Wall clock time and date at job start Tue Mar 31 2020 07:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.51184 * 2 1 4 4 C 1.52876 * 109.58463 * 239.98181 * 2 1 3 5 5 N 1.47153 * 108.61071 * 187.92552 * 4 2 1 6 6 C 1.34773 * 120.98246 * 230.50210 * 5 4 2 7 7 O 1.21283 * 120.00360 * 179.44019 * 6 5 4 8 8 C 1.50706 * 120.00081 * 359.71295 * 6 5 4 9 9 C 1.52998 * 109.47348 * 179.72561 * 8 6 5 10 10 C 1.52996 * 109.46929 * 179.97438 * 9 8 6 11 11 C 1.53008 * 109.46808 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46847 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99683 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99722 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00217 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00073 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99682 * 16 14 12 18 18 H 1.48498 * 109.47278 * 210.00111 * 16 14 12 19 19 H 1.48507 * 109.46754 * 329.99942 * 16 14 12 20 20 C 1.47152 * 118.03531 * 50.22234 * 5 4 2 21 21 C 1.53298 * 108.38669 * 309.71848 * 20 5 4 22 22 H 1.09005 * 109.51375 * 292.32952 * 21 20 5 23 23 C 1.52993 * 109.51191 * 172.22796 * 21 20 5 24 24 C 1.53001 * 117.49946 * 248.74537 * 23 21 20 25 25 C 1.53002 * 117.49697 * 180.08844 * 23 21 20 26 26 O 1.42962 * 109.51279 * 120.09592 * 2 1 3 27 27 H 1.09002 * 109.46786 * 299.90283 * 1 2 3 28 28 H 1.08997 * 109.46689 * 59.90229 * 1 2 3 29 29 H 1.08997 * 109.46919 * 179.90114 * 1 2 3 30 30 H 1.08997 * 109.61956 * 68.10388 * 4 2 1 31 31 H 1.09006 * 109.52204 * 307.68222 * 4 2 1 32 32 H 1.09001 * 109.46564 * 299.73030 * 8 6 5 33 33 H 1.08998 * 109.47012 * 59.72084 * 8 6 5 34 34 H 1.09000 * 109.46986 * 300.00089 * 9 8 6 35 35 H 1.09002 * 109.46857 * 60.00224 * 9 8 6 36 36 H 1.09000 * 109.47441 * 299.99910 * 10 9 8 37 37 H 1.08994 * 109.47235 * 60.00181 * 10 9 8 38 38 H 1.08996 * 109.46961 * 299.99496 * 11 10 9 39 39 H 1.08994 * 109.47402 * 59.99882 * 11 10 9 40 40 H 0.96999 * 120.00128 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.68223 * 69.44706 * 20 5 4 42 42 H 1.09009 * 109.68174 * 189.95944 * 20 5 4 43 43 H 1.09001 * 115.55141 * 34.41832 * 23 21 20 44 44 H 1.09001 * 117.49605 * 0.02562 * 24 23 21 45 45 H 1.09001 * 117.50187 * 145.02166 * 24 23 21 46 46 H 1.09001 * 117.49971 * 214.97380 * 25 23 21 47 47 H 1.08996 * 117.50022 * 0.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0424 -0.7206 -1.2471 5 7 3.5012 -0.8768 -1.1331 6 6 4.3194 -0.5044 -2.1373 7 8 5.5198 -0.6317 -2.0203 8 6 3.7430 0.0759 -3.4031 9 6 4.8781 0.4181 -4.3702 10 6 4.2928 1.0067 -5.6555 11 6 5.4279 1.3483 -6.6230 12 6 4.8515 1.9287 -7.8887 13 1 3.7825 2.0420 -7.9928 14 6 5.6888 2.3148 -8.9137 15 7 6.9906 2.1773 -8.7867 16 14 4.9745 3.0348 -10.4824 17 1 4.8681 4.5097 -10.3464 18 1 5.8617 2.7059 -11.6269 19 1 3.6256 2.4611 -10.7208 20 6 4.0407 -1.4458 0.1121 21 6 3.4313 -0.6848 1.2952 22 1 3.8037 0.3396 1.2999 23 6 3.8213 -1.3764 2.6030 24 6 2.7119 -2.0778 3.3894 25 6 3.3047 -0.7648 3.9068 26 8 2.0075 -0.6757 1.1658 27 1 -0.3633 0.5123 0.8909 28 1 -0.3632 0.5153 -0.8891 29 1 -0.3633 -1.0276 -0.0018 30 1 1.8044 -0.1324 -2.1334 31 1 1.5728 -1.7016 -1.3198 32 1 3.0778 -0.6526 -3.8666 33 1 3.1827 0.9802 -3.1659 34 1 5.5433 1.1466 -3.9066 35 1 5.4384 -0.4863 -4.6074 36 1 3.6279 0.2779 -6.1190 37 1 3.7323 1.9109 -5.4187 38 1 6.0931 2.0770 -6.1597 39 1 5.9882 0.4439 -6.8597 40 1 7.5797 2.4486 -9.5079 41 1 3.7757 -2.5009 0.1786 42 1 5.1253 -1.3382 0.1252 43 1 4.8125 -1.8297 2.6177 44 1 1.7044 -2.0469 2.9747 45 1 2.9734 -2.9923 3.9217 46 1 3.9558 -0.8161 4.7795 47 1 2.6866 0.1299 3.8329 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588165771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:04 Heat of formation + Delta-G solvation = -78.254900 kcal Electronic energy + Delta-G solvation = -23844.755446 eV Core-core repulsion = 20413.583141 eV Total energy + Delta-G solvation = -3431.172305 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.71633 -38.96518 -37.10166 -35.02586 -34.80648 -33.04711 -32.54380 -30.23203 -28.98630 -26.71355 -25.87472 -24.07034 -22.73378 -22.19120 -21.66577 -20.66497 -20.03195 -19.11610 -17.22318 -16.96089 -16.25351 -16.21555 -16.05050 -15.80671 -15.43473 -14.72100 -14.49846 -14.43697 -13.99016 -13.39285 -13.36124 -12.91904 -12.71079 -12.63952 -12.34761 -12.17433 -11.94894 -11.77814 -11.65248 -11.59556 -11.50169 -11.13404 -10.98840 -10.70485 -10.60844 -10.54819 -10.50488 -10.40639 -10.18867 -9.78059 -9.61586 -9.22668 -8.98333 -8.73666 -8.30391 -5.95051 -3.97651 2.62146 2.70860 3.13345 3.33947 3.39972 3.43075 3.50382 4.17109 4.38434 4.47117 4.49813 4.54149 4.62540 4.65486 4.72920 4.94446 4.95235 4.98801 5.11616 5.21681 5.26614 5.31464 5.32624 5.37304 5.40259 5.46345 5.52266 5.58553 5.63286 5.75436 5.80257 5.83452 5.94381 6.12141 6.17199 6.30476 6.53839 6.82446 6.83037 7.00147 7.17438 7.23529 7.74176 7.90095 8.06217 8.14236 8.47891 9.10031 9.65954 11.16268 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.032267 B = 0.002404 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.558792 B =11643.836023 C =12264.880182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 H 0.064 0.936 4 C 0.078 3.922 5 N -0.625 5.625 6 C 0.516 3.484 7 O -0.532 6.532 8 C -0.137 4.137 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.087 3.913 21 C 0.111 3.889 22 H 0.066 0.934 23 C -0.156 4.156 24 C -0.162 4.162 25 C -0.172 4.172 26 O -0.372 6.372 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.106 0.894 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.436 -7.533 25.072 29.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 H 0.081 0.919 4 C -0.045 4.045 5 N -0.360 5.360 6 C 0.306 3.694 7 O -0.407 6.407 8 C -0.177 4.177 9 C -0.141 4.141 10 C -0.147 4.147 11 C -0.017 4.017 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.036 4.036 21 C 0.053 3.947 22 H 0.084 0.916 23 C -0.174 4.174 24 C -0.199 4.199 25 C -0.209 4.209 26 O -0.291 6.291 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.136 0.864 44 H 0.124 0.876 45 H 0.109 0.891 46 H 0.112 0.888 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.720 -7.662 25.139 29.197 hybrid contribution -0.166 0.501 -1.084 1.205 sum -12.886 -7.161 24.055 28.213 Atomic orbital electron populations 1.21733 0.91975 1.03308 1.03054 1.22399 0.95610 0.95489 0.84962 0.91850 1.22418 0.80383 1.02112 0.99635 1.48262 1.06790 1.64382 1.16610 1.21156 0.86641 0.76856 0.84752 1.90699 1.14957 1.54216 1.80859 1.21828 1.01233 1.01595 0.93047 1.21468 0.95887 1.01750 0.95039 1.21646 1.00029 0.98812 0.94242 1.19098 0.93001 0.96716 0.92933 1.21276 0.93033 1.41051 1.00465 0.92760 1.25047 0.94863 0.96045 0.98664 1.69975 1.02414 1.48092 1.32977 0.86607 0.78941 0.79395 0.83117 1.20710 1.21256 1.19926 1.22197 1.00867 0.97647 0.82921 1.21833 0.81356 0.98571 0.92988 0.91601 1.22222 0.99526 1.05085 0.90615 1.22873 0.98926 0.95681 1.02454 1.22942 1.03774 0.97841 0.96377 1.87922 1.20606 1.77428 1.43180 0.91425 0.90489 0.91489 0.88267 0.90468 0.89087 0.89196 0.91795 0.91757 0.93465 0.93494 0.96598 0.96576 0.93040 0.90794 0.88095 0.86369 0.87597 0.89069 0.88790 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.57 37.16 0.36 -0.46 16 2 C 0.07 0.58 3.39 -26.79 -0.09 0.49 16 3 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 4 C 0.08 0.65 5.81 -3.75 -0.02 0.63 16 5 N -0.62 -7.15 3.03 -172.52 -0.52 -7.68 16 6 C 0.52 7.54 7.71 -10.98 -0.08 7.46 16 7 O -0.53 -9.88 15.45 5.56 0.09 -9.80 16 8 C -0.14 -1.86 4.08 -27.88 -0.11 -1.98 16 9 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 12 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 16 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.09 0.91 5.91 -3.53 -0.02 0.89 16 21 C 0.11 1.02 3.14 -26.58 -0.08 0.93 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 23 C -0.16 -1.21 5.71 -90.62 -0.52 -1.73 16 24 C -0.16 -1.18 9.88 -26.69 -0.26 -1.44 16 25 C -0.17 -1.22 10.20 -26.69 -0.27 -1.49 16 26 O -0.37 -3.39 8.39 -35.23 -0.30 -3.69 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.71 6.05 -51.93 -0.31 0.40 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.07 8.04 -51.93 -0.42 0.65 16 33 H 0.09 1.04 7.63 -51.93 -0.40 0.65 16 34 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.10 1.19 7.08 -51.92 -0.37 0.83 16 43 H 0.12 0.82 8.12 -51.93 -0.42 0.40 16 44 H 0.11 0.86 7.06 -51.93 -0.37 0.49 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -33.64 375.79 -9.86 -43.50 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -8.58 Total: -3.51 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.92 Total: -14.53 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.21 Total: -34.56 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.21 Total: -13.49 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.64 -9.86 -43.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.752 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds