Wall clock time and date at job start Tue Mar 31 2020 06:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99997 * 2 1 4 4 O 1.42896 * 109.46841 * 135.00062 * 3 2 1 5 5 C 1.42906 * 113.99897 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47339 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47098 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.46931 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 C 1.50701 * 109.47085 * 295.13082 * 14 13 12 16 16 H 1.07998 * 120.00293 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99472 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00682 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99519 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47133 * 60.00060 * 19 17 15 21 21 H 1.48503 * 109.46942 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47295 * 299.99976 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 24 24 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 25 25 H 1.08002 * 120.00216 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.99948 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.99948 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47052 * 15.00019 * 3 2 1 29 29 H 1.08999 * 109.46881 * 255.00175 * 3 2 1 30 30 H 1.09005 * 109.46701 * 59.99526 * 5 4 3 31 31 H 1.09001 * 109.47169 * 300.00235 * 5 4 3 32 32 H 1.08996 * 109.46993 * 60.00277 * 6 5 4 33 33 H 1.09001 * 109.47240 * 300.00263 * 6 5 4 34 34 H 1.09001 * 109.46646 * 60.00027 * 7 6 5 35 35 H 1.09001 * 109.47188 * 300.00170 * 7 6 5 36 36 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 37 37 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 38 38 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 39 39 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 40 40 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 41 41 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 42 42 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 43 43 H 0.97001 * 120.00836 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.50232 * 301.42239 * 23 13 12 45 45 H 1.09007 * 109.52628 * 181.33900 * 23 13 12 46 46 H 1.08994 * 109.58580 * 353.38021 * 24 10 8 47 47 H 1.09006 * 109.57831 * 113.65514 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9085 2.4348 1.0321 6 6 5.0106 2.2541 2.0778 7 6 5.8471 3.5323 2.1633 8 6 6.9330 3.3540 3.1928 9 8 7.0287 2.3075 3.7983 10 7 7.7979 4.3575 3.4408 11 6 8.8614 4.1990 4.4420 12 6 10.2082 4.5310 3.7918 13 6 10.1335 5.9289 3.1658 14 6 11.4862 6.2804 2.5432 15 6 12.5276 6.3807 3.6280 16 1 12.2521 6.2112 4.6584 17 6 13.8320 6.6890 3.3049 18 7 14.1675 6.8959 2.0503 19 14 15.1226 6.8141 4.6495 20 1 15.2264 5.5135 5.3586 21 1 16.4356 7.1552 4.0452 22 1 14.7318 7.8738 5.6137 23 6 9.0529 5.9493 2.0824 24 6 7.6943 5.6313 2.7158 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3855 2.1160 0.2660 29 1 2.4755 1.4867 -0.9927 30 1 3.2689 3.2696 1.3191 31 1 4.3588 2.6395 0.0607 32 1 5.6501 1.4194 1.7911 33 1 4.5599 2.0496 3.0490 34 1 5.2072 4.3668 2.4502 35 1 6.2978 3.7372 1.1921 36 1 8.6815 4.8766 5.2766 37 1 8.8734 3.1705 4.8026 38 1 10.9926 4.5089 4.5483 39 1 10.4288 3.7970 3.0167 40 1 9.8881 6.6588 3.9372 41 1 11.7731 5.5031 1.8349 42 1 11.4098 7.2353 2.0234 43 1 15.0851 7.1131 1.8229 44 1 9.2845 5.2022 1.3233 45 1 9.0173 6.9368 1.6220 46 1 6.9378 5.5472 1.9357 47 1 7.4170 6.4250 3.4096 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583814218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:26 Heat of formation + Delta-G solvation = -109.096423 kcal Electronic energy + Delta-G solvation = -23260.292558 eV Core-core repulsion = 19827.782865 eV Total energy + Delta-G solvation = -3432.509694 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.22571 -39.20082 -38.67578 -35.69737 -35.38054 -34.17879 -33.80629 -32.01479 -30.02074 -28.33058 -26.57135 -26.04499 -24.13815 -23.56306 -22.63233 -21.15113 -20.74728 -19.81210 -18.44761 -18.11666 -17.64078 -17.37707 -16.76748 -16.53849 -16.48615 -16.01064 -15.29440 -15.22205 -14.96680 -14.58424 -14.49406 -14.38717 -14.01630 -13.89698 -13.49976 -13.43138 -13.09194 -12.96247 -12.83243 -12.69606 -12.46658 -12.32864 -12.16061 -12.05565 -11.91493 -11.82675 -11.76280 -11.31433 -11.03545 -11.00604 -10.78358 -10.66631 -10.51071 -10.22366 -9.58210 -8.16959 -6.25907 1.24591 1.40299 1.42189 1.49685 1.64997 2.03769 2.42008 2.85132 3.16551 3.56347 3.92479 3.98309 4.00682 4.06712 4.12172 4.19647 4.21035 4.29118 4.36744 4.43681 4.46391 4.53992 4.55520 4.56638 4.64069 4.70345 4.74783 4.85685 4.90769 4.99135 5.01927 5.12974 5.14057 5.26594 5.31946 5.35880 5.39096 5.56300 5.63213 5.66708 5.73255 5.81802 5.90788 6.30002 6.30414 6.49566 6.90596 7.19768 7.42512 8.94332 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.041533 B = 0.002126 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.008729 B =13166.250100 C =13420.371922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.177 4.177 3 C 0.084 3.916 4 O -0.415 6.415 5 C 0.064 3.936 6 C -0.099 4.099 7 C -0.127 4.127 8 C 0.506 3.494 9 O -0.594 6.594 10 N -0.609 5.609 11 C 0.116 3.884 12 C -0.109 4.109 13 C -0.074 4.074 14 C 0.032 3.968 15 C -0.531 4.531 16 H 0.061 0.939 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.957 3.043 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.266 1.266 23 C -0.126 4.126 24 C 0.111 3.889 25 H 0.114 0.886 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.038 0.962 40 H 0.062 0.938 41 H -0.017 1.017 42 H -0.006 1.006 43 H 0.261 0.739 44 H 0.051 0.949 45 H 0.083 0.917 46 H 0.120 0.880 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.526 -5.101 -4.124 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.195 4.195 3 C 0.009 3.991 4 O -0.335 6.335 5 C -0.012 4.012 6 C -0.137 4.137 7 C -0.166 4.166 8 C 0.296 3.704 9 O -0.475 6.475 10 N -0.342 5.342 11 C -0.006 4.006 12 C -0.148 4.148 13 C -0.093 4.093 14 C -0.005 4.005 15 C -0.569 4.569 16 H 0.079 0.921 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.782 3.218 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.191 1.191 23 C -0.165 4.165 24 C -0.011 4.011 25 H 0.132 0.868 26 H 0.128 0.872 27 H 0.126 0.874 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.147 0.853 35 H 0.137 0.863 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.002 0.998 42 H 0.012 0.988 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.138 0.862 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -26.298 -5.743 -3.804 27.185 hybrid contribution 1.570 0.094 0.334 1.608 sum -24.728 -5.649 -3.470 25.601 Atomic orbital electron populations 1.24056 0.95107 1.03415 0.98081 1.22839 0.96339 0.98158 1.02145 1.21681 0.88648 0.96312 0.92494 1.87885 1.45560 1.38615 1.61426 1.22568 0.92476 0.87113 0.99018 1.21133 0.96107 0.97171 0.99328 1.21602 0.95526 1.00439 0.99041 1.21355 0.83045 0.82275 0.83697 1.90668 1.74660 1.28882 1.53320 1.48310 1.30317 1.15549 1.39994 1.21527 0.86222 1.02023 0.90863 1.21791 0.96199 0.96937 0.99852 1.21106 0.95093 0.95757 0.97348 1.19024 0.92338 0.94301 0.94814 1.21662 0.94279 1.46476 0.94498 0.92060 1.25910 1.01116 0.95299 0.97510 1.70078 1.19031 1.49480 1.18878 0.85624 0.77957 0.78910 0.79298 1.19603 1.21188 1.19085 1.21965 0.94492 1.02280 0.97723 1.22021 0.97720 0.84321 0.96993 0.86762 0.87184 0.87433 0.91422 0.91397 0.91004 0.91503 0.92903 0.92279 0.85284 0.86265 0.90381 0.90984 0.91743 0.94339 0.91908 0.99824 0.98803 0.93025 0.92972 0.89875 0.86208 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 14.31 67.78 0.97 -0.78 16 2 C -0.18 -2.48 9.89 25.64 0.25 -2.23 16 3 C 0.08 1.18 6.35 71.24 0.45 1.63 16 4 O -0.41 -8.26 10.33 -148.98 -1.54 -9.80 16 5 C 0.06 0.95 5.94 71.98 0.43 1.38 16 6 C -0.10 -1.95 4.87 30.60 0.15 -1.80 16 7 C -0.13 -2.06 4.05 29.85 0.12 -1.94 16 8 C 0.51 13.60 7.70 87.66 0.67 14.28 16 9 O -0.59 -21.47 15.39 -3.03 -0.05 -21.52 16 10 N -0.61 -16.00 2.97 -818.81 -2.43 -18.43 16 11 C 0.12 3.58 6.42 86.36 0.55 4.13 16 12 C -0.11 -4.04 5.21 30.78 0.16 -3.88 16 13 C -0.07 -2.80 2.10 -10.66 -0.02 -2.82 16 14 C 0.03 1.63 4.45 29.85 0.13 1.76 16 15 C -0.53 -29.32 8.39 25.60 0.21 -29.11 16 16 H 0.06 3.23 7.06 -2.91 -0.02 3.21 16 17 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 18 N -0.93 -56.50 13.28 21.45 0.28 -56.21 16 19 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 C -0.13 -3.57 5.37 30.69 0.16 -3.41 16 24 C 0.11 2.22 6.34 86.38 0.55 2.77 16 25 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 26 H 0.11 0.84 7.90 -2.91 -0.02 0.81 16 27 H 0.11 1.63 8.06 -2.91 -0.02 1.61 16 28 H 0.07 0.72 7.86 -2.39 -0.02 0.70 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 33 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 34 H 0.13 1.25 7.94 -2.39 -0.02 1.23 16 35 H 0.12 1.44 7.69 -2.39 -0.02 1.43 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.07 2.41 7.00 -2.39 -0.02 2.40 16 38 H 0.06 2.58 6.93 -2.39 -0.02 2.57 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 42 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 43 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 46 H 0.12 1.46 5.93 -2.39 -0.01 1.44 16 47 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -73.43 378.19 4.46 -68.98 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.90 Total: 10.42 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 5.26 Total: -19.59 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -2.15 Total: -74.65 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.59 Total: -31.31 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -73.43 4.46 -68.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583814218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.121 kcal (2) G-P(sol) polarization free energy of solvation -73.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds