.02 3.09 16 8 C 0.01 0.36 5.46 84.65 0.46 0.82 16 9 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 10 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 11 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 14 C 0.50 20.22 6.56 87.66 0.57 20.80 16 15 O -0.60 -31.00 16.00 -3.04 -0.05 -31.04 16 16 C -0.10 -2.63 1.25 -11.43 -0.01 -2.65 16 17 H 0.13 2.83 1.84 -2.39 0.00 2.82 16 18 C -0.10 -2.92 4.55 30.83 0.14 -2.78 16 19 C -0.12 -2.49 5.38 30.76 0.17 -2.32 16 20 C -0.14 -2.03 5.51 30.79 0.17 -1.86 16 21 C -0.11 -1.32 5.63 30.65 0.17 -1.14 16 22 C -0.18 -2.29 5.45 29.66 0.16 -2.13 16 23 C 0.38 8.06 4.17 28.86 0.12 8.19 16 24 O -0.49 -13.62 17.40 -1.45 -0.03 -13.64 16 25 C -0.16 -4.04 5.14 29.70 0.15 -3.88 16 26 H 0.04 1.27 6.52 -2.39 -0.02 1.26 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.11 2.20 3.95 -2.38 -0.01 2.19 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.58 6.93 -2.39 -0.02 1.56 16 33 H 0.03 1.54 6.17 -2.39 -0.01 1.53 16 34 H -0.01 -0.62 7.35 -2.39 -0.02 -0.63 16 35 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 36 H 0.05 1.71 8.06 -2.38 -0.02 1.69 16 37 H 0.05 1.71 7.86 -2.39 -0.02 1.69 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.26 5.64 -2.38 -0.01 1.24 16 40 H 0.07 1.17 5.52 -2.39 -0.01 1.16 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.94 7.56 -2.39 -0.02 0.92 16 44 H 0.12 1.12 8.14 -2.39 -0.02 1.11 16 45 H 0.11 1.07 4.75 -2.39 -0.01 1.06 16 46 H 0.12 2.57 8.05 -2.39 -0.02 2.55 16 47 H 0.08 2.33 7.85 -2.39 -0.02 2.31 16 Total: -1.00 -76.26 351.37 5.41 -70.85 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.96 Total: 14.28 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 4.12 Total: -5.51 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -1.63 Total: -81.28 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -0.07 Total: -44.69 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -76.26 5.41 -70.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575234470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.842 kcal (2) G-P(sol) polarization free energy of solvation -76.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds