Wall clock time and date at job start Tue Mar 31 2020 07:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47265 * 2 1 4 4 C 1.42906 * 114.00225 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.93268 * 341.36789 * 4 3 2 6 6 C 1.53925 * 113.65049 * 112.73260 * 4 3 2 7 7 C 1.53925 * 87.21795 * 139.35543 * 6 4 3 8 8 H 1.08995 * 113.73163 * 220.63492 * 7 6 4 9 9 N 1.46498 * 113.65071 * 89.62872 * 7 6 4 10 10 C 1.34785 * 119.99656 * 107.74090 * 9 7 6 11 11 O 1.21277 * 120.00317 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99807 * 180.02562 * 10 9 7 13 13 C 1.53003 * 109.47183 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47183 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00509 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00076 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00132 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00339 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47168 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47526 * 119.99652 * 18 16 14 21 21 H 1.48503 * 109.47098 * 239.99871 * 18 16 14 22 22 C 1.53009 * 113.65288 * 209.99926 * 4 3 2 23 23 C 1.53169 * 115.37023 * 103.34893 * 22 4 3 24 24 C 1.54474 * 106.32965 * 230.32775 * 23 22 4 25 25 C 1.55052 * 104.18122 * 336.54185 * 24 23 22 26 26 C 1.53564 * 115.12681 * 337.34536 * 22 4 3 27 27 H 1.08995 * 109.47249 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47066 * 300.00921 * 1 2 3 29 29 H 1.09009 * 109.46795 * 60.00321 * 1 2 3 30 30 H 1.08999 * 109.47207 * 239.99613 * 2 1 3 31 31 H 1.09009 * 109.46795 * 119.99679 * 2 1 3 32 32 H 1.08992 * 113.59467 * 24.77138 * 6 4 3 33 33 H 1.08999 * 113.65864 * 253.94715 * 6 4 3 34 34 H 0.96998 * 120.00683 * 287.74297 * 9 7 6 35 35 H 1.09006 * 109.47188 * 300.00106 * 12 10 9 36 36 H 1.09007 * 109.47701 * 59.99987 * 12 10 9 37 37 H 1.08994 * 109.46840 * 300.00011 * 13 12 10 38 38 H 1.08998 * 109.46802 * 60.00115 * 13 12 10 39 39 H 0.96997 * 119.99868 * 180.02562 * 17 16 14 40 40 H 1.09002 * 110.09376 * 349.56393 * 23 22 4 41 41 H 1.09002 * 110.09670 * 111.09603 * 23 22 4 42 42 H 1.09004 * 110.47609 * 95.19012 * 24 23 22 43 43 H 1.08995 * 110.48035 * 217.81731 * 24 23 22 44 44 H 1.08996 * 110.69031 * 279.14558 * 25 24 23 45 45 H 1.08994 * 110.89794 * 155.92538 * 25 24 23 46 46 H 1.09008 * 110.52637 * 271.74512 * 26 22 4 47 47 H 1.09001 * 110.52744 * 34.35392 * 26 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9293 0.5454 0.3217 6 6 4.0040 2.0518 -1.2997 7 6 4.9824 2.8481 -0.4177 8 1 5.1393 3.8736 -0.7520 9 7 6.2355 2.1405 -0.1434 10 6 7.3790 2.5416 -0.7335 11 8 7.3704 3.4879 -1.4920 12 6 8.6679 1.8134 -0.4518 13 6 9.8048 2.4646 -1.2420 14 6 11.0936 1.7361 -0.9607 15 1 11.1013 0.8931 -0.2856 16 6 12.2633 2.1462 -1.5645 17 7 12.2542 3.1730 -2.3863 18 14 13.8608 1.2427 -1.2165 19 1 13.6041 0.1317 -0.2652 20 1 14.4053 0.6936 -2.4842 21 1 14.8432 2.1849 -0.6229 22 6 3.9467 2.7186 0.7014 23 6 4.5212 2.4999 2.1043 24 6 3.8349 3.5365 3.0212 25 6 3.3837 4.6603 2.0529 26 6 2.9387 3.8735 0.7930 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.2968 2.6788 -1.8425 33 1 4.4923 1.3151 -1.9375 34 1 6.2424 1.3834 0.4629 35 1 8.8893 1.8658 0.6142 36 1 8.5689 0.7700 -0.7514 37 1 9.5832 2.4118 -2.3078 38 1 9.9041 3.5080 -0.9427 39 1 13.0771 3.4613 -2.8113 40 1 4.2971 1.4899 2.4474 41 1 5.5991 2.6620 2.0971 42 1 2.9724 3.0933 3.5191 43 1 4.5419 3.9245 3.7543 44 1 4.2158 5.3244 1.8193 45 1 2.5490 5.2224 2.4716 46 1 2.9995 4.5052 -0.0933 47 1 1.9266 3.4884 0.9179 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589706950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:14 Heat of formation + Delta-G solvation = -89.011211 kcal Electronic energy + Delta-G solvation = -24403.714319 eV Core-core repulsion = 20972.075585 eV Total energy + Delta-G solvation = -3431.638733 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.07815 -38.68481 -37.32085 -35.23335 -33.44411 -32.74168 -31.17630 -30.65535 -28.91781 -27.00016 -26.00932 -24.27977 -23.04376 -22.32350 -21.29264 -20.73882 -19.57673 -18.57769 -17.13482 -16.81223 -16.19686 -15.97648 -15.73359 -15.50963 -14.86494 -14.79571 -14.41945 -13.74604 -13.53446 -13.40739 -13.24135 -13.04991 -12.99581 -12.37678 -12.28957 -12.18406 -12.07066 -11.67915 -11.39678 -11.23806 -11.15261 -11.12323 -10.94918 -10.90437 -10.73837 -10.59602 -10.56991 -10.27061 -9.96100 -9.66074 -9.50243 -9.17195 -9.00485 -8.74655 -8.32082 -5.96037 -4.00409 3.22354 3.32442 3.36612 3.39972 3.42863 3.52932 4.22419 4.29793 4.45609 4.48905 4.66095 4.79283 4.80690 4.85733 4.98871 5.05786 5.09050 5.25131 5.35874 5.38961 5.44214 5.44929 5.49609 5.59025 5.61058 5.64796 5.71832 5.80345 5.80761 5.88416 5.93192 6.01416 6.10516 6.13392 6.15014 6.22311 6.24399 6.28149 6.78267 6.89308 7.08134 7.74873 7.86676 7.88459 8.07512 8.38869 8.78576 9.08517 9.63183 11.14947 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022279 B = 0.002973 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.508041 B = 9415.975774 C = 9893.027822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.369 6.369 4 C 0.075 3.925 5 H 0.085 0.915 6 C -0.167 4.167 7 C 0.136 3.864 8 H 0.107 0.893 9 N -0.726 5.726 10 C 0.512 3.488 11 O -0.531 6.531 12 C -0.130 4.130 13 C 0.037 3.963 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.085 4.085 23 C -0.117 4.117 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.092 4.092 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.396 0.604 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.024 0.976 39 H 0.260 0.740 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.129 -4.843 9.489 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.288 6.288 4 C 0.017 3.983 5 H 0.103 0.897 6 C -0.206 4.206 7 C 0.029 3.971 8 H 0.125 0.875 9 N -0.379 5.379 10 C 0.301 3.699 11 O -0.406 6.406 12 C -0.170 4.170 13 C -0.001 4.001 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.086 4.086 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.163 4.163 26 C -0.130 4.130 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.230 0.770 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.105 -3.880 8.805 25.955 hybrid contribution 1.073 -1.195 0.387 1.653 sum -23.032 -5.075 9.192 25.312 Atomic orbital electron populations 1.21738 0.93924 1.02103 1.03035 1.22491 0.95471 0.84295 0.99917 1.87924 1.20572 1.25799 1.94516 1.23713 0.80974 0.97075 0.96533 0.89723 1.23992 0.98703 1.00698 0.97257 1.21557 0.82961 0.97765 0.94785 0.87498 1.45938 1.07209 1.35145 1.49609 1.21589 0.85200 0.84118 0.79001 1.90669 1.86313 1.28302 1.35275 1.21873 0.92164 1.00086 1.02856 1.18900 0.89736 0.96092 0.95347 1.21256 0.92972 1.15028 1.27190 0.92580 1.25032 0.99116 0.95118 0.95170 1.70012 1.27456 1.25745 1.29605 0.86539 0.83704 0.79701 0.78036 1.19764 1.21020 1.21017 1.22665 0.95580 0.95762 0.94581 1.22085 1.00804 0.99232 0.93296 1.22354 0.99855 0.96078 0.97526 1.22561 1.00728 0.97430 0.95618 1.21945 0.98512 0.94513 0.97996 0.91303 0.91957 0.91876 0.93462 0.93580 0.88647 0.90800 0.76998 0.90239 0.90281 0.95819 0.95800 0.93006 0.91811 0.90638 0.91872 0.91777 0.91426 0.91689 0.91469 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.05 0.44 6.50 37.16 0.24 0.68 16 3 O -0.37 -3.76 8.98 -35.23 -0.32 -4.08 16 4 C 0.08 0.75 3.63 -26.24 -0.10 0.66 16 5 H 0.08 0.77 7.84 -51.93 -0.41 0.36 16 6 C -0.17 -1.94 7.54 -25.77 -0.19 -2.14 16 7 C 0.14 1.75 3.72 -67.44 -0.25 1.50 16 8 H 0.11 1.63 7.35 -51.93 -0.38 1.25 16 9 N -0.73 -10.09 4.36 -53.33 -0.23 -10.32 16 10 C 0.51 9.77 7.83 -10.98 -0.09 9.68 16 11 O -0.53 -12.51 15.58 5.56 0.09 -12.43 16 12 C -0.13 -2.61 5.64 -27.88 -0.16 -2.77 16 13 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 14 C -0.53 -14.94 9.11 -34.44 -0.31 -15.26 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.53 13.29 55.43 0.74 -26.80 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.08 -0.88 1.06 -154.11 -0.16 -1.04 16 23 C -0.12 -1.12 5.69 -25.87 -0.15 -1.27 16 24 C -0.12 -1.09 6.85 -24.87 -0.17 -1.26 16 25 C -0.13 -1.18 6.91 -24.56 -0.17 -1.35 16 26 C -0.09 -0.92 5.83 -25.35 -0.15 -1.07 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.40 4.39 7.93 -40.82 -0.32 4.07 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.06 0.55 7.90 -51.93 -0.41 0.14 16 41 H 0.08 0.80 6.94 -51.93 -0.36 0.44 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.69 7.88 -51.92 -0.41 0.28 16 47 H 0.08 0.84 7.07 -51.93 -0.37 0.47 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -33.38 374.39 -9.13 -42.51 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.54 Total: 0.58 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -1.49 Total: -11.80 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.50 Total: -37.11 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.23 Total: -16.51 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.38 -9.13 -42.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589706950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.498 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds