Wall clock time and date at job start Tue Mar 31 2020 07:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42899 * 109.47281 * 2 1 4 4 C 1.42901 * 114.00064 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.88498 * 20.33210 * 4 3 2 6 6 C 1.53952 * 113.66468 * 248.98590 * 4 3 2 7 7 C 1.54247 * 87.19136 * 220.75396 * 6 4 3 8 8 H 1.09004 * 113.75215 * 139.21480 * 7 6 4 9 9 N 1.46495 * 113.66129 * 270.26554 * 7 6 4 10 10 C 1.46500 * 120.00497 * 37.17603 * 9 7 6 11 11 C 1.34783 * 119.99997 * 217.18346 * 9 7 6 12 12 O 1.21283 * 119.99842 * 359.97438 * 11 9 7 13 13 C 1.50698 * 120.00058 * 179.97438 * 11 9 7 14 14 C 1.52996 * 109.47211 * 179.97438 * 13 11 9 15 15 C 1.50698 * 109.47293 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99954 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99865 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00273 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99832 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47008 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46864 * 119.99863 * 19 17 15 22 22 H 1.48503 * 109.47030 * 239.99987 * 19 17 15 23 23 C 1.52907 * 86.77858 * 24.73120 * 7 6 4 24 24 C 1.52916 * 121.13615 * 100.82380 * 23 7 6 25 25 C 1.53950 * 86.78251 * 100.82129 * 24 23 7 26 26 C 1.52914 * 121.13836 * 209.38392 * 23 7 6 27 27 H 1.09003 * 109.47554 * 300.00179 * 1 2 3 28 28 H 1.08997 * 109.47138 * 60.00224 * 1 2 3 29 29 H 1.08998 * 109.47490 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47554 * 239.99821 * 2 1 3 31 31 H 1.09006 * 109.46976 * 119.99687 * 2 1 3 32 32 H 1.09005 * 113.57551 * 335.30504 * 6 4 3 33 33 H 1.09001 * 113.58133 * 106.09782 * 6 4 3 34 34 H 1.08998 * 109.47113 * 89.99858 * 10 9 7 35 35 H 1.08997 * 109.47505 * 210.00696 * 10 9 7 36 36 H 1.09003 * 109.46818 * 330.00489 * 10 9 7 37 37 H 1.09002 * 109.47444 * 299.99890 * 13 11 9 38 38 H 1.09011 * 109.46902 * 59.99904 * 13 11 9 39 39 H 1.09002 * 109.47037 * 300.00397 * 14 13 11 40 40 H 1.09004 * 109.47299 * 59.99950 * 14 13 11 41 41 H 0.96997 * 119.99683 * 179.97438 * 18 17 15 42 42 H 1.08997 * 113.65977 * 215.29117 * 24 23 7 43 43 H 1.09000 * 113.66072 * 346.34954 * 24 23 7 44 44 H 1.09002 * 113.57610 * 270.13352 * 25 24 23 45 45 H 1.09002 * 113.58039 * 139.33631 * 25 24 23 46 46 H 1.08999 * 113.66109 * 13.65141 * 26 23 7 47 47 H 1.08997 * 113.65871 * 144.70914 * 26 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9279 0.5548 -0.3480 6 6 4.0064 2.0131 1.3170 7 6 4.9832 2.8387 0.4548 8 1 5.1378 3.8549 0.8175 9 7 6.2376 2.1428 0.1578 10 6 6.2322 0.7004 -0.0990 11 6 7.3968 2.8294 0.1209 12 8 7.4013 4.0235 0.3331 13 6 8.6873 2.1134 -0.1841 14 6 9.8433 3.1154 -0.1650 15 6 11.1337 2.3996 -0.4706 16 1 11.1298 1.3362 -0.6591 17 6 12.3196 3.1020 -0.5084 18 7 12.3245 4.3970 -0.2783 19 14 13.9192 2.2145 -0.8865 20 1 13.6448 0.7718 -1.1065 21 1 14.5295 2.7940 -2.1100 22 1 14.8549 2.3724 0.2559 23 6 3.9456 2.7375 -0.6638 24 6 3.0038 3.9009 -0.9763 25 6 3.9412 4.2304 -2.1522 26 6 4.3645 2.7503 -2.1344 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.2994 2.6228 1.8798 33 1 4.4961 1.2569 1.9306 34 1 6.0928 0.5217 -1.1652 35 1 7.1817 0.2709 0.2204 36 1 5.4179 0.2355 0.4568 37 1 8.8616 1.3428 0.5668 38 1 8.6228 1.6523 -1.1698 39 1 9.6689 3.8858 -0.9162 40 1 9.9080 3.5769 0.8204 41 1 13.1588 4.8910 -0.3046 42 1 2.0074 3.5860 -1.2862 43 1 2.9856 4.6688 -0.2030 44 1 4.7458 4.9171 -1.8892 45 1 3.4148 4.5224 -3.0609 46 1 5.4332 2.5991 -2.2862 47 1 3.7504 2.1120 -2.7697 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589708243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:55 Heat of formation + Delta-G solvation = -41.707242 kcal Electronic energy + Delta-G solvation = -24829.249061 eV Core-core repulsion = 21399.661582 eV Total energy + Delta-G solvation = -3429.587479 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30449 -38.79417 -37.40174 -35.60024 -33.56118 -33.13795 -31.23416 -30.65587 -27.35314 -26.03575 -25.72579 -24.78143 -23.82440 -22.94725 -21.77141 -20.74736 -18.82523 -18.06158 -17.43779 -16.68479 -16.13245 -16.02599 -15.75490 -15.52885 -15.12784 -14.63113 -14.42899 -13.65119 -13.44823 -13.30322 -13.07398 -12.80139 -12.51149 -12.32054 -12.28472 -12.23082 -12.18269 -12.03134 -11.89247 -11.76133 -11.23995 -11.12664 -11.07952 -10.95123 -10.58682 -10.47252 -10.32352 -10.10475 -9.95672 -9.61241 -9.38674 -9.16371 -8.98412 -8.41046 -8.31495 -5.96150 -4.00509 3.13753 3.18752 3.32282 3.39465 3.42567 3.48059 4.25292 4.40344 4.46839 4.56036 4.64127 4.73693 4.79067 4.85719 4.93485 5.05119 5.07596 5.12766 5.31476 5.34337 5.38845 5.43206 5.50036 5.54265 5.60129 5.65303 5.68487 5.74343 5.78104 5.83093 5.88459 5.95452 5.99853 6.06640 6.20925 6.22382 6.36895 6.45632 6.76954 6.90044 7.09379 7.71987 7.74833 7.86297 8.07201 8.38352 8.73112 9.08138 9.63047 11.14833 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.028182 B = 0.003132 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.314948 B = 8937.505623 C = 9360.527530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.370 6.370 4 C 0.070 3.930 5 H 0.092 0.908 6 C -0.163 4.163 7 C 0.148 3.852 8 H 0.112 0.888 9 N -0.608 5.608 10 C 0.072 3.928 11 C 0.514 3.486 12 O -0.529 6.529 13 C -0.127 4.127 14 C 0.037 3.963 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.112 4.112 24 C -0.099 4.099 25 C -0.140 4.140 26 C -0.123 4.123 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.464 -9.803 -0.461 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.289 6.289 4 C 0.013 3.987 5 H 0.110 0.890 6 C -0.202 4.202 7 C 0.043 3.957 8 H 0.130 0.870 9 N -0.343 5.343 10 C -0.071 4.071 11 C 0.305 3.695 12 O -0.404 6.404 13 C -0.167 4.167 14 C -0.001 4.001 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.113 4.113 24 C -0.137 4.137 25 C -0.178 4.178 26 C -0.160 4.160 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.426 -8.841 -0.332 25.041 hybrid contribution 1.034 -0.876 -0.204 1.370 sum -22.392 -9.716 -0.536 24.415 Atomic orbital electron populations 1.21735 0.93943 1.02076 1.03052 1.22484 0.95481 0.84386 0.99831 1.87936 1.20749 1.25723 1.94516 1.23849 0.80774 0.97864 0.96233 0.89017 1.23917 0.98440 1.00529 0.97273 1.21376 0.82581 0.97926 0.93849 0.87002 1.47693 1.06181 1.08418 1.71991 1.21922 1.03307 0.81006 1.00863 1.21613 0.85032 0.87799 0.75085 1.90662 1.86467 1.15362 1.47886 1.21891 0.92041 1.00994 1.01726 1.18912 0.89515 0.93141 0.98522 1.21246 0.92076 0.94680 1.48410 0.92594 1.25030 0.99155 0.94829 0.95397 1.70011 1.26765 1.06767 1.49248 0.86544 0.83739 0.79791 0.77936 1.19761 1.21017 1.21013 1.23290 0.97050 0.95639 0.95370 1.22410 0.97482 0.95748 0.98036 1.22842 0.99612 0.96844 0.98465 1.22637 1.01516 0.97124 0.94743 0.91909 0.91937 0.91313 0.93590 0.93564 0.88333 0.90697 0.92780 0.90224 0.91390 0.90253 0.90287 0.95837 0.95844 0.93005 0.89283 0.91448 0.89866 0.91668 0.91046 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.15 0.38 -0.61 16 2 C 0.05 0.43 6.50 37.15 0.24 0.67 16 3 O -0.37 -3.86 9.66 -35.23 -0.34 -4.20 16 4 C 0.07 0.72 3.50 -26.28 -0.09 0.63 16 5 H 0.09 0.85 5.44 -51.93 -0.28 0.57 16 6 C -0.16 -1.76 7.14 -25.59 -0.18 -1.95 16 7 C 0.15 1.99 4.26 -67.33 -0.29 1.70 16 8 H 0.11 1.77 7.24 -51.93 -0.38 1.39 16 9 N -0.61 -8.91 2.54 -173.24 -0.44 -9.35 16 10 C 0.07 0.79 8.68 59.85 0.52 1.31 16 11 C 0.51 10.03 7.67 -10.98 -0.08 9.94 16 12 O -0.53 -12.53 15.47 5.55 0.09 -12.44 16 13 C -0.13 -2.58 4.19 -27.89 -0.12 -2.70 16 14 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 15 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 19 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C -0.11 -1.31 0.83 -154.70 -0.13 -1.43 16 24 C -0.10 -1.11 7.47 -26.28 -0.20 -1.31 16 25 C -0.14 -1.67 8.08 -25.75 -0.21 -1.87 16 26 C -0.12 -1.46 7.70 -26.28 -0.20 -1.67 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.76 7.32 -51.93 -0.38 0.38 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.85 6.44 -51.93 -0.33 0.52 16 36 H 0.07 0.60 4.86 -51.93 -0.25 0.34 16 37 H 0.08 1.47 7.40 -51.93 -0.38 1.09 16 38 H 0.08 1.48 8.11 -51.92 -0.42 1.06 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.09 0.96 7.84 -51.93 -0.41 0.55 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 47 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -33.38 371.18 -8.54 -41.92 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.27 Total: -1.36 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -0.88 Total: -10.06 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.30 Total: -36.11 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.25 Total: -16.64 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.38 -8.54 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.214 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds