Wall clock time and date at job start Tue Mar 31 2020 07:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.51184 * 2 1 4 4 C 1.52876 * 109.58463 * 239.98181 * 2 1 3 5 5 N 1.47153 * 108.61071 * 187.92552 * 4 2 1 6 6 C 1.34773 * 120.98246 * 230.50210 * 5 4 2 7 7 O 1.21283 * 120.00360 * 179.44019 * 6 5 4 8 8 C 1.50706 * 120.00081 * 359.71295 * 6 5 4 9 9 C 1.52998 * 109.47348 * 179.72561 * 8 6 5 10 10 C 1.52996 * 109.46929 * 179.97438 * 9 8 6 11 11 C 1.53008 * 109.46808 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46847 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99683 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99722 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00217 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00073 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99682 * 16 14 12 18 18 H 1.48498 * 109.47278 * 210.00111 * 16 14 12 19 19 H 1.48507 * 109.46754 * 329.99942 * 16 14 12 20 20 C 1.47152 * 118.03531 * 50.22234 * 5 4 2 21 21 C 1.53298 * 108.38669 * 309.71848 * 20 5 4 22 22 H 1.09005 * 109.51375 * 292.32952 * 21 20 5 23 23 C 1.52993 * 109.51191 * 172.22796 * 21 20 5 24 24 C 1.53001 * 117.49946 * 248.74537 * 23 21 20 25 25 C 1.53002 * 117.49697 * 180.08844 * 23 21 20 26 26 O 1.42962 * 109.51279 * 120.09592 * 2 1 3 27 27 H 1.09002 * 109.46786 * 299.90283 * 1 2 3 28 28 H 1.08997 * 109.46689 * 59.90229 * 1 2 3 29 29 H 1.08997 * 109.46919 * 179.90114 * 1 2 3 30 30 H 1.08997 * 109.61956 * 68.10388 * 4 2 1 31 31 H 1.09006 * 109.52204 * 307.68222 * 4 2 1 32 32 H 1.09001 * 109.46564 * 299.73030 * 8 6 5 33 33 H 1.08998 * 109.47012 * 59.72084 * 8 6 5 34 34 H 1.09000 * 109.46986 * 300.00089 * 9 8 6 35 35 H 1.09002 * 109.46857 * 60.00224 * 9 8 6 36 36 H 1.09000 * 109.47441 * 299.99910 * 10 9 8 37 37 H 1.08994 * 109.47235 * 60.00181 * 10 9 8 38 38 H 1.08996 * 109.46961 * 299.99496 * 11 10 9 39 39 H 1.08994 * 109.47402 * 59.99882 * 11 10 9 40 40 H 0.96999 * 120.00128 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.68223 * 69.44706 * 20 5 4 42 42 H 1.09009 * 109.68174 * 189.95944 * 20 5 4 43 43 H 1.09001 * 115.55141 * 34.41832 * 23 21 20 44 44 H 1.09001 * 117.49605 * 0.02562 * 24 23 21 45 45 H 1.09001 * 117.50187 * 145.02166 * 24 23 21 46 46 H 1.09001 * 117.49971 * 214.97380 * 25 23 21 47 47 H 1.08996 * 117.50022 * 0.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0424 -0.7206 -1.2471 5 7 3.5012 -0.8768 -1.1331 6 6 4.3194 -0.5044 -2.1373 7 8 5.5198 -0.6317 -2.0203 8 6 3.7430 0.0759 -3.4031 9 6 4.8781 0.4181 -4.3702 10 6 4.2928 1.0067 -5.6555 11 6 5.4279 1.3483 -6.6230 12 6 4.8515 1.9287 -7.8887 13 1 3.7825 2.0420 -7.9928 14 6 5.6888 2.3148 -8.9137 15 7 6.9906 2.1773 -8.7867 16 14 4.9745 3.0348 -10.4824 17 1 4.8681 4.5097 -10.3464 18 1 5.8617 2.7059 -11.6269 19 1 3.6256 2.4611 -10.7208 20 6 4.0407 -1.4458 0.1121 21 6 3.4313 -0.6848 1.2952 22 1 3.8037 0.3396 1.2999 23 6 3.8213 -1.3764 2.6030 24 6 2.7119 -2.0778 3.3894 25 6 3.3047 -0.7648 3.9068 26 8 2.0075 -0.6757 1.1658 27 1 -0.3633 0.5123 0.8909 28 1 -0.3632 0.5153 -0.8891 29 1 -0.3633 -1.0276 -0.0018 30 1 1.8044 -0.1324 -2.1334 31 1 1.5728 -1.7016 -1.3198 32 1 3.0778 -0.6526 -3.8666 33 1 3.1827 0.9802 -3.1659 34 1 5.5433 1.1466 -3.9066 35 1 5.4384 -0.4863 -4.6074 36 1 3.6279 0.2779 -6.1190 37 1 3.7323 1.9109 -5.4187 38 1 6.0931 2.0770 -6.1597 39 1 5.9882 0.4439 -6.8597 40 1 7.5797 2.4486 -9.5079 41 1 3.7757 -2.5009 0.1786 42 1 5.1253 -1.3382 0.1252 43 1 4.8125 -1.8297 2.6177 44 1 1.7044 -2.0469 2.9747 45 1 2.9734 -2.9923 3.9217 46 1 3.9558 -0.8161 4.7795 47 1 2.6866 0.1299 3.8329 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588165771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:04 Heat of formation + Delta-G solvation = -97.675327 kcal Electronic energy + Delta-G solvation = -23845.597579 eV Core-core repulsion = 20413.583141 eV Total energy + Delta-G solvation = -3432.014438 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.60468 -39.92025 -37.74669 -36.68871 -35.78339 -34.66127 -33.58683 -31.71404 -30.05587 -27.61908 -27.31943 -25.28106 -23.63392 -23.29671 -22.45201 -21.75079 -21.33728 -20.11796 -18.45542 -18.16484 -17.70356 -17.14549 -17.01823 -16.64883 -16.48166 -16.26541 -15.75219 -15.37338 -15.02665 -14.53923 -14.53538 -13.99422 -13.76109 -13.69426 -13.51278 -13.34385 -13.10120 -12.92601 -12.82549 -12.56278 -12.33688 -12.32410 -12.20455 -12.16578 -12.13725 -11.81247 -11.41118 -11.37557 -11.31746 -11.27674 -11.13018 -10.89518 -10.73151 -10.55081 -9.62951 -8.18613 -6.30851 1.40519 1.42868 1.51492 1.53900 1.78573 2.41981 2.50075 2.90600 3.14115 3.43025 3.58423 3.77558 3.81569 3.96206 3.99300 4.04110 4.10802 4.12868 4.20036 4.31695 4.36819 4.42719 4.54478 4.63678 4.65237 4.70167 4.78483 4.81936 4.83875 4.85794 4.93350 5.01962 5.04902 5.16202 5.24199 5.28492 5.33717 5.34230 5.37111 5.37808 5.56222 5.77528 5.87852 6.15221 6.22497 6.25281 6.87699 7.05602 7.38813 8.93672 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.032267 B = 0.002404 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.558792 B =11643.836023 C =12264.880182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.070 3.930 3 H 0.059 0.941 4 C 0.072 3.928 5 N -0.619 5.619 6 C 0.512 3.488 7 O -0.584 6.584 8 C -0.126 4.126 9 C -0.095 4.095 10 C -0.094 4.094 11 C 0.018 3.982 12 C -0.540 4.540 13 H 0.067 0.933 14 C -0.008 4.008 15 N -0.938 5.938 16 Si 0.970 3.030 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.258 1.258 20 C 0.086 3.914 21 C 0.118 3.882 22 H 0.054 0.946 23 C -0.166 4.166 24 C -0.158 4.158 25 C -0.169 4.169 26 O -0.377 6.377 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.062 0.938 38 H -0.016 1.016 39 H -0.016 1.016 40 H 0.263 0.737 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.124 0.876 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.596 -7.455 25.246 31.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.012 3.988 3 H 0.077 0.923 4 C -0.050 4.050 5 N -0.352 5.352 6 C 0.303 3.697 7 O -0.464 6.464 8 C -0.166 4.166 9 C -0.134 4.134 10 C -0.132 4.132 11 C -0.019 4.019 12 C -0.578 4.578 13 H 0.085 0.915 14 C -0.205 4.205 15 N -0.579 5.579 16 Si 0.794 3.206 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.182 1.182 20 C -0.037 4.037 21 C 0.060 3.940 22 H 0.072 0.928 23 C -0.185 4.185 24 C -0.194 4.194 25 C -0.206 4.206 26 O -0.296 6.296 27 H 0.085 0.915 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.108 0.892 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.142 0.858 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.944 -7.591 25.347 30.892 hybrid contribution 0.828 0.458 -1.086 1.440 sum -15.117 -7.133 24.261 29.462 Atomic orbital electron populations 1.21730 0.90036 1.03792 1.03917 1.22555 0.97021 0.94983 0.84230 0.92326 1.22722 0.78116 1.03364 1.00764 1.48309 1.08056 1.62894 1.15961 1.21319 0.86163 0.76641 0.85601 1.90684 1.17183 1.56656 1.81905 1.21714 0.99637 1.03655 0.91549 1.21252 0.97083 0.99985 0.95037 1.21437 0.97905 1.00024 0.93799 1.19064 0.94387 0.94320 0.94149 1.21750 0.93795 1.41000 1.01263 0.91455 1.26111 0.95170 0.96401 1.02861 1.70136 1.04146 1.49241 1.34376 0.85373 0.78596 0.78734 0.77884 1.19704 1.21027 1.18226 1.22246 0.99990 0.98300 0.83192 1.21706 0.81483 0.97780 0.93049 0.92813 1.22257 1.00129 1.05793 0.90300 1.22890 0.98195 0.96269 1.02095 1.22990 1.03660 0.97609 0.96294 1.87936 1.20215 1.77564 1.43890 0.91466 0.88751 0.91171 0.86410 0.89155 0.86254 0.86279 0.93915 0.93914 0.91939 0.91900 0.99773 0.99766 0.92877 0.90010 0.89967 0.85784 0.88364 0.87811 0.87507 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.57 71.98 0.69 -0.49 16 2 C 0.07 0.95 3.39 30.55 0.10 1.05 16 3 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 4 C 0.07 1.01 5.81 86.21 0.50 1.52 16 5 N -0.62 -13.45 3.03 -818.13 -2.48 -15.92 16 6 C 0.51 14.73 7.71 87.66 0.68 15.40 16 7 O -0.58 -22.53 15.45 -3.04 -0.05 -22.57 16 8 C -0.13 -3.17 4.08 29.85 0.12 -3.05 16 9 C -0.10 -3.47 4.50 30.59 0.14 -3.34 16 10 C -0.09 -3.82 5.15 30.60 0.16 -3.66 16 11 C 0.02 0.99 4.97 29.85 0.15 1.14 16 12 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 13 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 14 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 15 N -0.94 -59.28 13.29 21.45 0.28 -58.99 16 16 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 20 C 0.09 1.78 5.91 86.36 0.51 2.29 16 21 C 0.12 2.11 3.14 30.69 0.10 2.20 16 22 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 23 C -0.17 -2.45 5.71 -10.79 -0.06 -2.51 16 24 C -0.16 -2.06 9.88 30.62 0.30 -1.75 16 25 C -0.17 -2.18 10.20 30.62 0.31 -1.87 16 26 O -0.38 -6.32 8.39 -148.98 -1.25 -7.57 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.12 1.23 6.05 -2.39 -0.01 1.21 16 31 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.12 2.38 8.04 -2.39 -0.02 2.36 16 33 H 0.12 2.34 7.63 -2.39 -0.02 2.32 16 34 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 35 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 39 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 40 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 2.04 7.08 -2.38 -0.02 2.02 16 43 H 0.12 1.65 8.12 -2.39 -0.02 1.63 16 44 H 0.10 1.45 7.06 -2.39 -0.02 1.44 16 45 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -75.34 375.79 3.84 -71.50 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.91 Total: 10.92 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 4.39 Total: -24.14 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -2.19 Total: -74.91 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.30 Total: -30.14 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -75.34 3.84 -71.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.172 kcal (2) G-P(sol) polarization free energy of solvation -75.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds