Wall clock time and date at job start Tue Mar 31 2020 07:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47119 * 2 1 4 4 C 1.42898 * 114.00606 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.87109 * 18.68160 * 4 3 2 6 6 C 1.53917 * 113.64940 * 247.25583 * 4 3 2 7 7 C 1.53920 * 87.22029 * 220.64548 * 6 4 3 8 8 H 1.09003 * 113.65168 * 270.36687 * 7 6 4 9 9 N 1.46501 * 113.64979 * 139.35133 * 7 6 4 10 10 C 1.34780 * 120.00190 * 175.33365 * 9 7 6 11 11 O 1.21282 * 119.99765 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00125 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.46997 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46907 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00314 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99713 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99923 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99845 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46976 * 90.00018 * 18 16 14 20 20 H 1.48494 * 109.47524 * 210.00019 * 18 16 14 21 21 H 1.48501 * 109.47227 * 330.00044 * 18 16 14 22 22 C 1.53003 * 86.85513 * 24.86238 * 7 6 4 23 23 C 1.53182 * 115.36948 * 217.84087 * 22 7 6 24 24 C 1.54469 * 106.32795 * 230.32645 * 23 22 7 25 25 C 1.55048 * 104.18564 * 336.54085 * 24 23 22 26 26 C 1.53560 * 115.13334 * 91.83691 * 22 7 6 27 27 H 1.09002 * 109.46995 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47300 * 300.00084 * 1 2 3 29 29 H 1.08997 * 109.47132 * 60.00733 * 1 2 3 30 30 H 1.08991 * 109.47457 * 239.99489 * 2 1 3 31 31 H 1.09007 * 109.47006 * 119.99174 * 2 1 3 32 32 H 1.08994 * 113.59680 * 335.23377 * 6 4 3 33 33 H 1.09006 * 113.59303 * 106.06196 * 6 4 3 34 34 H 0.96996 * 120.00073 * 355.34527 * 9 7 6 35 35 H 1.09006 * 109.47260 * 300.00349 * 12 10 9 36 36 H 1.09003 * 109.47187 * 60.00450 * 12 10 9 37 37 H 1.08990 * 109.47407 * 300.00172 * 13 12 10 38 38 H 1.09000 * 109.47152 * 60.00565 * 13 12 10 39 39 H 0.97002 * 119.99506 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.09039 * 349.56454 * 23 22 7 41 41 H 1.09000 * 110.09221 * 111.09683 * 23 22 7 42 42 H 1.09004 * 110.47729 * 95.18351 * 24 23 22 43 43 H 1.08997 * 110.48373 * 217.81013 * 24 23 22 44 44 H 1.08997 * 110.68771 * 279.15023 * 25 24 23 45 45 H 1.08994 * 110.90166 * 155.92525 * 25 24 23 46 46 H 1.09000 * 110.52830 * 271.74641 * 26 22 7 47 47 H 1.09004 * 110.52492 * 34.35147 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 1 3.9282 0.5454 -0.3226 6 6 4.0038 2.0523 1.2995 7 6 4.9821 2.8485 0.4175 8 1 5.9146 2.3221 0.2136 9 7 5.1912 4.2267 0.8680 10 6 6.0943 5.0097 0.2451 11 8 6.7335 4.5734 -0.6887 12 6 6.3097 6.4272 0.7089 13 6 7.3792 7.0913 -0.1607 14 6 7.5942 8.5091 0.3027 15 1 7.0253 8.8975 1.1345 16 6 8.5172 9.3104 -0.3353 17 7 9.2096 8.8376 -1.3485 18 14 8.7833 11.0680 0.2386 19 1 9.8463 11.0947 1.2752 20 1 9.1951 11.9083 -0.9143 21 1 7.5199 11.5983 0.8114 22 6 3.9466 2.7189 -0.7015 23 6 4.5206 2.4994 -2.1046 24 6 3.8407 3.5416 -3.0199 25 6 2.5190 3.8866 -2.2864 26 6 2.9380 3.8731 -0.7936 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5137 0.8901 32 1 3.2964 2.6793 1.8423 33 1 4.4920 1.3148 1.9367 34 1 4.6798 4.5758 1.6146 35 1 5.3760 6.9832 0.6239 36 1 6.6371 6.4236 1.7486 37 1 8.3129 6.5355 -0.0761 38 1 7.0514 7.0951 -1.2002 39 1 9.8592 9.4012 -1.7971 40 1 5.5994 2.6552 -2.0965 41 1 4.2907 1.4914 -2.4498 42 1 4.4657 4.4294 -3.1168 43 1 3.6334 3.1113 -3.9996 44 1 1.7611 3.1279 -2.4814 45 1 2.1590 4.8734 -2.5773 46 1 2.0754 3.6787 -0.1563 47 1 3.4102 4.8162 -0.5184 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589706947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:12 Heat of formation + Delta-G solvation = -88.122750 kcal Electronic energy + Delta-G solvation = -24798.482488 eV Core-core repulsion = 21366.882281 eV Total energy + Delta-G solvation = -3431.600207 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.95242 -38.58240 -37.15057 -35.10092 -33.40608 -32.80449 -31.16886 -30.66748 -28.61831 -26.86701 -26.01517 -24.07995 -23.02658 -22.03874 -21.44125 -20.45609 -19.52019 -18.52024 -17.04276 -16.79070 -16.03542 -15.93772 -15.53263 -15.38322 -15.23422 -14.44884 -14.34067 -13.90004 -13.54327 -13.19121 -13.01839 -12.98181 -12.74665 -12.46499 -12.16447 -12.04488 -12.01586 -11.53765 -11.42621 -11.11929 -10.94042 -10.91642 -10.83684 -10.67350 -10.60699 -10.50093 -10.44659 -10.36228 -9.91709 -9.62061 -9.45575 -9.12478 -8.93339 -8.63370 -8.29392 -5.93833 -3.97885 3.29454 3.34021 3.34800 3.40920 3.43623 3.81632 4.32785 4.40126 4.49713 4.54697 4.61193 4.79016 4.89270 4.98289 5.05126 5.08707 5.25271 5.35591 5.38623 5.41153 5.51104 5.61188 5.64045 5.65971 5.68770 5.71803 5.81803 5.87506 6.02691 6.06933 6.12241 6.21063 6.25637 6.28580 6.29447 6.37856 6.50614 6.57053 6.85254 6.94210 7.09614 7.77304 7.90239 7.97650 8.10330 8.42068 8.87053 9.11160 9.65467 11.17109 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.029215 B = 0.003102 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.179424 B = 9023.586508 C = 9262.751803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.077 3.923 5 H 0.087 0.913 6 C -0.159 4.159 7 C 0.139 3.861 8 H 0.103 0.897 9 N -0.729 5.729 10 C 0.511 3.489 11 O -0.530 6.530 12 C -0.131 4.131 13 C 0.039 3.961 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.086 4.086 23 C -0.110 4.110 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.091 4.091 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.397 0.603 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.022 0.978 38 H 0.023 0.977 39 H 0.260 0.740 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.973 -18.530 3.805 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C 0.018 3.982 5 H 0.105 0.895 6 C -0.197 4.197 7 C 0.033 3.967 8 H 0.121 0.879 9 N -0.382 5.382 10 C 0.300 3.700 11 O -0.404 6.404 12 C -0.171 4.171 13 C 0.001 3.999 14 C -0.565 4.565 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.088 4.088 23 C -0.148 4.148 24 C -0.160 4.160 25 C -0.157 4.157 26 C -0.128 4.128 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.231 0.769 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.468 -18.629 2.979 25.042 hybrid contribution 0.147 0.802 0.663 1.051 sum -16.321 -17.827 3.642 24.443 Atomic orbital electron populations 1.21734 0.93927 1.02039 1.03119 1.22490 0.95495 0.84384 0.99796 1.87961 1.20296 1.25625 1.94493 1.23434 0.81193 0.97515 0.96055 0.89466 1.23810 0.98527 0.99988 0.97394 1.22000 0.96679 0.83678 0.94368 0.87907 1.46075 1.42996 1.12326 1.36811 1.21508 0.77760 0.88626 0.82156 1.90650 1.46722 1.75094 1.27979 1.21864 1.03049 0.89958 1.02219 1.18873 0.92431 0.93998 0.94579 1.21237 1.21750 0.97352 1.16123 0.92668 1.25023 0.95939 0.98423 0.95011 1.69999 1.24838 1.36428 1.21600 0.86604 0.78417 0.84796 0.78210 1.20697 1.21239 1.19899 1.22740 0.95816 0.95016 0.95244 1.22043 1.01211 0.98338 0.93164 1.22363 0.96538 0.99370 0.97722 1.22468 0.97159 1.00781 0.95244 1.21870 0.97321 0.96927 0.96709 0.91356 0.91914 0.91862 0.93563 0.93607 0.88690 0.90732 0.76876 0.90406 0.90414 0.95918 0.95850 0.92990 0.90337 0.92552 0.91227 0.92349 0.91896 0.92034 0.91039 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.06 0.43 6.50 37.16 0.24 0.67 16 3 O -0.37 -3.78 9.00 -35.23 -0.32 -4.10 16 4 C 0.08 0.77 3.72 -26.24 -0.10 0.67 16 5 H 0.09 0.78 7.84 -51.93 -0.41 0.38 16 6 C -0.16 -1.52 7.45 -25.78 -0.19 -1.72 16 7 C 0.14 1.74 3.37 -67.45 -0.23 1.51 16 8 H 0.10 1.42 7.96 -51.93 -0.41 1.00 16 9 N -0.73 -10.11 3.98 -53.34 -0.21 -10.32 16 10 C 0.51 9.66 7.68 -10.99 -0.08 9.57 16 11 O -0.53 -12.11 15.54 5.56 0.09 -12.02 16 12 C -0.13 -2.66 5.64 -27.89 -0.16 -2.82 16 13 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 14 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.62 13.29 55.43 0.74 -26.89 16 18 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.09 -1.06 1.09 -154.12 -0.17 -1.22 16 23 C -0.11 -1.46 6.33 -25.87 -0.16 -1.63 16 24 C -0.12 -1.66 6.85 -24.88 -0.17 -1.83 16 25 C -0.12 -1.49 6.91 -24.56 -0.17 -1.66 16 26 C -0.09 -1.15 5.54 -25.35 -0.14 -1.29 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.40 4.44 8.62 -40.82 -0.35 4.09 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.08 1.23 7.55 -51.93 -0.39 0.84 16 41 H 0.06 0.65 7.90 -51.93 -0.41 0.24 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.88 7.08 -51.93 -0.37 0.51 16 47 H 0.07 1.02 6.85 -51.93 -0.36 0.66 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -33.27 374.70 -9.13 -42.41 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.57 Total: 1.66 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -1.48 Total: -13.20 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.52 Total: -37.20 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.23 Total: -16.12 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.27 -9.13 -42.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589706947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.718 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds