Wall clock time and date at job start Tue Mar 31 2020 07:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47119 * 2 1 4 4 C 1.42898 * 114.00606 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.87109 * 18.68160 * 4 3 2 6 6 C 1.53917 * 113.64940 * 247.25583 * 4 3 2 7 7 C 1.53920 * 87.22029 * 220.64548 * 6 4 3 8 8 H 1.09003 * 113.65168 * 270.36687 * 7 6 4 9 9 N 1.46501 * 113.64979 * 139.35133 * 7 6 4 10 10 C 1.34780 * 120.00190 * 175.33365 * 9 7 6 11 11 O 1.21282 * 119.99765 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00125 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.46997 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46907 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00314 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99713 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99923 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99845 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46976 * 90.00018 * 18 16 14 20 20 H 1.48494 * 109.47524 * 210.00019 * 18 16 14 21 21 H 1.48501 * 109.47227 * 330.00044 * 18 16 14 22 22 C 1.53003 * 86.85513 * 24.86238 * 7 6 4 23 23 C 1.53182 * 115.36948 * 217.84087 * 22 7 6 24 24 C 1.54469 * 106.32795 * 230.32645 * 23 22 7 25 25 C 1.55048 * 104.18564 * 336.54085 * 24 23 22 26 26 C 1.53560 * 115.13334 * 91.83691 * 22 7 6 27 27 H 1.09002 * 109.46995 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47300 * 300.00084 * 1 2 3 29 29 H 1.08997 * 109.47132 * 60.00733 * 1 2 3 30 30 H 1.08991 * 109.47457 * 239.99489 * 2 1 3 31 31 H 1.09007 * 109.47006 * 119.99174 * 2 1 3 32 32 H 1.08994 * 113.59680 * 335.23377 * 6 4 3 33 33 H 1.09006 * 113.59303 * 106.06196 * 6 4 3 34 34 H 0.96996 * 120.00073 * 355.34527 * 9 7 6 35 35 H 1.09006 * 109.47260 * 300.00349 * 12 10 9 36 36 H 1.09003 * 109.47187 * 60.00450 * 12 10 9 37 37 H 1.08990 * 109.47407 * 300.00172 * 13 12 10 38 38 H 1.09000 * 109.47152 * 60.00565 * 13 12 10 39 39 H 0.97002 * 119.99506 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.09039 * 349.56454 * 23 22 7 41 41 H 1.09000 * 110.09221 * 111.09683 * 23 22 7 42 42 H 1.09004 * 110.47729 * 95.18351 * 24 23 22 43 43 H 1.08997 * 110.48373 * 217.81013 * 24 23 22 44 44 H 1.08997 * 110.68771 * 279.15023 * 25 24 23 45 45 H 1.08994 * 110.90166 * 155.92525 * 25 24 23 46 46 H 1.09000 * 110.52830 * 271.74641 * 26 22 7 47 47 H 1.09004 * 110.52492 * 34.35147 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 1 3.9282 0.5454 -0.3226 6 6 4.0038 2.0523 1.2995 7 6 4.9821 2.8485 0.4175 8 1 5.9146 2.3221 0.2136 9 7 5.1912 4.2267 0.8680 10 6 6.0943 5.0097 0.2451 11 8 6.7335 4.5734 -0.6887 12 6 6.3097 6.4272 0.7089 13 6 7.3792 7.0913 -0.1607 14 6 7.5942 8.5091 0.3027 15 1 7.0253 8.8975 1.1345 16 6 8.5172 9.3104 -0.3353 17 7 9.2096 8.8376 -1.3485 18 14 8.7833 11.0680 0.2386 19 1 9.8463 11.0947 1.2752 20 1 9.1951 11.9083 -0.9143 21 1 7.5199 11.5983 0.8114 22 6 3.9466 2.7189 -0.7015 23 6 4.5206 2.4994 -2.1046 24 6 3.8407 3.5416 -3.0199 25 6 2.5190 3.8866 -2.2864 26 6 2.9380 3.8731 -0.7936 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5137 0.8901 32 1 3.2964 2.6793 1.8423 33 1 4.4920 1.3148 1.9367 34 1 4.6798 4.5758 1.6146 35 1 5.3760 6.9832 0.6239 36 1 6.6371 6.4236 1.7486 37 1 8.3129 6.5355 -0.0761 38 1 7.0514 7.0951 -1.2002 39 1 9.8592 9.4012 -1.7971 40 1 5.5994 2.6552 -2.0965 41 1 4.2907 1.4914 -2.4498 42 1 4.4657 4.4294 -3.1168 43 1 3.6334 3.1113 -3.9996 44 1 1.7611 3.1279 -2.4814 45 1 2.1590 4.8734 -2.5773 46 1 2.0754 3.6787 -0.1563 47 1 3.4102 4.8162 -0.5184 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589706947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:11 Heat of formation + Delta-G solvation = -108.715504 kcal Electronic energy + Delta-G solvation = -24799.375457 eV Core-core repulsion = 21366.882281 eV Total energy + Delta-G solvation = -3432.493176 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.97256 -40.00497 -37.98018 -36.20473 -35.53261 -34.04975 -32.82474 -31.63061 -29.67312 -27.97461 -27.79458 -25.35564 -23.68840 -23.26431 -22.88493 -21.52673 -21.05649 -19.54099 -18.76863 -17.88798 -17.37860 -16.90899 -16.86090 -16.52483 -16.40508 -16.24491 -15.75705 -14.99170 -14.52608 -14.39807 -14.26083 -14.16433 -14.01468 -13.78299 -13.38779 -13.21441 -13.04611 -12.81914 -12.81278 -12.48817 -12.26591 -12.15720 -12.02332 -11.91185 -11.87371 -11.66168 -11.61342 -11.48534 -11.44007 -11.36488 -11.29471 -10.59197 -10.56772 -10.22174 -9.87844 -8.18084 -6.32009 1.41295 1.44188 1.55081 1.79719 2.25166 2.44188 2.89044 3.14798 3.42824 3.47840 3.62555 3.68433 3.96484 4.09497 4.15860 4.26805 4.28742 4.36364 4.45322 4.54641 4.57387 4.57482 4.57860 4.63339 4.71247 4.80914 4.87405 4.91970 4.97421 5.03482 5.05588 5.10749 5.15444 5.20296 5.23718 5.30561 5.34941 5.43983 5.48126 5.49574 5.64913 5.67113 5.86380 6.18475 6.40210 6.69575 6.86847 7.37899 7.45101 8.94571 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.029215 B = 0.003102 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.179424 B = 9023.586508 C = 9262.751803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.378 6.378 4 C 0.087 3.913 5 H 0.102 0.898 6 C -0.139 4.139 7 C 0.125 3.875 8 H 0.088 0.912 9 N -0.704 5.704 10 C 0.513 3.487 11 O -0.579 6.579 12 C -0.121 4.121 13 C 0.046 3.954 14 C -0.543 4.543 15 H 0.075 0.925 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.973 3.027 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.256 1.256 22 C -0.092 4.092 23 C -0.110 4.110 24 C -0.125 4.125 25 C -0.114 4.114 26 C -0.087 4.087 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.414 0.586 35 H 0.099 0.901 36 H 0.102 0.898 37 H -0.019 1.019 38 H -0.020 1.020 39 H 0.262 0.738 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.083 0.917 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.258 -19.113 6.105 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.297 6.297 4 C 0.028 3.972 5 H 0.120 0.880 6 C -0.177 4.177 7 C 0.020 3.980 8 H 0.106 0.894 9 N -0.356 5.356 10 C 0.301 3.699 11 O -0.458 6.458 12 C -0.161 4.161 13 C 0.008 3.992 14 C -0.581 4.581 15 H 0.093 0.907 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.797 3.203 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.179 1.179 22 C -0.094 4.094 23 C -0.147 4.147 24 C -0.163 4.163 25 C -0.151 4.151 26 C -0.125 4.125 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.252 0.748 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.000 1.000 38 H -0.001 1.001 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.101 0.899 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.812 -19.234 5.334 27.428 hybrid contribution 0.833 0.913 -0.107 1.240 sum -17.979 -18.321 5.227 26.196 Atomic orbital electron populations 1.21746 0.93230 1.03090 1.02571 1.22688 0.96085 0.83310 1.00695 1.87936 1.19954 1.27326 1.94521 1.23311 0.81622 0.96779 0.95450 0.88046 1.23729 0.97244 0.99605 0.97147 1.22183 0.96930 0.82650 0.96266 0.89421 1.45757 1.41133 1.12568 1.36174 1.21206 0.78313 0.88550 0.81801 1.90645 1.49045 1.75862 1.30284 1.21630 1.01710 0.90842 1.01888 1.18639 0.92649 0.94258 0.93623 1.21729 1.21879 0.97953 1.16517 0.90735 1.26141 0.95522 1.03889 0.94928 1.70182 1.25750 1.38583 1.23278 0.85330 0.79128 0.78112 0.77741 1.19624 1.21171 1.17945 1.22793 0.95706 0.96475 0.94402 1.22021 0.99148 0.99225 0.94318 1.22355 0.96811 0.98164 0.98986 1.22448 0.96569 1.01191 0.94929 1.21813 0.97593 0.96127 0.96948 0.89559 0.92208 0.92634 0.93015 0.92340 0.87763 0.88571 0.74833 0.88309 0.87983 1.00023 1.00148 0.92886 0.93639 0.90532 0.94852 0.90950 0.90402 0.92146 0.89891 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 71.98 0.74 -0.85 16 2 C 0.05 0.61 6.50 71.98 0.47 1.07 16 3 O -0.38 -6.67 9.00 -148.98 -1.34 -8.01 16 4 C 0.09 1.52 3.72 30.91 0.11 1.63 16 5 H 0.10 1.51 7.84 -2.39 -0.02 1.49 16 6 C -0.14 -2.24 7.45 31.21 0.23 -2.00 16 7 C 0.13 3.01 3.37 45.30 0.15 3.17 16 8 H 0.09 2.44 7.96 -2.39 -0.02 2.42 16 9 N -0.70 -18.98 3.98 -441.05 -1.75 -20.74 16 10 C 0.51 19.91 7.68 87.65 0.67 20.58 16 11 O -0.58 -28.24 15.54 -3.04 -0.05 -28.29 16 12 C -0.12 -4.95 5.64 29.85 0.17 -4.78 16 13 C 0.05 2.61 4.26 29.85 0.13 2.73 16 14 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 15 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 16 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 17 N -0.94 -60.39 13.29 21.45 0.28 -60.11 16 18 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 22 C -0.09 -2.17 1.09 -51.93 -0.06 -2.22 16 23 C -0.11 -2.97 6.33 31.15 0.20 -2.77 16 24 C -0.13 -3.53 6.85 31.79 0.22 -3.31 16 25 C -0.11 -2.78 6.91 32.00 0.22 -2.56 16 26 C -0.09 -2.13 5.54 31.49 0.17 -1.96 16 27 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.10 1.54 8.10 -2.39 -0.02 1.52 16 33 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.41 8.36 8.62 -92.71 -0.80 7.56 16 35 H 0.10 3.62 8.14 -2.38 -0.02 3.60 16 36 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 37 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 38 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 39 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 40 H 0.04 1.53 7.55 -2.39 -0.02 1.51 16 41 H 0.08 1.71 7.90 -2.39 -0.02 1.69 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 45 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.08 1.84 7.08 -2.39 -0.02 1.82 16 47 H 0.05 1.45 6.85 -2.38 -0.02 1.43 16 Total: -1.00 -76.59 374.70 3.42 -73.17 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.13 Total: 19.46 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 4.13 Total: -22.44 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -1.47 Total: -80.84 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -1.39 Total: -36.30 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -76.59 3.42 -73.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589706947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.549 kcal (2) G-P(sol) polarization free energy of solvation -76.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds