Wall clock time and date at job start Tue Mar 31 2020 07:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47265 * 2 1 4 4 C 1.42906 * 114.00225 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.93268 * 341.36789 * 4 3 2 6 6 C 1.53925 * 113.65049 * 112.73260 * 4 3 2 7 7 C 1.53925 * 87.21795 * 139.35543 * 6 4 3 8 8 H 1.08995 * 113.73163 * 220.63492 * 7 6 4 9 9 N 1.46498 * 113.65071 * 89.62872 * 7 6 4 10 10 C 1.34785 * 119.99656 * 107.74090 * 9 7 6 11 11 O 1.21277 * 120.00317 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99807 * 180.02562 * 10 9 7 13 13 C 1.53003 * 109.47183 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47183 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00509 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00076 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00132 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00339 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47168 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47526 * 119.99652 * 18 16 14 21 21 H 1.48503 * 109.47098 * 239.99871 * 18 16 14 22 22 C 1.53009 * 113.65288 * 209.99926 * 4 3 2 23 23 C 1.53169 * 115.37023 * 103.34893 * 22 4 3 24 24 C 1.54474 * 106.32965 * 230.32775 * 23 22 4 25 25 C 1.55052 * 104.18122 * 336.54185 * 24 23 22 26 26 C 1.53564 * 115.12681 * 337.34536 * 22 4 3 27 27 H 1.08995 * 109.47249 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47066 * 300.00921 * 1 2 3 29 29 H 1.09009 * 109.46795 * 60.00321 * 1 2 3 30 30 H 1.08999 * 109.47207 * 239.99613 * 2 1 3 31 31 H 1.09009 * 109.46795 * 119.99679 * 2 1 3 32 32 H 1.08992 * 113.59467 * 24.77138 * 6 4 3 33 33 H 1.08999 * 113.65864 * 253.94715 * 6 4 3 34 34 H 0.96998 * 120.00683 * 287.74297 * 9 7 6 35 35 H 1.09006 * 109.47188 * 300.00106 * 12 10 9 36 36 H 1.09007 * 109.47701 * 59.99987 * 12 10 9 37 37 H 1.08994 * 109.46840 * 300.00011 * 13 12 10 38 38 H 1.08998 * 109.46802 * 60.00115 * 13 12 10 39 39 H 0.96997 * 119.99868 * 180.02562 * 17 16 14 40 40 H 1.09002 * 110.09376 * 349.56393 * 23 22 4 41 41 H 1.09002 * 110.09670 * 111.09603 * 23 22 4 42 42 H 1.09004 * 110.47609 * 95.19012 * 24 23 22 43 43 H 1.08995 * 110.48035 * 217.81731 * 24 23 22 44 44 H 1.08996 * 110.69031 * 279.14558 * 25 24 23 45 45 H 1.08994 * 110.89794 * 155.92538 * 25 24 23 46 46 H 1.09008 * 110.52637 * 271.74512 * 26 22 4 47 47 H 1.09001 * 110.52744 * 34.35392 * 26 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9293 0.5454 0.3217 6 6 4.0040 2.0518 -1.2997 7 6 4.9824 2.8481 -0.4177 8 1 5.1393 3.8736 -0.7520 9 7 6.2355 2.1405 -0.1434 10 6 7.3790 2.5416 -0.7335 11 8 7.3704 3.4879 -1.4920 12 6 8.6679 1.8134 -0.4518 13 6 9.8048 2.4646 -1.2420 14 6 11.0936 1.7361 -0.9607 15 1 11.1013 0.8931 -0.2856 16 6 12.2633 2.1462 -1.5645 17 7 12.2542 3.1730 -2.3863 18 14 13.8608 1.2427 -1.2165 19 1 13.6041 0.1317 -0.2652 20 1 14.4053 0.6936 -2.4842 21 1 14.8432 2.1849 -0.6229 22 6 3.9467 2.7186 0.7014 23 6 4.5212 2.4999 2.1043 24 6 3.8349 3.5365 3.0212 25 6 3.3837 4.6603 2.0529 26 6 2.9387 3.8735 0.7930 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.2968 2.6788 -1.8425 33 1 4.4923 1.3151 -1.9375 34 1 6.2424 1.3834 0.4629 35 1 8.8893 1.8658 0.6142 36 1 8.5689 0.7700 -0.7514 37 1 9.5832 2.4118 -2.3078 38 1 9.9041 3.5080 -0.9427 39 1 13.0771 3.4613 -2.8113 40 1 4.2971 1.4899 2.4474 41 1 5.5991 2.6620 2.0971 42 1 2.9724 3.0933 3.5191 43 1 4.5419 3.9245 3.7543 44 1 4.2158 5.3244 1.8193 45 1 2.5490 5.2224 2.4716 46 1 2.9995 4.5052 -0.0933 47 1 1.9266 3.4884 0.9179 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589706950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:14 Heat of formation + Delta-G solvation = -109.631382 kcal Electronic energy + Delta-G solvation = -24404.608476 eV Core-core repulsion = 20972.075585 eV Total energy + Delta-G solvation = -3432.532891 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.06455 -40.14111 -38.08487 -36.23012 -35.54595 -33.99374 -32.82441 -31.62164 -29.70933 -27.97131 -27.76779 -25.49445 -23.76772 -23.63680 -22.63227 -21.62927 -20.98060 -19.58815 -18.79101 -17.92730 -17.46733 -17.03442 -16.74356 -16.45078 -16.40741 -16.37168 -15.78723 -14.95164 -14.55642 -14.40676 -14.27392 -14.08501 -14.01591 -13.93097 -13.63717 -13.22923 -13.02091 -12.94570 -12.84950 -12.46344 -12.39939 -12.18119 -11.96721 -11.92544 -11.89900 -11.68817 -11.63570 -11.53529 -11.38602 -11.28769 -11.15694 -10.73399 -10.57892 -10.27886 -10.00352 -8.18071 -6.32062 1.42257 1.43665 1.56912 1.69058 2.15318 2.43971 2.73907 3.15114 3.33751 3.42815 3.66372 3.78790 3.95045 4.02893 4.09017 4.23596 4.31274 4.36909 4.41398 4.49875 4.54662 4.56152 4.61096 4.64018 4.68763 4.82450 4.85612 4.89815 4.93753 4.98327 5.07583 5.08160 5.10528 5.20264 5.25101 5.31224 5.32951 5.34963 5.49392 5.51555 5.59940 5.63500 5.85931 6.17662 6.35566 6.59507 6.86938 7.34458 7.38511 8.94886 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.022279 B = 0.002973 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.508041 B = 9415.975774 C = 9893.027822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.381 6.381 4 C 0.088 3.912 5 H 0.103 0.897 6 C -0.167 4.167 7 C 0.124 3.876 8 H 0.077 0.923 9 N -0.698 5.698 10 C 0.515 3.485 11 O -0.587 6.587 12 C -0.118 4.118 13 C 0.042 3.958 14 C -0.541 4.541 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.939 5.939 18 Si 0.974 3.026 19 H -0.252 1.252 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.075 4.075 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.127 4.127 26 C -0.091 4.091 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.415 0.585 35 H 0.106 0.894 36 H 0.106 0.894 37 H -0.019 1.019 38 H -0.018 1.018 39 H 0.262 0.738 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.966 -7.563 11.823 28.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.300 6.300 4 C 0.030 3.970 5 H 0.121 0.879 6 C -0.206 4.206 7 C 0.018 3.982 8 H 0.095 0.905 9 N -0.351 5.351 10 C 0.304 3.696 11 O -0.466 6.466 12 C -0.158 4.158 13 C 0.004 3.996 14 C -0.578 4.578 15 H 0.095 0.905 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.798 3.202 19 H -0.175 1.175 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.076 4.076 23 C -0.155 4.155 24 C -0.156 4.156 25 C -0.164 4.164 26 C -0.129 4.129 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.253 0.747 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.000 1.000 38 H 0.000 1.000 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.997 -6.650 11.189 28.183 hybrid contribution 1.237 -0.311 -0.370 1.328 sum -23.760 -6.962 10.819 27.019 Atomic orbital electron populations 1.21747 0.93035 1.03164 1.02639 1.22699 0.96263 0.83287 1.00643 1.87916 1.20231 1.27393 1.94441 1.23587 0.81419 0.97339 0.94674 0.87931 1.23969 0.98255 1.00398 0.97985 1.21644 0.82922 0.96433 0.97247 0.90504 1.45550 1.06177 1.35008 1.48337 1.21368 0.86264 0.83316 0.78690 1.90658 1.87138 1.30787 1.38048 1.21642 0.90344 1.00657 1.03163 1.18689 0.92618 0.94475 0.93803 1.21745 0.93470 1.15431 1.27201 0.90502 1.26154 1.03739 0.95937 0.94753 1.70191 1.28736 1.27871 1.31082 0.85269 0.78059 0.78639 0.78244 1.17492 1.20679 1.20682 1.22577 0.94404 0.96262 0.94345 1.22110 1.00117 1.00603 0.92632 1.22361 1.00338 0.95587 0.97287 1.22567 1.00720 0.97568 0.95559 1.21939 0.98567 0.94379 0.98010 0.89542 0.92035 0.92586 0.93288 0.92251 0.88868 0.91405 0.74740 0.87607 0.87634 1.00018 1.00004 0.92888 0.89864 0.91662 0.90570 0.91521 0.92889 0.90355 0.92474 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 71.98 0.74 -0.90 16 2 C 0.05 0.63 6.50 71.98 0.47 1.10 16 3 O -0.38 -6.91 8.98 -148.98 -1.34 -8.25 16 4 C 0.09 1.57 3.63 30.91 0.11 1.69 16 5 H 0.10 1.50 7.84 -2.39 -0.02 1.48 16 6 C -0.17 -3.80 7.54 31.22 0.24 -3.57 16 7 C 0.12 3.20 3.72 45.31 0.17 3.36 16 8 H 0.08 2.49 7.35 -2.39 -0.02 2.47 16 9 N -0.70 -18.83 4.36 -441.02 -1.92 -20.75 16 10 C 0.51 19.94 7.83 87.65 0.69 20.62 16 11 O -0.59 -29.26 15.58 -3.02 -0.05 -29.31 16 12 C -0.12 -4.71 5.64 29.85 0.17 -4.54 16 13 C 0.04 2.34 4.26 29.85 0.13 2.47 16 14 C -0.54 -30.77 9.11 25.60 0.23 -30.54 16 15 H 0.08 3.97 7.74 -2.91 -0.02 3.94 16 16 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 17 N -0.94 -59.98 13.29 21.45 0.28 -59.70 16 18 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 19 H -0.25 -10.50 7.11 99.48 0.71 -9.80 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 C -0.07 -1.45 1.06 -51.93 -0.05 -1.50 16 23 C -0.12 -1.97 5.69 31.15 0.18 -1.79 16 24 C -0.12 -1.86 6.85 31.80 0.22 -1.64 16 25 C -0.13 -2.23 6.91 32.00 0.22 -2.01 16 26 C -0.09 -1.74 5.83 31.49 0.18 -1.56 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 34 H 0.41 8.15 7.93 -92.71 -0.74 7.41 16 35 H 0.11 3.66 8.14 -2.38 -0.02 3.64 16 36 H 0.11 3.65 8.14 -2.38 -0.02 3.63 16 37 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 38 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 39 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.08 1.10 7.90 -2.39 -0.02 1.09 16 41 H 0.06 1.24 6.94 -2.39 -0.02 1.23 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.06 1.19 7.88 -2.38 -0.02 1.18 16 47 H 0.09 1.62 7.07 -2.39 -0.02 1.61 16 Total: -1.00 -75.99 374.39 3.35 -72.64 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.19 Total: 17.81 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 4.15 Total: -18.84 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -1.64 Total: -80.45 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -1.38 Total: -37.56 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -75.99 3.35 -72.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589706950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.988 kcal (2) G-P(sol) polarization free energy of solvation -75.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds