Wall clock time and date at job start Tue Mar 31 2020 07:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.46736 * 2 1 4 4 C 1.42900 * 114.00123 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.87496 * 18.68785 * 4 3 2 6 6 C 1.53916 * 113.64986 * 247.25903 * 4 3 2 7 7 C 1.53924 * 87.22081 * 270.36786 * 6 4 3 8 8 H 1.08992 * 113.73142 * 89.64306 * 7 6 4 9 9 N 1.46504 * 113.64756 * 220.65066 * 7 6 4 10 10 C 1.34776 * 119.99586 * 184.66304 * 9 7 6 11 11 O 1.21287 * 120.00388 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99914 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.47208 * 179.97438 * 12 10 9 14 14 C 1.50690 * 109.47156 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00468 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00259 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99503 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00361 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46798 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47089 * 120.00014 * 18 16 14 21 21 H 1.48500 * 109.46779 * 240.00169 * 18 16 14 22 22 C 1.53015 * 86.85573 * 335.13712 * 7 6 4 23 23 C 1.53563 * 115.13090 * 268.16616 * 22 7 6 24 24 C 1.55070 * 103.98226 * 206.86900 * 23 22 7 25 25 C 1.54946 * 102.85974 * 37.29771 * 24 23 22 26 26 C 1.53166 * 115.37264 * 142.15512 * 22 7 6 27 27 H 1.09001 * 109.46821 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47328 * 299.99439 * 1 2 3 29 29 H 1.09002 * 109.47746 * 60.00034 * 1 2 3 30 30 H 1.08998 * 109.46808 * 240.00633 * 2 1 3 31 31 H 1.08997 * 109.47346 * 120.00114 * 2 1 3 32 32 H 1.09006 * 113.59020 * 155.78732 * 6 4 3 33 33 H 1.08996 * 113.59291 * 24.95574 * 6 4 3 34 34 H 0.96999 * 120.00514 * 4.66172 * 9 7 6 35 35 H 1.09000 * 109.47234 * 59.99974 * 12 10 9 36 36 H 1.09002 * 109.46893 * 299.99512 * 12 10 9 37 37 H 1.09001 * 109.47439 * 300.00325 * 13 12 10 38 38 H 1.09000 * 109.46845 * 59.99980 * 13 12 10 39 39 H 0.97007 * 119.99593 * 179.97438 * 17 16 14 40 40 H 1.09004 * 110.52502 * 325.49071 * 23 22 7 41 41 H 1.09001 * 110.52827 * 88.24853 * 23 22 7 42 42 H 1.08993 * 110.73683 * 278.95397 * 24 23 22 43 43 H 1.09004 * 110.88779 * 155.71135 * 24 23 22 44 44 H 1.08999 * 110.48166 * 203.75805 * 25 24 23 45 45 H 1.09005 * 110.48188 * 81.13676 * 25 24 23 46 46 H 1.09006 * 110.09523 * 248.86084 * 26 22 7 47 47 H 1.09001 * 110.09300 * 10.45491 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 1 3.9283 0.5455 -0.3227 6 6 4.0038 2.0522 1.2996 7 6 3.8545 3.4379 0.6461 8 1 2.8870 3.9061 0.8268 9 7 4.9807 4.3368 0.9108 10 6 4.9401 5.6129 0.4792 11 8 3.9715 6.0170 -0.1287 12 6 6.0982 6.5378 0.7519 13 6 5.8003 7.9166 0.1596 14 6 6.9581 8.8416 0.4328 15 1 7.8201 8.4822 0.9752 16 6 6.9166 10.1472 -0.0086 17 7 5.8662 10.5853 -0.6677 18 14 8.3521 11.2936 0.3295 19 1 9.4021 10.5629 1.0835 20 1 8.9126 11.7779 -0.9576 21 1 7.8824 12.4516 1.1319 22 6 3.9466 2.7190 -0.7015 23 6 5.3625 2.6060 -1.2850 24 6 5.1313 2.5211 -2.8160 25 6 3.9422 3.4892 -3.0393 26 6 3.0398 3.2734 -1.8044 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.0391 1.7685 1.4889 33 1 3.3590 1.9069 2.1663 34 1 5.7555 4.0135 1.3966 35 1 7.0014 6.1337 0.2946 36 1 6.2452 6.6284 1.8282 37 1 5.6535 7.8258 -0.9167 38 1 4.8970 8.3209 0.6165 39 1 5.8368 11.5039 -0.9779 40 1 5.9503 3.4895 -1.0357 41 1 5.8545 1.7035 -0.9222 42 1 4.8632 1.5064 -3.1101 43 1 6.0122 2.8595 -3.3615 44 1 3.4067 3.2311 -3.9529 45 1 4.2926 4.5206 -3.0801 46 1 2.2519 2.5569 -2.0370 47 1 2.6035 4.2213 -1.4892 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589706942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:05 Heat of formation + Delta-G solvation = -107.943385 kcal Electronic energy + Delta-G solvation = -24804.898417 eV Core-core repulsion = 21372.438723 eV Total energy + Delta-G solvation = -3432.459694 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.98907 -40.01747 -38.05311 -36.16419 -35.53649 -34.02995 -32.82690 -31.57781 -29.67721 -27.99755 -27.78117 -25.46304 -23.77999 -23.36825 -22.71165 -21.52372 -21.06040 -19.57166 -18.77566 -17.87666 -17.40269 -17.01691 -16.78826 -16.45999 -16.44801 -16.19107 -15.74952 -14.93276 -14.66843 -14.40058 -14.26329 -14.20231 -13.98054 -13.76240 -13.47319 -13.21487 -13.07793 -12.85536 -12.77776 -12.46873 -12.31073 -12.20576 -11.96236 -11.91932 -11.90973 -11.68967 -11.63067 -11.52092 -11.44125 -11.27836 -11.15847 -10.58390 -10.57656 -10.31029 -9.84060 -8.18301 -6.32521 1.41192 1.42996 1.56282 1.80447 2.32678 2.46511 2.61578 3.14595 3.47702 3.48927 3.68697 3.74019 3.97166 4.11579 4.20369 4.23992 4.31702 4.36639 4.41414 4.53977 4.55321 4.57084 4.58980 4.65139 4.71594 4.79092 4.85608 4.93666 4.94386 5.04598 5.06332 5.07292 5.17229 5.20319 5.24247 5.29722 5.32968 5.44203 5.47705 5.49505 5.63939 5.68180 5.86057 6.17874 6.40297 6.72502 6.86768 7.37648 7.47578 8.94640 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.026665 B = 0.003157 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.826385 B = 8866.446763 C = 9090.301248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.388 6.388 4 C 0.087 3.913 5 H 0.108 0.892 6 C -0.141 4.141 7 C 0.128 3.872 8 H 0.066 0.934 9 N -0.705 5.705 10 C 0.510 3.490 11 O -0.584 6.584 12 C -0.119 4.119 13 C 0.045 3.955 14 C -0.541 4.541 15 H 0.076 0.924 16 C -0.009 4.009 17 N -0.939 5.939 18 Si 0.975 3.025 19 H -0.251 1.251 20 H -0.280 1.280 21 H -0.281 1.281 22 C -0.094 4.094 23 C -0.094 4.094 24 C -0.116 4.116 25 C -0.129 4.129 26 C -0.101 4.101 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.416 0.584 35 H 0.103 0.897 36 H 0.102 0.898 37 H -0.021 1.021 38 H -0.022 1.022 39 H 0.262 0.738 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.030 0.970 46 H 0.072 0.928 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -28.399 2.652 28.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.307 6.307 4 C 0.028 3.972 5 H 0.125 0.875 6 C -0.179 4.179 7 C 0.023 3.977 8 H 0.084 0.916 9 N -0.357 5.357 10 C 0.298 3.702 11 O -0.463 6.463 12 C -0.159 4.159 13 C 0.007 3.993 14 C -0.579 4.579 15 H 0.094 0.906 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.798 3.202 19 H -0.175 1.175 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.095 4.095 23 C -0.131 4.131 24 C -0.153 4.153 25 C -0.167 4.167 26 C -0.139 4.139 27 H 0.110 0.890 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.144 0.856 33 H 0.102 0.898 34 H 0.254 0.746 35 H 0.121 0.879 36 H 0.120 0.880 37 H -0.002 1.002 38 H -0.003 1.003 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.090 0.910 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.919 -27.821 2.163 28.057 hybrid contribution 0.299 1.282 -0.019 1.316 sum -2.620 -26.539 2.144 26.754 Atomic orbital electron populations 1.21778 0.93689 1.03237 1.02261 1.22721 0.95746 0.82764 1.01222 1.87920 1.20261 1.28102 1.94460 1.22840 0.81524 0.97344 0.95442 0.87454 1.23798 1.03812 0.92151 0.98105 1.22402 0.89565 0.89196 0.96552 0.91586 1.45836 1.21569 1.09936 1.58407 1.21289 0.88434 0.83061 0.77413 1.90660 1.36620 1.76848 1.42166 1.21627 0.96176 0.94669 1.03423 1.18647 0.95136 0.91455 0.94020 1.21754 1.03896 0.96342 1.35899 0.90559 1.26172 0.99145 1.00549 0.94759 1.70201 1.31474 1.16995 1.39225 0.85260 0.78732 0.78160 0.78010 1.17467 1.20602 1.20656 1.22753 0.96723 0.95710 0.94332 1.22050 0.93420 1.02724 0.94955 1.22499 0.97219 0.99589 0.96018 1.22390 0.97601 0.98613 0.98067 1.21789 0.97960 0.99357 0.94760 0.88980 0.92726 0.92986 0.92209 0.91838 0.85624 0.89775 0.74643 0.87906 0.88018 1.00229 1.00339 0.92913 0.92262 0.88265 0.89532 0.91468 0.91184 0.95146 0.90977 0.95272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.05 0.70 6.50 71.98 0.47 1.17 16 3 O -0.39 -8.06 9.10 -148.98 -1.36 -9.42 16 4 C 0.09 1.51 3.76 30.91 0.12 1.62 16 5 H 0.11 1.25 7.76 -2.39 -0.02 1.23 16 6 C -0.14 -2.25 7.45 31.21 0.23 -2.02 16 7 C 0.13 3.36 3.32 45.31 0.15 3.51 16 8 H 0.07 2.27 7.96 -2.39 -0.02 2.26 16 9 N -0.70 -19.30 3.98 -441.02 -1.76 -21.05 16 10 C 0.51 20.34 7.68 87.66 0.67 21.01 16 11 O -0.58 -29.86 15.53 -3.05 -0.05 -29.90 16 12 C -0.12 -4.90 5.64 29.85 0.17 -4.74 16 13 C 0.05 2.58 4.26 29.84 0.13 2.71 16 14 C -0.54 -31.41 9.11 25.60 0.23 -31.18 16 15 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 16 C -0.01 -0.54 5.46 84.66 0.46 -0.08 16 17 N -0.94 -60.90 13.29 21.45 0.28 -60.62 16 18 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 19 H -0.25 -10.64 7.11 99.48 0.71 -9.94 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 C -0.09 -2.21 1.08 -51.93 -0.06 -2.26 16 23 C -0.09 -1.92 5.81 31.49 0.18 -1.74 16 24 C -0.12 -2.45 6.91 31.97 0.22 -2.22 16 25 C -0.13 -3.66 6.84 31.76 0.22 -3.44 16 26 C -0.10 -3.02 6.06 31.15 0.19 -2.83 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.13 1.24 8.10 -2.38 -0.02 1.22 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.42 7.93 8.62 -92.71 -0.80 7.13 16 35 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 36 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 37 H -0.02 -1.35 8.10 -2.39 -0.02 -1.37 16 38 H -0.02 -1.42 8.10 -2.39 -0.02 -1.44 16 39 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 40 H 0.06 1.47 6.85 -2.39 -0.02 1.46 16 41 H 0.10 1.31 7.88 -2.39 -0.02 1.29 16 42 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.07 2.00 7.19 -2.38 -0.02 1.98 16 47 H 0.03 1.12 7.55 -2.39 -0.02 1.10 16 Total: -1.00 -81.27 374.77 3.41 -77.86 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.13 Total: 17.83 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 4.12 Total: -21.74 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -1.47 Total: -81.67 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -1.40 Total: -39.32 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -81.27 3.41 -77.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589706942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.085 kcal (2) G-P(sol) polarization free energy of solvation -81.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds