Wall clock time and date at job start Tue Mar 31 2020 07:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42899 * 109.47281 * 2 1 4 4 C 1.42901 * 114.00064 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.88498 * 20.33210 * 4 3 2 6 6 C 1.53952 * 113.66468 * 248.98590 * 4 3 2 7 7 C 1.54247 * 87.19136 * 220.75396 * 6 4 3 8 8 H 1.09004 * 113.75215 * 139.21480 * 7 6 4 9 9 N 1.46495 * 113.66129 * 270.26554 * 7 6 4 10 10 C 1.46500 * 120.00497 * 37.17603 * 9 7 6 11 11 C 1.34783 * 119.99997 * 217.18346 * 9 7 6 12 12 O 1.21283 * 119.99842 * 359.97438 * 11 9 7 13 13 C 1.50698 * 120.00058 * 179.97438 * 11 9 7 14 14 C 1.52996 * 109.47211 * 179.97438 * 13 11 9 15 15 C 1.50698 * 109.47293 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99954 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99865 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00273 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99832 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47008 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46864 * 119.99863 * 19 17 15 22 22 H 1.48503 * 109.47030 * 239.99987 * 19 17 15 23 23 C 1.52907 * 86.77858 * 24.73120 * 7 6 4 24 24 C 1.52916 * 121.13615 * 100.82380 * 23 7 6 25 25 C 1.53950 * 86.78251 * 100.82129 * 24 23 7 26 26 C 1.52914 * 121.13836 * 209.38392 * 23 7 6 27 27 H 1.09003 * 109.47554 * 300.00179 * 1 2 3 28 28 H 1.08997 * 109.47138 * 60.00224 * 1 2 3 29 29 H 1.08998 * 109.47490 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47554 * 239.99821 * 2 1 3 31 31 H 1.09006 * 109.46976 * 119.99687 * 2 1 3 32 32 H 1.09005 * 113.57551 * 335.30504 * 6 4 3 33 33 H 1.09001 * 113.58133 * 106.09782 * 6 4 3 34 34 H 1.08998 * 109.47113 * 89.99858 * 10 9 7 35 35 H 1.08997 * 109.47505 * 210.00696 * 10 9 7 36 36 H 1.09003 * 109.46818 * 330.00489 * 10 9 7 37 37 H 1.09002 * 109.47444 * 299.99890 * 13 11 9 38 38 H 1.09011 * 109.46902 * 59.99904 * 13 11 9 39 39 H 1.09002 * 109.47037 * 300.00397 * 14 13 11 40 40 H 1.09004 * 109.47299 * 59.99950 * 14 13 11 41 41 H 0.96997 * 119.99683 * 179.97438 * 18 17 15 42 42 H 1.08997 * 113.65977 * 215.29117 * 24 23 7 43 43 H 1.09000 * 113.66072 * 346.34954 * 24 23 7 44 44 H 1.09002 * 113.57610 * 270.13352 * 25 24 23 45 45 H 1.09002 * 113.58039 * 139.33631 * 25 24 23 46 46 H 1.08999 * 113.66109 * 13.65141 * 26 23 7 47 47 H 1.08997 * 113.65871 * 144.70914 * 26 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9279 0.5548 -0.3480 6 6 4.0064 2.0131 1.3170 7 6 4.9832 2.8387 0.4548 8 1 5.1378 3.8549 0.8175 9 7 6.2376 2.1428 0.1578 10 6 6.2322 0.7004 -0.0990 11 6 7.3968 2.8294 0.1209 12 8 7.4013 4.0235 0.3331 13 6 8.6873 2.1134 -0.1841 14 6 9.8433 3.1154 -0.1650 15 6 11.1337 2.3996 -0.4706 16 1 11.1298 1.3362 -0.6591 17 6 12.3196 3.1020 -0.5084 18 7 12.3245 4.3970 -0.2783 19 14 13.9192 2.2145 -0.8865 20 1 13.6448 0.7718 -1.1065 21 1 14.5295 2.7940 -2.1100 22 1 14.8549 2.3724 0.2559 23 6 3.9456 2.7375 -0.6638 24 6 3.0038 3.9009 -0.9763 25 6 3.9412 4.2304 -2.1522 26 6 4.3645 2.7503 -2.1344 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.2994 2.6228 1.8798 33 1 4.4961 1.2569 1.9306 34 1 6.0928 0.5217 -1.1652 35 1 7.1817 0.2709 0.2204 36 1 5.4179 0.2355 0.4568 37 1 8.8616 1.3428 0.5668 38 1 8.6228 1.6523 -1.1698 39 1 9.6689 3.8858 -0.9162 40 1 9.9080 3.5769 0.8204 41 1 13.1588 4.8910 -0.3046 42 1 2.0074 3.5860 -1.2862 43 1 2.9856 4.6688 -0.2030 44 1 4.7458 4.9171 -1.8892 45 1 3.4148 4.5224 -3.0609 46 1 5.4332 2.5991 -2.2862 47 1 3.7504 2.1120 -2.7697 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589708243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:54 Heat of formation + Delta-G solvation = -61.737607 kcal Electronic energy + Delta-G solvation = -24830.117643 eV Core-core repulsion = 21399.661582 eV Total energy + Delta-G solvation = -3430.456061 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.32936 -40.21708 -38.18028 -36.77326 -35.60161 -34.32959 -32.83049 -31.63361 -28.36104 -27.92372 -26.71368 -25.74163 -25.10341 -23.62241 -23.31617 -21.89016 -20.22469 -19.13810 -18.88193 -18.12237 -17.23839 -17.10567 -17.00436 -16.49219 -16.42997 -16.33578 -15.77439 -14.82235 -14.74082 -14.30111 -14.22487 -13.88708 -13.79820 -13.70263 -13.35133 -13.26570 -13.16189 -13.08460 -12.86755 -12.85199 -12.73959 -12.64531 -12.43325 -11.99248 -11.94149 -11.91114 -11.61276 -11.46313 -11.29133 -11.22148 -10.99368 -10.63667 -10.58302 -10.18840 -9.60312 -8.18456 -6.32673 1.41873 1.43504 1.56722 1.65090 1.93275 2.42684 2.75467 3.14653 3.31045 3.49212 3.66058 3.69817 3.81494 3.86481 3.91514 4.18074 4.26133 4.28070 4.40855 4.43982 4.47617 4.48431 4.52508 4.57569 4.66493 4.73058 4.78475 4.83694 4.87233 4.90920 4.94139 4.99455 5.00625 5.07471 5.09834 5.12142 5.33128 5.42412 5.48145 5.49152 5.61405 5.67330 5.84612 6.16667 6.37086 6.39707 6.86053 7.25224 7.37794 8.94572 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.028182 B = 0.003132 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.314948 B = 8937.505623 C = 9360.527530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.384 6.384 4 C 0.086 3.914 5 H 0.111 0.889 6 C -0.152 4.152 7 C 0.131 3.869 8 H 0.076 0.924 9 N -0.593 5.593 10 C 0.060 3.940 11 C 0.511 3.489 12 O -0.588 6.588 13 C -0.113 4.113 14 C 0.043 3.957 15 C -0.540 4.540 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.939 5.939 19 Si 0.975 3.025 20 H -0.251 1.251 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.112 4.112 24 C -0.092 4.092 25 C -0.145 4.145 26 C -0.118 4.118 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.102 0.898 39 H -0.021 1.021 40 H -0.020 1.020 41 H 0.262 0.738 42 H 0.102 0.898 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.081 0.919 46 H 0.050 0.950 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.651 -13.719 -1.060 28.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.303 6.303 4 C 0.028 3.972 5 H 0.128 0.872 6 C -0.190 4.190 7 C 0.026 3.974 8 H 0.095 0.905 9 N -0.325 5.325 10 C -0.081 4.081 11 C 0.302 3.698 12 O -0.467 6.467 13 C -0.153 4.153 14 C 0.006 3.994 15 C -0.578 4.578 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.798 3.202 20 H -0.174 1.174 21 H -0.207 1.207 22 H -0.206 1.206 23 C -0.113 4.113 24 C -0.130 4.130 25 C -0.183 4.183 26 C -0.156 4.156 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.120 0.880 39 H -0.002 1.002 40 H -0.001 1.001 41 H 0.071 0.929 42 H 0.120 0.880 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.671 -12.827 -0.935 27.822 hybrid contribution 1.305 0.374 -0.011 1.357 sum -23.367 -12.453 -0.946 26.495 Atomic orbital electron populations 1.21751 0.93231 1.03154 1.02543 1.22707 0.96129 0.83224 1.00828 1.87925 1.20343 1.27569 1.94487 1.23683 0.81273 0.97425 0.94831 0.87187 1.23859 0.97328 1.00185 0.97620 1.21491 0.82731 0.96944 0.96247 0.90535 1.47549 1.05064 1.09958 1.69906 1.22293 1.05040 0.78161 1.02600 1.21431 0.86303 0.87070 0.75020 1.90643 1.87386 1.17768 1.50952 1.21639 0.90174 0.99545 1.03911 1.18687 0.92592 0.93598 0.94568 1.21729 0.92529 0.95714 1.47818 0.90460 1.26165 1.03840 0.95573 0.95000 1.70195 1.28030 1.09019 1.50645 0.85263 0.78005 0.79323 0.77583 1.17409 1.20696 1.20644 1.23231 0.96419 0.96956 0.94709 1.22381 0.97766 0.95469 0.97394 1.22809 0.99183 0.96675 0.99598 1.22638 1.00561 0.97125 0.95245 0.92476 0.92403 0.89471 0.92490 0.92589 0.88185 0.89361 0.91052 0.89510 0.88438 0.87676 0.87980 1.00225 1.00122 0.92885 0.87957 0.92115 0.92860 0.90065 0.93086 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 71.98 0.74 -0.80 16 2 C 0.05 0.58 6.50 71.98 0.47 1.04 16 3 O -0.38 -6.80 9.66 -148.98 -1.44 -8.24 16 4 C 0.09 1.50 3.50 30.89 0.11 1.61 16 5 H 0.11 1.54 5.44 -2.39 -0.01 1.52 16 6 C -0.15 -2.98 7.14 31.34 0.22 -2.76 16 7 C 0.13 3.52 4.26 45.38 0.19 3.71 16 8 H 0.08 2.61 7.24 -2.39 -0.02 2.60 16 9 N -0.59 -16.98 2.54 -820.40 -2.09 -19.07 16 10 C 0.06 1.12 8.68 127.77 1.11 2.23 16 11 C 0.51 20.59 7.67 87.66 0.67 21.26 16 12 O -0.59 -30.02 15.47 -3.04 -0.05 -30.07 16 13 C -0.11 -4.62 4.19 29.85 0.13 -4.49 16 14 C 0.04 2.44 4.26 29.85 0.13 2.57 16 15 C -0.54 -30.89 9.11 25.60 0.23 -30.65 16 16 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 17 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 18 N -0.94 -60.23 13.29 21.45 0.28 -59.95 16 19 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 20 H -0.25 -10.45 7.11 99.48 0.71 -9.75 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 C -0.11 -2.48 0.83 -52.31 -0.04 -2.52 16 24 C -0.09 -2.02 7.47 30.89 0.23 -1.79 16 25 C -0.15 -3.49 8.08 31.23 0.25 -3.24 16 26 C -0.12 -2.68 7.70 30.89 0.24 -2.45 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 32 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.09 1.52 7.32 -2.39 -0.02 1.51 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.54 6.44 -2.39 -0.02 1.52 16 36 H 0.10 1.27 4.86 -2.39 -0.01 1.26 16 37 H 0.11 3.73 7.40 -2.39 -0.02 3.71 16 38 H 0.10 3.68 8.11 -2.38 -0.02 3.66 16 39 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 40 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 16 41 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 42 H 0.10 2.00 7.84 -2.39 -0.02 1.98 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.05 1.37 7.75 -2.39 -0.02 1.35 16 47 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -77.64 371.18 4.81 -72.83 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.93 Total: 14.34 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 5.14 Total: -16.32 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -1.80 Total: -79.01 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -1.49 Total: -38.31 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -77.64 4.81 -72.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.097 kcal (2) G-P(sol) polarization free energy of solvation -77.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds