Wall clock time and date at job start Tue Mar 31 2020 07:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.51506 * 2 1 4 4 C 1.53300 * 109.50930 * 120.10180 * 2 1 3 5 5 N 1.47156 * 108.37873 * 172.27631 * 4 2 1 6 6 C 1.34776 * 120.97855 * 129.44585 * 5 4 2 7 7 O 1.21278 * 119.99650 * 179.97438 * 6 5 4 8 8 C 1.50700 * 120.00383 * 359.97438 * 6 5 4 9 9 C 1.52995 * 109.47370 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47098 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.46806 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.46591 * 179.97438 * 11 10 9 13 13 H 1.07989 * 120.00480 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99591 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99789 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47056 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46875 * 119.99832 * 16 14 12 19 19 H 1.48498 * 109.46936 * 240.00035 * 16 14 12 20 20 C 1.47151 * 118.03773 * 309.45894 * 5 4 2 21 21 C 1.53292 * 108.38215 * 50.54121 * 20 5 4 22 22 H 1.09000 * 109.51207 * 67.61969 * 21 20 5 23 23 C 1.52998 * 109.51162 * 187.72336 * 21 20 5 24 24 C 1.53008 * 117.49777 * 248.74837 * 23 21 20 25 25 C 1.53001 * 117.49763 * 180.08968 * 23 21 20 26 26 O 1.42959 * 109.22441 * 307.69471 * 21 20 5 27 27 H 1.08997 * 109.47178 * 300.00563 * 1 2 3 28 28 H 1.09001 * 109.46913 * 59.99598 * 1 2 3 29 29 H 1.08992 * 109.47270 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.67727 * 291.99267 * 4 2 1 31 31 H 1.08994 * 109.68217 * 52.51804 * 4 2 1 32 32 H 1.09002 * 109.46594 * 299.99939 * 8 6 5 33 33 H 1.09000 * 109.47360 * 59.99675 * 8 6 5 34 34 H 1.09008 * 109.46866 * 299.99804 * 9 8 6 35 35 H 1.09000 * 109.47508 * 59.99320 * 9 8 6 36 36 H 1.09002 * 109.46609 * 299.99337 * 10 9 8 37 37 H 1.08994 * 109.47238 * 59.99498 * 10 9 8 38 38 H 1.09002 * 109.47147 * 299.99194 * 11 10 9 39 39 H 1.08994 * 109.47480 * 59.99832 * 11 10 9 40 40 H 0.96992 * 120.00210 * 179.97438 * 15 14 12 41 41 H 1.09001 * 109.68225 * 170.26417 * 20 5 4 42 42 H 1.09000 * 109.68314 * 290.78206 * 20 5 4 43 43 H 1.08998 * 115.54974 * 34.41608 * 23 21 20 44 44 H 1.08991 * 117.49758 * 359.97438 * 24 23 21 45 45 H 1.09001 * 117.49714 * 145.02110 * 24 23 21 46 46 H 1.09003 * 117.49727 * 214.97725 * 25 23 21 47 47 H 1.08997 * 117.50210 * 359.96947 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 1.2501 5 7 3.5013 -0.8746 1.1345 6 6 4.3188 -0.5011 2.1389 7 8 5.5189 -0.6331 2.0248 8 6 3.7415 0.0805 3.4036 9 6 4.8755 0.4181 4.3736 10 6 4.2894 1.0079 5.6579 11 6 5.4234 1.3449 6.6282 12 6 4.8461 1.9265 7.8929 13 1 3.7775 2.0444 7.9944 14 6 5.6824 2.3081 8.9206 15 7 6.9838 2.1641 8.7973 16 14 4.9668 3.0284 10.4886 17 1 3.4870 3.0840 10.3774 18 1 5.3452 2.1746 11.6431 19 1 5.4994 4.3997 10.6914 20 6 4.0417 -1.4441 -0.1101 21 6 3.4323 -0.6844 -1.2938 22 1 3.8033 0.3405 -1.2985 23 6 3.8243 -1.3759 -2.6012 24 6 4.7898 -0.6363 -3.5296 25 6 3.3114 -0.7630 -3.9059 26 8 2.0085 -0.6762 -1.1652 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8023 -0.1393 2.1377 31 1 1.5759 -1.7074 1.3214 32 1 3.1854 0.9872 3.1657 33 1 3.0723 -0.6457 3.8651 34 1 5.4320 -0.4885 4.6116 35 1 5.5445 1.1443 3.9120 36 1 3.7327 1.9144 5.4202 37 1 3.6207 0.2813 6.1193 38 1 5.9798 0.4382 6.8658 39 1 6.0924 2.0714 6.1670 40 1 7.5722 2.4329 9.5201 41 1 5.1262 -1.3352 -0.1231 42 1 3.7780 -2.4997 -0.1757 43 1 3.9051 -2.4618 -2.5528 44 1 5.1453 0.3429 -3.2092 45 1 5.5054 -1.2358 -4.0923 46 1 3.0551 -1.4457 -4.7160 47 1 2.6943 0.1325 -3.8329 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588165769.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:58 Heat of formation + Delta-G solvation = -78.699160 kcal Electronic energy + Delta-G solvation = -23787.958838 eV Core-core repulsion = 20356.767269 eV Total energy + Delta-G solvation = -3431.191569 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.67942 -38.90963 -37.24753 -35.02332 -34.82545 -33.07450 -32.55270 -30.19918 -28.91842 -26.68580 -25.86034 -24.09346 -22.74817 -22.13428 -21.55550 -20.95329 -20.03179 -19.09529 -17.21459 -17.08270 -16.41035 -16.12092 -16.08421 -15.66413 -15.41637 -14.67553 -14.45360 -14.43298 -13.99979 -13.45544 -13.32052 -12.96899 -12.72040 -12.64141 -12.35522 -12.17257 -11.91779 -11.88326 -11.62594 -11.57964 -11.46585 -11.13524 -11.00134 -10.77065 -10.57349 -10.55146 -10.48359 -10.41372 -10.33556 -9.77978 -9.61813 -9.22728 -8.97299 -8.73793 -8.30808 -5.95298 -3.97774 2.62237 2.68583 2.99971 3.33001 3.40152 3.44004 3.67390 4.12983 4.38134 4.44121 4.48071 4.52247 4.60496 4.65749 4.71997 4.78913 4.94784 4.99992 5.13182 5.21613 5.26890 5.30048 5.32353 5.32483 5.40100 5.44804 5.51994 5.56936 5.60168 5.74956 5.76489 5.81963 5.83255 6.12165 6.17159 6.30483 6.53869 6.83027 6.84066 7.00170 7.17502 7.23628 7.74408 7.90008 8.06105 8.14343 8.47868 9.10175 9.65867 11.16088 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.002443 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.689388 B =11456.794535 C =12145.847103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.063 0.937 4 C 0.077 3.923 5 N -0.625 5.625 6 C 0.516 3.484 7 O -0.532 6.532 8 C -0.137 4.137 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.019 3.981 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.054 3.946 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.086 3.914 21 C 0.111 3.889 22 H 0.063 0.937 23 C -0.150 4.150 24 C -0.172 4.172 25 C -0.163 4.163 26 O -0.371 6.371 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.721 -7.020 -25.262 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 H 0.081 0.919 4 C -0.046 4.046 5 N -0.361 5.361 6 C 0.306 3.694 7 O -0.407 6.407 8 C -0.177 4.177 9 C -0.141 4.141 10 C -0.147 4.147 11 C -0.018 4.018 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.036 4.036 21 C 0.053 3.947 22 H 0.081 0.919 23 C -0.169 4.169 24 C -0.209 4.209 25 C -0.200 4.200 26 O -0.290 6.290 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.120 0.880 42 H 0.091 0.909 43 H 0.130 0.870 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.114 0.886 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.009 -7.147 -25.331 28.930 hybrid contribution -0.212 0.449 1.104 1.211 sum -12.221 -6.698 -24.226 27.949 Atomic orbital electron populations 1.21732 0.91981 1.03331 1.03028 1.22491 0.95635 0.95417 0.85001 0.91881 1.22513 0.80314 1.02124 0.99642 1.48275 1.06799 1.64390 1.16634 1.21160 0.86651 0.76904 0.84708 1.90698 1.14975 1.54212 1.80814 1.21827 1.01233 1.01605 0.93045 1.21469 0.95895 1.01764 0.95017 1.21646 1.00021 0.98808 0.94248 1.19104 0.93015 0.96737 0.92929 1.21316 0.93105 1.40957 1.00373 0.92702 1.25053 0.94861 0.96055 0.98676 1.69983 1.02469 1.48206 1.32798 0.86554 0.79229 0.78799 0.83518 1.19780 1.21047 1.21055 1.22207 1.01022 0.97482 0.82925 1.21933 0.81479 0.98336 0.92943 0.91935 1.22091 1.05476 0.99356 0.89991 1.23057 0.93182 1.02058 1.02592 1.22844 0.96492 1.03233 0.97421 1.87969 1.20521 1.77404 1.43101 0.90496 0.91422 0.91471 0.88254 0.90416 0.89193 0.89074 0.91758 0.91797 0.93491 0.93461 0.96573 0.96590 0.93096 0.87978 0.90888 0.86985 0.88545 0.88165 0.88591 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.57 37.16 0.36 -0.50 16 2 C 0.07 0.59 3.40 -26.58 -0.09 0.50 16 3 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.08 0.66 5.83 -3.53 -0.02 0.64 16 5 N -0.63 -7.25 3.02 -172.28 -0.52 -7.77 16 6 C 0.52 7.58 7.71 -10.99 -0.08 7.49 16 7 O -0.53 -9.91 15.45 5.56 0.09 -9.82 16 8 C -0.14 -1.87 4.07 -27.89 -0.11 -1.98 16 9 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 12 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.09 0.93 5.91 -3.54 -0.02 0.90 16 21 C 0.11 1.05 2.97 -26.58 -0.08 0.97 16 22 H 0.06 0.63 7.90 -51.93 -0.41 0.22 16 23 C -0.15 -1.19 5.39 -90.62 -0.49 -1.68 16 24 C -0.17 -1.18 10.18 -26.69 -0.27 -1.46 16 25 C -0.16 -1.14 10.17 -26.69 -0.27 -1.41 16 26 O -0.37 -3.59 9.95 -35.23 -0.35 -3.94 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.73 6.05 -51.93 -0.31 0.41 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.05 7.66 -51.93 -0.40 0.65 16 33 H 0.09 1.08 8.01 -51.93 -0.42 0.66 16 34 H 0.06 1.24 8.10 -51.92 -0.42 0.82 16 35 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.10 1.23 7.08 -51.93 -0.37 0.87 16 42 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 43 H 0.11 0.82 8.10 -51.93 -0.42 0.40 16 44 H 0.10 0.68 8.05 -51.93 -0.42 0.26 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 377.91 15.07 5.69 5.69 Total: -1.00 -33.88 377.91 -9.89 -43.77 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -8.62 Total: -3.63 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -1.89 Total: -14.35 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.22 Total: -34.65 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.26 Total: -13.76 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.88 -9.89 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165769.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.925 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds