Wall clock time and date at job start Tue Mar 31 2020 07:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99661 * 2 1 4 4 C 1.53010 * 109.47312 * 124.99908 * 3 2 1 5 5 O 1.42896 * 109.47079 * 179.97438 * 4 3 2 6 6 C 1.42903 * 113.99546 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47408 * 29.99826 * 6 5 4 8 8 C 1.53001 * 109.46947 * 269.99636 * 6 5 4 9 9 C 1.50698 * 109.46837 * 150.00029 * 6 5 4 10 10 O 1.21276 * 120.00564 * 4.99982 * 9 6 5 11 11 N 1.34784 * 119.99966 * 184.99680 * 9 6 5 12 12 C 1.46919 * 120.63188 * 179.97438 * 11 9 6 13 13 C 1.53195 * 108.89273 * 233.51696 * 12 11 9 14 14 C 1.53070 * 109.29524 * 305.57804 * 13 12 11 15 15 C 1.52997 * 109.45504 * 181.24323 * 14 13 12 16 16 C 1.50697 * 109.47246 * 64.78853 * 15 14 13 17 17 H 1.08001 * 119.99754 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00470 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99586 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00183 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47251 * 90.00296 * 20 18 16 22 22 H 1.48510 * 109.47136 * 210.00195 * 20 18 16 23 23 H 1.48497 * 109.47362 * 330.00321 * 20 18 16 24 24 C 1.53039 * 109.65812 * 61.15209 * 14 13 12 25 25 C 1.46928 * 120.62829 * 359.97438 * 11 9 6 26 26 H 1.08001 * 120.00004 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00323 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00062 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47331 * 4.99750 * 3 2 1 30 30 H 1.09006 * 109.47143 * 244.99532 * 3 2 1 31 31 H 1.08999 * 109.47052 * 59.99671 * 4 3 2 32 32 H 1.08997 * 109.46300 * 300.00303 * 4 3 2 33 33 H 1.08994 * 109.47222 * 300.00304 * 8 6 5 34 34 H 1.09005 * 109.46941 * 60.00400 * 8 6 5 35 35 H 1.09000 * 109.47074 * 179.97438 * 8 6 5 36 36 H 1.09002 * 109.58751 * 353.37646 * 12 11 9 37 37 H 1.08996 * 109.58750 * 113.65831 * 12 11 9 38 38 H 1.08997 * 109.50046 * 65.38734 * 13 12 11 39 39 H 1.09003 * 109.49733 * 185.48713 * 13 12 11 40 40 H 1.09007 * 109.35101 * 301.12962 * 14 13 12 41 41 H 1.08997 * 109.47497 * 184.78921 * 15 14 13 42 42 H 1.08997 * 109.47002 * 304.78963 * 15 14 13 43 43 H 0.96997 * 119.99553 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.49876 * 178.74890 * 24 14 13 45 45 H 1.09005 * 109.52615 * 58.67140 * 24 14 13 46 46 H 1.08998 * 109.58787 * 246.20220 * 25 11 9 47 47 H 1.09007 * 109.58600 * 6.48533 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 8 3.7498 2.5705 1.1813 6 6 4.6893 2.6993 2.2504 7 1 5.0657 1.7136 2.5240 8 6 4.0017 3.3364 3.4596 9 6 5.8369 3.5703 1.8083 10 8 5.8063 4.1086 0.7221 11 7 6.8974 3.7511 2.6203 12 6 8.0240 4.5968 2.2032 13 6 9.3224 3.7948 2.3365 14 6 9.4360 3.2496 3.7623 15 6 10.7466 2.4738 3.9083 16 6 11.9100 3.4175 3.7434 17 1 11.7322 4.4658 3.5538 18 6 13.2011 2.9428 3.8355 19 7 13.4175 1.6663 4.0668 20 14 14.6431 4.1124 3.6303 21 1 15.0187 4.6720 4.9536 22 1 15.7993 3.3772 3.0575 23 1 14.2577 5.2179 2.7168 24 6 8.2571 2.3180 4.0528 25 6 6.9487 3.1060 3.9395 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3584 2.1316 0.0895 30 1 2.6213 1.4026 -0.9314 31 1 3.7399 0.5067 1.0922 32 1 2.4771 1.2356 2.1130 33 1 3.6254 4.3221 3.1859 34 1 3.1716 2.7064 3.7793 35 1 4.7182 3.4342 4.2752 36 1 7.8876 4.9016 1.1656 37 1 8.0731 5.4801 2.8399 38 1 9.3107 2.9638 1.6312 39 1 10.1732 4.4418 2.1231 40 1 9.4252 4.0800 4.4684 41 1 10.7888 2.0142 4.8957 42 1 10.7968 1.6983 3.1441 43 1 14.3259 1.3324 4.1312 44 1 8.3524 1.9140 5.0607 45 1 8.2527 1.5003 3.3320 46 1 6.9115 3.8663 4.7197 47 1 6.1014 2.4289 4.0483 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582548738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:11 Heat of formation + Delta-G solvation = -81.051259 kcal Electronic energy + Delta-G solvation = -24064.149907 eV Core-core repulsion = 20632.856343 eV Total energy + Delta-G solvation = -3431.293564 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.34485 -38.34851 -37.11895 -35.37492 -34.17277 -32.49274 -31.74017 -30.45808 -29.22272 -28.05706 -25.27167 -24.09779 -23.24125 -22.67940 -21.62473 -20.27120 -19.83991 -18.77210 -17.37606 -16.84338 -16.26739 -16.07173 -15.73266 -15.30926 -14.86212 -14.55611 -14.33464 -13.96927 -13.69280 -13.55918 -13.27638 -13.00613 -12.92466 -12.70511 -12.50096 -12.42415 -12.09484 -11.76358 -11.47672 -11.42377 -11.35837 -11.18265 -11.04962 -10.77582 -10.71581 -10.43030 -10.21639 -10.03550 -9.71286 -9.66830 -9.41504 -9.27818 -8.98692 -8.38897 -8.35578 -6.01835 -4.03625 1.87028 2.68929 2.78992 3.30401 3.37322 3.40176 3.66100 4.40240 4.44274 4.59216 4.65675 4.73178 4.82320 4.91009 4.98615 5.04496 5.12831 5.24826 5.32234 5.34076 5.37844 5.48247 5.48861 5.54116 5.63340 5.64309 5.73725 5.77700 5.88513 5.94719 6.05078 6.25608 6.30769 6.33465 6.38104 6.49897 6.61213 6.88722 6.96885 7.00233 7.09157 7.52902 7.63737 7.78182 7.97572 8.28433 8.40241 9.02722 9.60392 11.09419 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.029733 B = 0.002622 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.476090 B =10677.840539 C =10866.394520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C -0.093 4.093 4 C 0.063 3.937 5 O -0.358 6.358 6 C 0.073 3.927 7 H 0.086 0.914 8 C -0.178 4.178 9 C 0.515 3.485 10 O -0.528 6.528 11 N -0.603 5.603 12 C 0.110 3.890 13 C -0.118 4.118 14 C -0.081 4.081 15 C 0.028 3.972 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.131 4.131 25 C 0.100 3.900 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.904 -1.673 -1.354 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.170 4.170 3 C -0.130 4.130 4 C -0.013 4.013 5 O -0.276 6.276 6 C 0.011 3.989 7 H 0.103 0.897 8 C -0.235 4.235 9 C 0.301 3.699 10 O -0.404 6.404 11 N -0.338 5.338 12 C -0.012 4.012 13 C -0.156 4.156 14 C -0.100 4.100 15 C -0.009 4.009 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.170 4.170 25 C -0.022 4.022 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.816 -1.359 -2.071 22.950 hybrid contribution 1.009 0.189 0.232 1.053 sum -21.807 -1.170 -1.839 21.915 Atomic orbital electron populations 1.23895 0.95868 1.02018 1.00870 1.22827 0.96021 0.98074 1.00113 1.20643 0.97871 0.95804 0.98712 1.22537 0.94139 0.86278 0.98370 1.88019 1.53706 1.37151 1.48730 1.21860 0.89392 0.99230 0.88376 0.89661 1.22416 1.01715 1.02493 0.96907 1.20275 0.82941 0.82018 0.84658 1.90686 1.79354 1.48976 1.21404 1.48097 1.18860 1.49227 1.17604 1.21784 0.85414 0.92749 1.01207 1.21906 0.95457 1.00050 0.98176 1.21198 0.95783 0.97664 0.95314 1.19120 0.89647 0.95119 0.97026 1.21235 0.90872 0.94826 1.48496 0.92570 1.25025 0.99048 0.95015 0.95436 1.69963 1.20772 1.13064 1.49724 0.86633 0.82314 0.81022 0.78265 1.20752 1.21310 1.19868 1.22046 0.94046 0.98765 1.02102 1.22032 0.99382 0.96765 0.84035 0.88316 0.88442 0.87112 0.90568 0.89833 0.92990 0.93063 0.91105 0.91336 0.90083 0.89638 0.91761 0.92365 0.89656 0.92289 0.96613 0.96650 0.93058 0.90932 0.91977 0.91160 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.23 14.32 29.01 0.42 -0.81 16 2 C -0.15 -1.10 9.52 -36.03 -0.34 -1.45 16 3 C -0.09 -0.81 6.03 -27.88 -0.17 -0.98 16 4 C 0.06 0.60 5.73 37.16 0.21 0.82 16 5 O -0.36 -4.71 9.53 -55.09 -0.52 -5.23 16 6 C 0.07 0.87 2.30 -27.88 -0.06 0.80 16 7 H 0.09 0.86 7.08 -51.93 -0.37 0.49 16 8 C -0.18 -1.63 9.10 37.16 0.34 -1.29 16 9 C 0.51 8.01 7.12 -10.98 -0.08 7.93 16 10 O -0.53 -10.36 15.92 -14.30 -0.23 -10.59 16 11 N -0.60 -8.77 2.97 -172.79 -0.51 -9.28 16 12 C 0.11 1.73 6.43 -3.71 -0.02 1.71 16 13 C -0.12 -2.13 5.19 -26.59 -0.14 -2.27 16 14 C -0.08 -1.52 2.10 -90.57 -0.19 -1.71 16 15 C 0.03 0.68 4.45 -27.89 -0.12 0.55 16 16 C -0.52 -13.93 8.39 -34.44 -0.29 -14.22 16 17 H 0.06 1.47 7.05 -52.49 -0.37 1.10 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 20 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.13 -1.97 5.36 -26.63 -0.14 -2.11 16 25 C 0.10 1.21 4.97 -3.73 -0.02 1.19 16 26 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 27 H 0.10 0.59 7.84 -52.49 -0.41 0.18 16 28 H 0.11 0.71 8.06 -52.49 -0.42 0.28 16 29 H 0.08 0.66 7.79 -51.93 -0.40 0.26 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.05 0.41 7.87 -51.93 -0.41 0.00 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 35 H 0.08 0.65 5.41 -51.93 -0.28 0.37 16 36 H 0.09 1.43 7.01 -51.93 -0.36 1.06 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.65 6.91 -51.93 -0.36 1.29 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.08 0.74 4.66 -51.92 -0.24 0.50 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -32.41 372.45 -8.89 -41.30 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -8.24 Total: -2.06 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -0.71 Total: -10.37 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.22 Total: -34.98 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.75 Total: -15.82 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.41 -8.89 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582548738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.748 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds