Wall clock time and date at job start Tue Mar 31 2020 07:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.51506 * 2 1 4 4 C 1.53300 * 109.50930 * 120.10180 * 2 1 3 5 5 N 1.47156 * 108.37873 * 172.27631 * 4 2 1 6 6 C 1.34776 * 120.97855 * 129.44585 * 5 4 2 7 7 O 1.21278 * 119.99650 * 179.97438 * 6 5 4 8 8 C 1.50700 * 120.00383 * 359.97438 * 6 5 4 9 9 C 1.52995 * 109.47370 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47098 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.46806 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.46591 * 179.97438 * 11 10 9 13 13 H 1.07989 * 120.00480 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99591 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99789 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47056 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46875 * 119.99832 * 16 14 12 19 19 H 1.48498 * 109.46936 * 240.00035 * 16 14 12 20 20 C 1.47151 * 118.03773 * 309.45894 * 5 4 2 21 21 C 1.53292 * 108.38215 * 50.54121 * 20 5 4 22 22 H 1.09000 * 109.51207 * 67.61969 * 21 20 5 23 23 C 1.52998 * 109.51162 * 187.72336 * 21 20 5 24 24 C 1.53008 * 117.49777 * 248.74837 * 23 21 20 25 25 C 1.53001 * 117.49763 * 180.08968 * 23 21 20 26 26 O 1.42959 * 109.22441 * 307.69471 * 21 20 5 27 27 H 1.08997 * 109.47178 * 300.00563 * 1 2 3 28 28 H 1.09001 * 109.46913 * 59.99598 * 1 2 3 29 29 H 1.08992 * 109.47270 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.67727 * 291.99267 * 4 2 1 31 31 H 1.08994 * 109.68217 * 52.51804 * 4 2 1 32 32 H 1.09002 * 109.46594 * 299.99939 * 8 6 5 33 33 H 1.09000 * 109.47360 * 59.99675 * 8 6 5 34 34 H 1.09008 * 109.46866 * 299.99804 * 9 8 6 35 35 H 1.09000 * 109.47508 * 59.99320 * 9 8 6 36 36 H 1.09002 * 109.46609 * 299.99337 * 10 9 8 37 37 H 1.08994 * 109.47238 * 59.99498 * 10 9 8 38 38 H 1.09002 * 109.47147 * 299.99194 * 11 10 9 39 39 H 1.08994 * 109.47480 * 59.99832 * 11 10 9 40 40 H 0.96992 * 120.00210 * 179.97438 * 15 14 12 41 41 H 1.09001 * 109.68225 * 170.26417 * 20 5 4 42 42 H 1.09000 * 109.68314 * 290.78206 * 20 5 4 43 43 H 1.08998 * 115.54974 * 34.41608 * 23 21 20 44 44 H 1.08991 * 117.49758 * 359.97438 * 24 23 21 45 45 H 1.09001 * 117.49714 * 145.02110 * 24 23 21 46 46 H 1.09003 * 117.49727 * 214.97725 * 25 23 21 47 47 H 1.08997 * 117.50210 * 359.96947 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 1.2501 5 7 3.5013 -0.8746 1.1345 6 6 4.3188 -0.5011 2.1389 7 8 5.5189 -0.6331 2.0248 8 6 3.7415 0.0805 3.4036 9 6 4.8755 0.4181 4.3736 10 6 4.2894 1.0079 5.6579 11 6 5.4234 1.3449 6.6282 12 6 4.8461 1.9265 7.8929 13 1 3.7775 2.0444 7.9944 14 6 5.6824 2.3081 8.9206 15 7 6.9838 2.1641 8.7973 16 14 4.9668 3.0284 10.4886 17 1 3.4870 3.0840 10.3774 18 1 5.3452 2.1746 11.6431 19 1 5.4994 4.3997 10.6914 20 6 4.0417 -1.4441 -0.1101 21 6 3.4323 -0.6844 -1.2938 22 1 3.8033 0.3405 -1.2985 23 6 3.8243 -1.3759 -2.6012 24 6 4.7898 -0.6363 -3.5296 25 6 3.3114 -0.7630 -3.9059 26 8 2.0085 -0.6762 -1.1652 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8023 -0.1393 2.1377 31 1 1.5759 -1.7074 1.3214 32 1 3.1854 0.9872 3.1657 33 1 3.0723 -0.6457 3.8651 34 1 5.4320 -0.4885 4.6116 35 1 5.5445 1.1443 3.9120 36 1 3.7327 1.9144 5.4202 37 1 3.6207 0.2813 6.1193 38 1 5.9798 0.4382 6.8658 39 1 6.0924 2.0714 6.1670 40 1 7.5722 2.4329 9.5201 41 1 5.1262 -1.3352 -0.1231 42 1 3.7780 -2.4997 -0.1757 43 1 3.9051 -2.4618 -2.5528 44 1 5.1453 0.3429 -3.2092 45 1 5.5054 -1.2358 -4.0923 46 1 3.0551 -1.4457 -4.7160 47 1 2.6943 0.1325 -3.8329 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588165769.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:58 Heat of formation + Delta-G solvation = -98.523175 kcal Electronic energy + Delta-G solvation = -23788.818472 eV Core-core repulsion = 20356.767269 eV Total energy + Delta-G solvation = -3432.051203 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58724 -39.86925 -37.88040 -36.68892 -35.82190 -34.66190 -33.63329 -31.70957 -29.98020 -27.61401 -27.29765 -25.28411 -23.70852 -23.21010 -22.35096 -21.74881 -21.61980 -20.10290 -18.46235 -18.16630 -17.79955 -17.22961 -17.08104 -16.63625 -16.47300 -16.09774 -15.77741 -15.34320 -14.96174 -14.58599 -14.54434 -14.04532 -13.76908 -13.70075 -13.53344 -13.33818 -13.12813 -12.94383 -12.85151 -12.53316 -12.43111 -12.30356 -12.18518 -12.15193 -12.10201 -11.83830 -11.40773 -11.37551 -11.33998 -11.27037 -11.12026 -11.06470 -10.74308 -10.55966 -9.64236 -8.18878 -6.30961 1.40568 1.41527 1.51092 1.54966 1.76882 2.35834 2.41868 3.07536 3.13969 3.40668 3.53769 3.75524 3.79342 3.94165 3.96164 4.03236 4.06492 4.10615 4.14574 4.28357 4.36342 4.41552 4.49955 4.63404 4.65202 4.68839 4.76978 4.78249 4.81139 4.85682 4.93389 5.00481 5.04032 5.16089 5.18590 5.23883 5.27993 5.33863 5.34097 5.37514 5.56379 5.77478 5.87853 6.15132 6.22014 6.25240 6.87832 7.05125 7.38706 8.93656 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.002443 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.689388 B =11456.794535 C =12145.847103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.069 3.931 3 H 0.059 0.941 4 C 0.072 3.928 5 N -0.619 5.619 6 C 0.512 3.488 7 O -0.584 6.584 8 C -0.126 4.126 9 C -0.095 4.095 10 C -0.094 4.094 11 C 0.018 3.982 12 C -0.539 4.539 13 H 0.067 0.933 14 C -0.009 4.009 15 N -0.939 5.939 16 Si 0.970 3.030 17 H -0.256 1.256 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.085 3.915 21 C 0.119 3.881 22 H 0.051 0.949 23 C -0.162 4.162 24 C -0.171 4.171 25 C -0.157 4.157 26 O -0.378 6.378 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.062 0.938 38 H -0.016 1.016 39 H -0.016 1.016 40 H 0.263 0.737 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.112 0.888 46 H 0.109 0.891 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.879 -6.933 -25.427 30.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.011 3.989 3 H 0.077 0.923 4 C -0.050 4.050 5 N -0.353 5.353 6 C 0.303 3.697 7 O -0.464 6.464 8 C -0.166 4.166 9 C -0.134 4.134 10 C -0.132 4.132 11 C -0.019 4.019 12 C -0.577 4.577 13 H 0.085 0.915 14 C -0.206 4.206 15 N -0.579 5.579 16 Si 0.794 3.206 17 H -0.180 1.180 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.038 4.038 21 C 0.061 3.939 22 H 0.069 0.931 23 C -0.180 4.180 24 C -0.208 4.208 25 C -0.194 4.194 26 O -0.298 6.298 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.137 0.863 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.136 0.864 44 H 0.109 0.891 45 H 0.131 0.869 46 H 0.127 0.873 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.228 -7.067 -25.527 30.553 hybrid contribution 0.787 0.405 1.106 1.416 sum -14.441 -6.662 -24.422 29.143 Atomic orbital electron populations 1.21735 0.90039 1.03800 1.03937 1.22656 0.97059 0.94933 0.84256 0.92313 1.22818 0.78053 1.03392 1.00741 1.48323 1.08063 1.62923 1.15985 1.21328 0.86171 0.76683 0.85553 1.90684 1.17199 1.56638 1.81861 1.21715 0.99654 1.03674 0.91521 1.21254 0.97080 0.99996 0.95027 1.21438 0.97910 1.00029 0.93790 1.19068 0.94390 0.94332 0.94153 1.21779 0.93828 1.40921 1.01174 0.91457 1.26113 0.95172 0.96419 1.02854 1.70138 1.04207 1.49338 1.34236 0.85324 0.79162 0.77786 0.78305 1.17979 1.20530 1.20518 1.22263 1.00078 0.98248 0.83205 1.21818 0.81477 0.97572 0.93063 0.93103 1.22126 1.06548 0.99688 0.89678 1.23124 0.93535 1.01895 1.02225 1.22892 0.96330 1.03117 0.97081 1.87975 1.20314 1.77590 1.43921 0.88669 0.91469 0.91193 0.86336 0.89078 0.86279 0.86213 0.93908 0.93915 0.91907 0.91922 0.99764 0.99756 0.92874 0.89953 0.89932 0.86357 0.89052 0.86923 0.87251 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.57 71.98 0.69 -0.56 16 2 C 0.07 0.97 3.40 30.70 0.10 1.07 16 3 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 4 C 0.07 1.03 5.83 86.35 0.50 1.53 16 5 N -0.62 -13.63 3.02 -817.36 -2.47 -16.09 16 6 C 0.51 14.79 7.71 87.66 0.68 15.47 16 7 O -0.58 -22.58 15.45 -3.02 -0.05 -22.62 16 8 C -0.13 -3.18 4.07 29.85 0.12 -3.06 16 9 C -0.10 -3.47 4.50 30.59 0.14 -3.34 16 10 C -0.09 -3.82 5.15 30.60 0.16 -3.66 16 11 C 0.02 0.97 4.97 29.85 0.15 1.12 16 12 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 13 H 0.07 3.64 7.74 -2.92 -0.02 3.62 16 14 C -0.01 -0.51 5.46 84.66 0.46 -0.04 16 15 N -0.94 -59.26 13.29 21.45 0.28 -58.98 16 16 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 17 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 C 0.08 1.80 5.91 86.35 0.51 2.31 16 21 C 0.12 2.17 2.97 30.69 0.09 2.27 16 22 H 0.05 1.04 7.90 -2.39 -0.02 1.02 16 23 C -0.16 -2.42 5.39 -10.79 -0.06 -2.48 16 24 C -0.17 -2.23 10.18 30.62 0.31 -1.92 16 25 C -0.16 -2.01 10.17 30.62 0.31 -1.70 16 26 O -0.38 -6.76 9.95 -148.98 -1.48 -8.24 16 27 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.12 1.25 6.05 -2.39 -0.01 1.24 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.12 2.35 7.66 -2.39 -0.02 2.33 16 33 H 0.12 2.38 8.01 -2.39 -0.02 2.37 16 34 H 0.04 1.71 8.10 -2.38 -0.02 1.70 16 35 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.08 2.09 7.08 -2.39 -0.02 2.07 16 42 H 0.08 1.58 8.13 -2.39 -0.02 1.56 16 43 H 0.12 1.61 8.10 -2.39 -0.02 1.59 16 44 H 0.09 1.28 8.05 -2.39 -0.02 1.26 16 45 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -75.81 377.91 3.62 -72.18 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.91 Total: 10.91 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 4.40 Total: -23.96 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -2.18 Total: -75.07 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -1.53 Total: -30.86 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -75.81 3.62 -72.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165769.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.338 kcal (2) G-P(sol) polarization free energy of solvation -75.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds