Wall clock time and date at job start Tue Mar 31 2020 08:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00523 * 2 1 4 4 C 1.52993 * 109.47497 * 179.97438 * 3 2 1 5 5 C 1.50696 * 110.43519 * 304.93436 * 4 3 2 6 6 O 1.21285 * 120.00267 * 109.78308 * 5 4 3 7 7 N 1.34783 * 120.00093 * 290.05665 * 5 4 3 8 8 C 1.46930 * 120.62716 * 4.22706 * 7 5 4 9 9 C 1.53624 * 108.53660 * 126.36929 * 8 7 5 10 10 C 1.53040 * 109.24267 * 54.86078 * 9 8 7 11 11 C 1.50699 * 109.46343 * 178.48636 * 10 9 8 12 12 H 1.08002 * 120.00053 * 120.06457 * 11 10 9 13 13 C 1.37873 * 120.00001 * 300.06873 * 11 10 9 14 14 N 1.31520 * 120.00022 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00062 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47109 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46772 * 119.99894 * 15 13 11 18 18 H 1.48494 * 109.47473 * 239.99728 * 15 13 11 19 19 C 1.53040 * 109.53878 * 298.50816 * 10 9 8 20 20 C 1.46921 * 120.63192 * 184.51654 * 7 5 4 21 21 C 1.54886 * 110.59796 * 67.55012 * 4 3 2 22 22 C 1.54898 * 102.75135 * 156.67563 * 21 4 3 23 23 C 1.54268 * 104.19355 * 322.06261 * 22 21 4 24 24 C 1.53876 * 106.60027 * 23.60230 * 23 22 21 25 25 H 1.08995 * 109.47422 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46746 * 299.99920 * 1 2 3 27 27 H 1.08997 * 109.46980 * 59.99270 * 1 2 3 28 28 H 1.09003 * 109.46833 * 59.99778 * 3 2 1 29 29 H 1.09004 * 109.47192 * 300.00568 * 3 2 1 30 30 H 1.08991 * 109.58866 * 246.20214 * 8 7 5 31 31 H 1.08998 * 109.58266 * 6.63158 * 8 7 5 32 32 H 1.09003 * 109.63941 * 294.86994 * 9 8 7 33 33 H 1.09000 * 109.42977 * 174.72175 * 9 8 7 34 34 H 1.09001 * 109.46422 * 58.52780 * 10 9 8 35 35 H 0.96993 * 119.99775 * 180.02562 * 14 13 11 36 36 H 1.09009 * 109.49704 * 301.41313 * 19 10 9 37 37 H 1.08995 * 109.50191 * 181.31621 * 19 10 9 38 38 H 1.09007 * 109.58947 * 353.36589 * 20 7 5 39 39 H 1.08996 * 109.59145 * 113.79440 * 20 7 5 40 40 H 1.09000 * 110.75831 * 274.99251 * 21 4 3 41 41 H 1.08996 * 110.75960 * 38.36519 * 21 4 3 42 42 H 1.08993 * 110.48612 * 203.38091 * 22 21 4 43 43 H 1.09000 * 110.48201 * 80.73774 * 22 21 4 44 44 H 1.09000 * 110.02750 * 264.32447 * 23 22 21 45 45 H 1.08998 * 110.07566 * 142.91598 * 23 22 21 46 46 H 1.08997 * 110.03640 * 240.71846 * 24 23 22 47 47 H 1.09004 * 110.07134 * 119.30808 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9956 0.3371 1.1587 6 8 4.4548 -0.7673 0.9572 7 7 3.8919 0.8041 2.4187 8 6 3.2484 2.0975 2.6870 9 6 2.1458 1.8862 3.7356 10 6 2.7479 1.2156 4.9725 11 6 1.6781 1.0397 6.0192 12 1 1.4275 0.0510 6.3745 13 6 1.0191 2.1408 6.5233 14 7 1.3245 3.3448 6.0910 15 14 -0.3075 1.9227 7.8202 16 1 -0.4599 0.4794 8.1345 17 1 0.0779 2.6588 9.0511 18 1 -1.5945 2.4566 7.3067 19 6 3.3148 -0.1529 4.5879 20 6 4.4257 0.0326 3.5494 21 6 4.0355 0.5893 -1.3390 22 6 5.4987 1.0923 -1.4116 23 6 5.4360 2.5226 -0.8369 24 6 4.1878 2.5812 0.0609 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.9881 2.8018 3.0674 31 1 2.8104 2.4854 1.7673 32 1 1.3634 1.2501 3.3216 33 1 1.7215 2.8506 4.0150 34 1 3.5469 1.8405 5.3717 35 1 0.8611 4.1195 6.4460 36 1 2.5214 -0.7698 4.1657 37 1 3.7226 -0.6398 5.4737 38 1 4.7648 -0.9423 3.1990 39 1 5.2595 0.5720 3.9986 40 1 4.0022 -0.4999 -1.3141 41 1 3.4524 0.9756 -2.1749 42 1 5.8448 1.1112 -2.4450 43 1 6.1486 0.4644 -0.8021 44 1 5.3477 3.2468 -1.6468 45 1 6.3297 2.7286 -0.2479 46 1 3.4937 3.3339 -0.3131 47 1 4.4750 2.8152 1.0861 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578493292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:51 Heat of formation + Delta-G solvation = -89.624319 kcal Electronic energy + Delta-G solvation = -26233.918964 eV Core-core repulsion = 22802.253644 eV Total energy + Delta-G solvation = -3431.665320 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66045 -37.84008 -37.05329 -36.33309 -33.54934 -31.71520 -30.55259 -29.82922 -28.56653 -26.66536 -26.20685 -24.27248 -23.45551 -22.43460 -21.27158 -20.38580 -19.32386 -18.10995 -16.83224 -16.30225 -15.99356 -15.85592 -15.59907 -15.23731 -14.76688 -14.55695 -14.10720 -13.75736 -13.37997 -13.21559 -12.97400 -12.88326 -12.69990 -12.26388 -12.04588 -11.67007 -11.46434 -11.41641 -11.39701 -11.10195 -11.00426 -10.93064 -10.81411 -10.64517 -10.56945 -10.43412 -10.30515 -10.09489 -9.63008 -9.55443 -9.17575 -9.13558 -8.82211 -8.38927 -7.90932 -6.04637 -4.10237 3.12469 3.25491 3.34189 3.38747 3.51812 3.79418 4.39695 4.49604 4.62425 4.77860 5.01349 5.17815 5.23666 5.27257 5.39486 5.43626 5.45446 5.52481 5.54638 5.64636 5.66443 5.78698 5.82321 5.84935 5.89852 5.93889 5.98672 6.04904 6.11675 6.16769 6.23416 6.31262 6.32423 6.45683 6.50626 6.69461 6.95309 7.06387 7.18909 7.22568 7.29390 7.66132 7.91904 8.01400 8.05227 8.39954 8.71736 8.93487 9.54823 11.00869 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.020018 B = 0.004791 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.426158 B = 5842.882756 C = 6172.319902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.068 3.932 4 C -0.079 4.079 5 C 0.538 3.462 6 O -0.550 6.550 7 N -0.600 5.600 8 C 0.092 3.908 9 C -0.123 4.123 10 C 0.049 3.951 11 C -0.509 4.509 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.889 3.111 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.285 1.285 19 C -0.123 4.123 20 C 0.113 3.887 21 C -0.096 4.096 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.125 4.125 25 H 0.084 0.916 26 H 0.045 0.955 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.103 0.897 34 H 0.027 0.973 35 H 0.259 0.741 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.329 0.711 -14.223 14.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.009 4.009 4 C -0.082 4.082 5 C 0.325 3.675 6 O -0.429 6.429 7 N -0.332 5.332 8 C -0.029 4.029 9 C -0.161 4.161 10 C 0.031 3.969 11 C -0.547 4.547 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.161 4.161 20 C -0.009 4.009 21 C -0.133 4.133 22 C -0.163 4.163 23 C -0.160 4.160 24 C -0.162 4.162 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.121 0.879 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.635 0.148 -14.272 14.729 hybrid contribution -1.146 0.353 0.855 1.472 sum 2.489 0.501 -13.417 13.656 Atomic orbital electron populations 1.22737 0.81071 1.02740 0.99937 1.87964 1.19546 1.26990 1.95344 1.22807 0.91237 0.85693 1.01151 1.21576 0.94344 0.96435 0.95883 1.19944 0.77790 0.86356 0.83378 1.90592 1.47056 1.20563 1.84648 1.48102 1.57730 1.21661 1.05711 1.22467 0.96579 0.83766 1.00125 1.22099 0.95342 1.04197 0.94481 1.18625 0.95480 0.90245 0.92584 1.21259 1.19408 0.92978 1.21059 0.92680 1.24949 0.97074 0.95293 0.96636 1.69847 1.42259 0.97827 1.43274 0.86579 0.81765 0.78238 0.81691 1.19829 1.21048 1.21098 1.21993 0.96729 1.00936 0.96414 1.21657 0.96562 0.95980 0.86715 1.22353 0.95128 1.02115 0.93740 1.22376 0.97356 0.95928 1.00643 1.22129 0.97676 0.97413 0.98777 1.22518 0.97299 0.94408 1.01995 0.89738 0.93611 0.94422 0.91467 0.92662 0.92072 0.90621 0.94322 0.87928 0.95530 0.93089 0.92945 0.92319 0.90434 0.92449 0.89704 0.91301 0.91717 0.91254 0.91694 0.91764 0.90650 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.13 10.09 -35.23 -0.36 -6.49 16 3 C 0.07 0.96 4.47 37.15 0.17 1.12 16 4 C -0.08 -1.15 0.35 -154.01 -0.05 -1.20 16 5 C 0.54 9.86 5.83 -10.98 -0.06 9.79 16 6 O -0.55 -11.68 15.09 5.55 0.08 -11.60 16 7 N -0.60 -11.10 2.90 -172.50 -0.50 -11.60 16 8 C 0.09 1.65 4.05 -3.48 -0.01 1.63 16 9 C -0.12 -2.68 5.17 -26.39 -0.14 -2.82 16 10 C 0.05 1.17 2.06 -91.73 -0.19 0.98 16 11 C -0.51 -13.54 8.56 -34.44 -0.29 -13.84 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 14 N -0.89 -24.19 11.31 55.43 0.63 -23.56 16 15 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.12 -2.58 5.30 -26.61 -0.14 -2.72 16 20 C 0.11 2.15 6.44 -3.71 -0.02 2.13 16 21 C -0.10 -1.28 5.44 -24.74 -0.13 -1.41 16 22 C -0.13 -1.49 6.60 -25.07 -0.17 -1.66 16 23 C -0.12 -1.32 6.80 -25.61 -0.17 -1.50 16 24 C -0.12 -1.51 4.63 -25.61 -0.12 -1.62 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.99 5.51 -51.93 -0.29 0.71 16 29 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.06 1.07 7.87 -51.93 -0.41 0.66 16 31 H 0.08 1.17 3.02 -51.93 -0.16 1.01 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 2.47 6.03 -51.93 -0.31 2.16 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.05 1.16 8.14 -51.92 -0.42 0.74 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.08 1.49 7.00 -51.92 -0.36 1.13 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 1.33 7.27 -51.93 -0.38 0.96 16 41 H 0.07 0.78 8.01 -51.93 -0.42 0.37 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.76 7.84 -51.93 -0.41 0.36 16 47 H 0.08 1.11 5.17 -51.93 -0.27 0.84 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -29.91 351.82 -8.22 -38.13 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.03 Total: 2.16 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -0.33 Total: -8.08 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.13 Total: -35.16 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.27 Total: -18.08 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.91 -8.22 -38.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578493292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.497 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds