Wall clock time and date at job start Tue Mar 31 2020 07:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.46736 * 2 1 4 4 C 1.42900 * 114.00123 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.87496 * 18.68785 * 4 3 2 6 6 C 1.53916 * 113.64986 * 247.25903 * 4 3 2 7 7 C 1.53924 * 87.22081 * 270.36786 * 6 4 3 8 8 H 1.08992 * 113.73142 * 89.64306 * 7 6 4 9 9 N 1.46504 * 113.64756 * 220.65066 * 7 6 4 10 10 C 1.34776 * 119.99586 * 184.66304 * 9 7 6 11 11 O 1.21287 * 120.00388 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99914 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.47208 * 179.97438 * 12 10 9 14 14 C 1.50690 * 109.47156 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00468 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00259 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99503 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00361 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46798 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47089 * 120.00014 * 18 16 14 21 21 H 1.48500 * 109.46779 * 240.00169 * 18 16 14 22 22 C 1.53015 * 86.85573 * 335.13712 * 7 6 4 23 23 C 1.53563 * 115.13090 * 268.16616 * 22 7 6 24 24 C 1.55070 * 103.98226 * 206.86900 * 23 22 7 25 25 C 1.54946 * 102.85974 * 37.29771 * 24 23 22 26 26 C 1.53166 * 115.37264 * 142.15512 * 22 7 6 27 27 H 1.09001 * 109.46821 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47328 * 299.99439 * 1 2 3 29 29 H 1.09002 * 109.47746 * 60.00034 * 1 2 3 30 30 H 1.08998 * 109.46808 * 240.00633 * 2 1 3 31 31 H 1.08997 * 109.47346 * 120.00114 * 2 1 3 32 32 H 1.09006 * 113.59020 * 155.78732 * 6 4 3 33 33 H 1.08996 * 113.59291 * 24.95574 * 6 4 3 34 34 H 0.96999 * 120.00514 * 4.66172 * 9 7 6 35 35 H 1.09000 * 109.47234 * 59.99974 * 12 10 9 36 36 H 1.09002 * 109.46893 * 299.99512 * 12 10 9 37 37 H 1.09001 * 109.47439 * 300.00325 * 13 12 10 38 38 H 1.09000 * 109.46845 * 59.99980 * 13 12 10 39 39 H 0.97007 * 119.99593 * 179.97438 * 17 16 14 40 40 H 1.09004 * 110.52502 * 325.49071 * 23 22 7 41 41 H 1.09001 * 110.52827 * 88.24853 * 23 22 7 42 42 H 1.08993 * 110.73683 * 278.95397 * 24 23 22 43 43 H 1.09004 * 110.88779 * 155.71135 * 24 23 22 44 44 H 1.08999 * 110.48166 * 203.75805 * 25 24 23 45 45 H 1.09005 * 110.48188 * 81.13676 * 25 24 23 46 46 H 1.09006 * 110.09523 * 248.86084 * 26 22 7 47 47 H 1.09001 * 110.09300 * 10.45491 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 1 3.9283 0.5455 -0.3227 6 6 4.0038 2.0522 1.2996 7 6 3.8545 3.4379 0.6461 8 1 2.8870 3.9061 0.8268 9 7 4.9807 4.3368 0.9108 10 6 4.9401 5.6129 0.4792 11 8 3.9715 6.0170 -0.1287 12 6 6.0982 6.5378 0.7519 13 6 5.8003 7.9166 0.1596 14 6 6.9581 8.8416 0.4328 15 1 7.8201 8.4822 0.9752 16 6 6.9166 10.1472 -0.0086 17 7 5.8662 10.5853 -0.6677 18 14 8.3521 11.2936 0.3295 19 1 9.4021 10.5629 1.0835 20 1 8.9126 11.7779 -0.9576 21 1 7.8824 12.4516 1.1319 22 6 3.9466 2.7190 -0.7015 23 6 5.3625 2.6060 -1.2850 24 6 5.1313 2.5211 -2.8160 25 6 3.9422 3.4892 -3.0393 26 6 3.0398 3.2734 -1.8044 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.0391 1.7685 1.4889 33 1 3.3590 1.9069 2.1663 34 1 5.7555 4.0135 1.3966 35 1 7.0014 6.1337 0.2946 36 1 6.2452 6.6284 1.8282 37 1 5.6535 7.8258 -0.9167 38 1 4.8970 8.3209 0.6165 39 1 5.8368 11.5039 -0.9779 40 1 5.9503 3.4895 -1.0357 41 1 5.8545 1.7035 -0.9222 42 1 4.8632 1.5064 -3.1101 43 1 6.0122 2.8595 -3.3615 44 1 3.4067 3.2311 -3.9529 45 1 4.2926 4.5206 -3.0801 46 1 2.2519 2.5569 -2.0370 47 1 2.6035 4.2213 -1.4892 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589706942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:06 Heat of formation + Delta-G solvation = -86.247352 kcal Electronic energy + Delta-G solvation = -24803.957607 eV Core-core repulsion = 21372.438723 eV Total energy + Delta-G solvation = -3431.518883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.97068 -38.56117 -37.19246 -35.06109 -33.39527 -32.77838 -31.08776 -30.62330 -28.65213 -26.88956 -26.02715 -24.13542 -23.15024 -21.89620 -21.47643 -20.44216 -19.50121 -18.58218 -16.98365 -16.78806 -16.02444 -15.93496 -15.51654 -15.45191 -15.13027 -14.45042 -14.33457 -13.82327 -13.54748 -13.33066 -13.08486 -12.93688 -12.66745 -12.39209 -12.22648 -12.11208 -11.95722 -11.53495 -11.44459 -11.10143 -10.98598 -10.93469 -10.87515 -10.84156 -10.56069 -10.48626 -10.34267 -10.22580 -9.91137 -9.60849 -9.53142 -9.09905 -8.89643 -8.58016 -8.28961 -5.93224 -3.97268 3.30716 3.34052 3.35620 3.41075 3.44343 3.68011 4.36355 4.40756 4.49993 4.60990 4.69938 4.80220 4.89911 4.94247 5.06726 5.09674 5.19613 5.27524 5.41730 5.45446 5.53644 5.58342 5.63957 5.66889 5.69851 5.73034 5.82380 5.86073 5.88423 6.01263 6.16209 6.21153 6.26793 6.29240 6.30525 6.32792 6.54836 6.60417 6.88824 6.95543 7.09310 7.78390 7.91437 8.01192 8.11360 8.42935 8.90846 9.12227 9.66076 11.17709 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.026665 B = 0.003157 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.826385 B = 8866.446763 C = 9090.301248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.359 6.359 4 C 0.078 3.922 5 H 0.076 0.924 6 C -0.163 4.163 7 C 0.146 3.854 8 H 0.105 0.895 9 N -0.734 5.734 10 C 0.509 3.491 11 O -0.528 6.528 12 C -0.131 4.131 13 C 0.038 3.962 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.889 5.889 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.090 4.090 23 C -0.097 4.097 24 C -0.123 4.123 25 C -0.125 4.125 26 C -0.103 4.103 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.395 0.605 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.260 0.740 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.778 -25.080 1.225 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.019 3.981 5 H 0.093 0.907 6 C -0.201 4.201 7 C 0.041 3.959 8 H 0.123 0.877 9 N -0.387 5.387 10 C 0.298 3.702 11 O -0.403 6.403 12 C -0.171 4.171 13 C 0.001 3.999 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.091 4.091 23 C -0.134 4.134 24 C -0.160 4.160 25 C -0.162 4.162 26 C -0.140 4.140 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.229 0.771 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.703 -24.433 0.695 25.099 hybrid contribution 1.283 0.253 0.462 1.387 sum -4.420 -24.180 1.157 24.608 Atomic orbital electron populations 1.21744 0.93740 1.02093 1.03337 1.22515 0.95586 0.83997 0.99857 1.87926 1.19558 1.25952 1.94379 1.22862 0.81574 0.97494 0.96126 0.90654 1.23817 1.01782 0.96242 0.98286 1.22271 0.91666 0.87952 0.94037 0.87715 1.46189 1.20651 1.11783 1.60060 1.21498 0.89578 0.81483 0.77667 1.90662 1.34756 1.75459 1.39382 1.21862 0.94796 0.98063 1.02358 1.18876 0.96945 0.87393 0.96718 1.21271 1.03244 0.95825 1.36051 0.92638 1.25029 0.95889 0.98257 0.95252 1.70014 1.28641 1.16351 1.37802 0.86553 0.82640 0.80938 0.77938 1.19781 1.21038 1.21041 1.22675 0.96287 0.94400 0.95782 1.22041 0.94395 1.01937 0.95074 1.22498 0.98577 0.99173 0.95761 1.22393 0.96196 0.99965 0.97693 1.21862 0.97216 1.01473 0.93461 0.91250 0.91788 0.91741 0.93465 0.93516 0.88929 0.90286 0.77106 0.90498 0.90463 0.95862 0.95897 0.93050 0.90143 0.92065 0.92158 0.91700 0.92302 0.91225 0.91627 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.47 6.50 37.16 0.24 0.71 16 3 O -0.36 -4.01 9.10 -35.23 -0.32 -4.33 16 4 C 0.08 0.80 3.76 -26.24 -0.10 0.70 16 5 H 0.08 0.65 7.76 -51.93 -0.40 0.25 16 6 C -0.16 -1.58 7.45 -25.78 -0.19 -1.77 16 7 C 0.15 1.94 3.32 -67.44 -0.22 1.71 16 8 H 0.11 1.68 7.96 -51.93 -0.41 1.26 16 9 N -0.73 -10.30 3.98 -53.33 -0.21 -10.51 16 10 C 0.51 9.78 7.68 -10.98 -0.08 9.70 16 11 O -0.53 -12.38 15.53 5.55 0.09 -12.30 16 12 C -0.13 -2.67 5.64 -27.88 -0.16 -2.83 16 13 C 0.04 1.04 4.26 -27.89 -0.12 0.92 16 14 C -0.53 -15.05 9.11 -34.44 -0.31 -15.37 16 15 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.69 13.29 55.43 0.74 -26.95 16 18 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 C -0.09 -1.10 1.08 -154.11 -0.17 -1.27 16 23 C -0.10 -1.11 5.81 -25.34 -0.15 -1.26 16 24 C -0.12 -1.40 6.91 -24.61 -0.17 -1.57 16 25 C -0.12 -1.69 6.84 -24.93 -0.17 -1.86 16 26 C -0.10 -1.45 6.06 -25.87 -0.16 -1.61 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.40 4.34 8.62 -40.82 -0.35 3.98 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.08 1.07 6.85 -51.93 -0.36 0.71 16 41 H 0.06 0.57 7.88 -51.93 -0.41 0.16 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.07 0.88 7.19 -51.93 -0.37 0.50 16 47 H 0.08 1.32 7.55 -51.93 -0.39 0.93 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -33.77 374.77 -9.13 -42.90 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -8.57 Total: 1.64 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -1.47 Total: -12.93 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.52 Total: -37.47 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.23 Total: -16.63 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.77 -9.13 -42.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589706942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.348 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds