Wall clock time and date at job start Tue Mar 31 2020 06:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99997 * 2 1 4 4 O 1.42896 * 109.46841 * 135.00062 * 3 2 1 5 5 C 1.42906 * 113.99897 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47339 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47098 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.46931 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 C 1.50701 * 109.47085 * 295.13082 * 14 13 12 16 16 H 1.07998 * 120.00293 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99472 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00682 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99519 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47133 * 60.00060 * 19 17 15 21 21 H 1.48503 * 109.46942 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47295 * 299.99976 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 24 24 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 25 25 H 1.08002 * 120.00216 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.99948 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.99948 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47052 * 15.00019 * 3 2 1 29 29 H 1.08999 * 109.46881 * 255.00175 * 3 2 1 30 30 H 1.09005 * 109.46701 * 59.99526 * 5 4 3 31 31 H 1.09001 * 109.47169 * 300.00235 * 5 4 3 32 32 H 1.08996 * 109.46993 * 60.00277 * 6 5 4 33 33 H 1.09001 * 109.47240 * 300.00263 * 6 5 4 34 34 H 1.09001 * 109.46646 * 60.00027 * 7 6 5 35 35 H 1.09001 * 109.47188 * 300.00170 * 7 6 5 36 36 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 37 37 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 38 38 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 39 39 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 40 40 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 41 41 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 42 42 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 43 43 H 0.97001 * 120.00836 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.50232 * 301.42239 * 23 13 12 45 45 H 1.09007 * 109.52628 * 181.33900 * 23 13 12 46 46 H 1.08994 * 109.58580 * 353.38021 * 24 10 8 47 47 H 1.09006 * 109.57831 * 113.65514 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9085 2.4348 1.0321 6 6 5.0106 2.2541 2.0778 7 6 5.8471 3.5323 2.1633 8 6 6.9330 3.3540 3.1928 9 8 7.0287 2.3075 3.7983 10 7 7.7979 4.3575 3.4408 11 6 8.8614 4.1990 4.4420 12 6 10.2082 4.5310 3.7918 13 6 10.1335 5.9289 3.1658 14 6 11.4862 6.2804 2.5432 15 6 12.5276 6.3807 3.6280 16 1 12.2521 6.2112 4.6584 17 6 13.8320 6.6890 3.3049 18 7 14.1675 6.8959 2.0503 19 14 15.1226 6.8141 4.6495 20 1 15.2264 5.5135 5.3586 21 1 16.4356 7.1552 4.0452 22 1 14.7318 7.8738 5.6137 23 6 9.0529 5.9493 2.0824 24 6 7.6943 5.6313 2.7158 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3855 2.1160 0.2660 29 1 2.4755 1.4867 -0.9927 30 1 3.2689 3.2696 1.3191 31 1 4.3588 2.6395 0.0607 32 1 5.6501 1.4194 1.7911 33 1 4.5599 2.0496 3.0490 34 1 5.2072 4.3668 2.4502 35 1 6.2978 3.7372 1.1921 36 1 8.6815 4.8766 5.2766 37 1 8.8734 3.1705 4.8026 38 1 10.9926 4.5089 4.5483 39 1 10.4288 3.7970 3.0167 40 1 9.8881 6.6588 3.9372 41 1 11.7731 5.5031 1.8349 42 1 11.4098 7.2353 2.0234 43 1 15.0851 7.1131 1.8229 44 1 9.2845 5.2022 1.3233 45 1 9.0173 6.9368 1.6220 46 1 6.9378 5.5472 1.9357 47 1 7.4170 6.4250 3.4096 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583814218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:27 Heat of formation + Delta-G solvation = -90.319776 kcal Electronic energy + Delta-G solvation = -23259.478342 eV Core-core repulsion = 19827.782865 eV Total energy + Delta-G solvation = -3431.695477 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.08096 -38.49905 -37.38985 -34.73331 -34.03775 -33.31163 -32.09213 -30.80640 -28.47617 -27.36476 -25.74590 -24.54805 -22.96618 -22.20075 -21.50455 -20.28715 -19.70714 -18.62124 -17.18738 -16.90714 -16.65337 -16.27211 -15.83138 -15.51630 -15.26252 -14.56429 -14.43102 -13.91673 -13.80108 -13.53357 -13.25873 -13.02881 -12.84353 -12.79100 -12.44698 -12.25701 -12.00674 -11.80068 -11.48482 -11.25702 -11.19161 -11.13941 -11.02381 -10.76660 -10.69107 -10.43865 -10.20709 -10.19299 -9.70630 -9.68548 -9.61917 -9.27624 -8.99514 -8.37665 -8.34194 -6.01084 -4.03062 1.74024 2.72922 3.05404 3.32249 3.37085 3.39242 3.51159 4.43982 4.45069 4.57511 4.68896 4.73314 4.90500 4.95386 4.98444 5.07281 5.14130 5.15539 5.20746 5.33700 5.34217 5.39682 5.43418 5.45217 5.58321 5.67991 5.81516 5.91131 5.96705 6.05612 6.08734 6.14421 6.23244 6.32743 6.35946 6.51477 6.64890 6.88989 6.96840 6.99936 7.09726 7.56930 7.64183 7.78928 7.98063 8.29265 8.40883 9.03034 9.60897 11.10079 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.041533 B = 0.002126 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.008729 B =13166.250100 C =13420.371922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.150 4.150 3 C 0.087 3.913 4 O -0.384 6.384 5 C 0.063 3.937 6 C -0.103 4.103 7 C -0.137 4.137 8 C 0.513 3.487 9 O -0.548 6.548 10 N -0.606 5.606 11 C 0.108 3.892 12 C -0.117 4.117 13 C -0.081 4.081 14 C 0.028 3.972 15 C -0.518 4.518 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.131 4.131 24 C 0.106 3.894 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.195 -6.333 -4.232 25.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.168 4.168 3 C 0.011 3.989 4 O -0.303 6.303 5 C -0.014 4.014 6 C -0.141 4.141 7 C -0.177 4.177 8 C 0.301 3.699 9 O -0.426 6.426 10 N -0.340 5.340 11 C -0.014 4.014 12 C -0.155 4.155 13 C -0.100 4.100 14 C -0.009 4.009 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.169 4.169 24 C -0.017 4.017 25 H 0.122 0.878 26 H 0.116 0.884 27 H 0.135 0.865 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.947 -6.994 -3.906 25.251 hybrid contribution 0.850 0.512 0.394 1.068 sum -23.097 -6.482 -3.513 24.245 Atomic orbital electron populations 1.23843 0.95562 1.02283 1.00237 1.22773 0.95660 0.98323 1.00090 1.21535 0.88980 0.95811 0.92557 1.87923 1.44576 1.37404 1.60420 1.22539 0.92815 0.87039 0.99009 1.21216 0.95777 0.97487 0.99601 1.21566 0.96740 0.99784 0.99600 1.20499 0.82539 0.83269 0.83592 1.90683 1.73390 1.27077 1.51487 1.48194 1.30950 1.14526 1.40290 1.21771 0.87063 1.02419 0.90146 1.21944 0.94913 0.97764 1.00922 1.21248 0.96853 0.95614 0.96265 1.19120 0.89341 0.96562 0.95888 1.21203 0.93409 1.47353 0.93615 0.92640 1.25012 0.98657 0.95491 0.95258 1.69943 1.18562 1.48217 1.16784 0.86700 0.80877 0.78546 0.82121 1.20256 1.21364 1.20300 1.22040 0.93914 1.01751 0.99182 1.21855 0.98964 0.85073 0.95759 0.87773 0.88443 0.86511 0.92821 0.92301 0.93237 0.93097 0.90227 0.90345 0.88886 0.88664 0.91945 0.89704 0.89780 0.92398 0.92351 0.96652 0.96622 0.93000 0.91971 0.91033 0.90465 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 14.31 29.01 0.42 -0.68 16 2 C -0.15 -1.12 9.89 -36.03 -0.36 -1.48 16 3 C 0.09 0.68 6.35 36.01 0.23 0.91 16 4 O -0.38 -4.04 10.33 -35.23 -0.36 -4.40 16 5 C 0.06 0.54 5.94 37.16 0.22 0.76 16 6 C -0.10 -1.08 4.87 -26.73 -0.13 -1.21 16 7 C -0.14 -1.34 4.05 -27.88 -0.11 -1.46 16 8 C 0.51 7.34 7.70 -10.99 -0.08 7.26 16 9 O -0.55 -9.87 15.39 5.56 0.09 -9.78 16 10 N -0.61 -8.63 2.97 -172.74 -0.51 -9.14 16 11 C 0.11 1.70 6.42 -3.71 -0.02 1.67 16 12 C -0.12 -2.13 5.21 -26.45 -0.14 -2.27 16 13 C -0.08 -1.53 2.10 -90.42 -0.19 -1.72 16 14 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 15 C -0.52 -14.04 8.39 -34.44 -0.29 -14.33 16 16 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.47 13.28 55.43 0.74 -25.73 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.13 -1.97 5.37 -26.59 -0.14 -2.11 16 24 C 0.11 1.27 6.34 -3.68 -0.02 1.25 16 25 H 0.10 0.50 8.06 -52.49 -0.42 0.08 16 26 H 0.10 0.49 7.90 -52.49 -0.41 0.07 16 27 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 28 H 0.05 0.35 7.86 -51.93 -0.41 -0.05 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 33 H 0.08 0.93 8.10 -51.93 -0.42 0.50 16 34 H 0.09 0.71 7.94 -51.93 -0.41 0.29 16 35 H 0.10 0.80 7.69 -51.93 -0.40 0.40 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 38 H 0.08 1.64 6.93 -51.93 -0.36 1.28 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 46 H 0.08 0.69 5.93 -51.93 -0.31 0.39 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -32.20 378.19 -8.73 -40.93 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -8.51 Total: -2.56 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -0.85 Total: -11.35 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.22 Total: -34.87 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.28 Total: -14.18 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.20 -8.73 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583814218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.390 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds