Wall clock time and date at job start Tue Mar 31 2020 07:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46892 * 2 1 4 4 C 1.42899 * 113.99823 * 180.02562 * 3 2 1 5 5 H 1.09005 * 112.88496 * 18.65015 * 4 3 2 6 6 C 1.54147 * 113.57771 * 247.18529 * 4 3 2 7 7 C 1.53954 * 87.22514 * 270.18049 * 6 4 3 8 8 H 1.08996 * 113.66531 * 220.83245 * 7 6 4 9 9 N 1.46504 * 113.66208 * 89.85982 * 7 6 4 10 10 C 1.46491 * 120.00202 * 1.79157 * 9 7 6 11 11 C 1.34778 * 119.99845 * 181.78892 * 9 7 6 12 12 O 1.21287 * 120.00028 * 4.99382 * 11 9 7 13 13 C 1.50693 * 119.99990 * 184.99379 * 11 9 7 14 14 C 1.53003 * 109.47261 * 179.97438 * 13 11 9 15 15 C 1.50697 * 109.47110 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00286 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99624 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99294 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00346 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.46856 * 89.99718 * 19 17 15 21 21 H 1.48494 * 109.47084 * 209.99759 * 19 17 15 22 22 H 1.48500 * 109.46936 * 330.00039 * 19 17 15 23 23 C 1.52905 * 113.66585 * 149.99864 * 4 3 2 24 24 C 1.52908 * 121.13764 * 215.29494 * 23 4 3 25 25 C 1.53952 * 86.78490 * 100.81806 * 24 23 4 26 26 C 1.52916 * 121.13445 * 323.85341 * 23 4 3 27 27 H 1.09002 * 109.46872 * 299.99666 * 1 2 3 28 28 H 1.09000 * 109.47420 * 59.99851 * 1 2 3 29 29 H 1.09004 * 109.47509 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46932 * 239.99861 * 2 1 3 31 31 H 1.08997 * 109.47120 * 119.99717 * 2 1 3 32 32 H 1.08999 * 113.58472 * 155.61143 * 6 4 3 33 33 H 1.08995 * 113.63916 * 24.75513 * 6 4 3 34 34 H 1.09000 * 109.47192 * 95.31126 * 10 9 7 35 35 H 1.09001 * 109.47518 * 215.31308 * 10 9 7 36 36 H 1.09001 * 109.47139 * 335.31142 * 10 9 7 37 37 H 1.09001 * 109.46863 * 299.99575 * 13 11 9 38 38 H 1.08997 * 109.47354 * 60.00116 * 13 11 9 39 39 H 1.09001 * 109.47121 * 300.00416 * 14 13 11 40 40 H 1.09004 * 109.47061 * 59.99824 * 14 13 11 41 41 H 0.97011 * 119.99791 * 180.02562 * 18 17 15 42 42 H 1.09001 * 113.65903 * 215.29051 * 24 23 4 43 43 H 1.08994 * 113.66168 * 346.33872 * 24 23 4 44 44 H 1.08994 * 113.57738 * 270.13046 * 25 24 23 45 45 H 1.09000 * 113.57920 * 139.33517 * 25 24 23 46 46 H 1.09001 * 113.66266 * 13.65193 * 26 23 4 47 47 H 1.09006 * 113.66113 * 144.61400 * 26 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.9284 0.5451 -0.3221 6 6 4.0028 2.0547 1.3015 7 6 3.8584 3.4395 0.6443 8 1 4.6987 4.1059 0.8390 9 7 2.5602 4.0733 0.8876 10 6 1.5630 3.4025 1.7251 11 6 2.2834 5.2737 0.3408 12 8 3.0713 5.7875 -0.4249 13 6 0.9949 5.9774 0.6807 14 6 0.9291 7.3104 -0.0674 15 6 -0.3597 8.0138 0.2721 16 1 -1.0614 7.5561 0.9535 17 6 -0.6424 9.2423 -0.2866 18 7 -1.7669 9.8563 0.0101 19 14 0.5716 10.0343 -1.4648 20 1 0.2626 9.6092 -2.8538 21 1 0.4665 11.5121 -1.3644 22 1 1.9508 9.6110 -1.1129 23 6 3.9466 2.7177 -0.7009 24 6 5.2476 2.6983 -1.5040 25 6 4.3673 2.6040 -2.7635 26 6 3.2494 3.2731 -1.9433 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.0369 1.7691 1.4940 33 1 3.3560 1.9136 2.1674 34 1 1.6378 3.7739 2.7472 35 1 0.5653 3.6067 1.3365 36 1 1.7438 2.3276 1.7150 37 1 0.1514 5.3530 0.3862 38 1 0.9536 6.1613 1.7542 39 1 1.7727 7.9345 0.2274 40 1 0.9706 7.1270 -1.1411 41 1 -1.9661 10.7204 -0.3833 42 1 5.8171 3.6253 -1.4367 43 1 5.8568 1.8116 -1.3286 44 1 4.1379 1.5804 -3.0594 45 1 4.7252 3.2147 -3.5923 46 1 2.2622 2.8456 -2.1189 47 1 3.2558 4.3618 -1.9987 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589708245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:00 Heat of formation + Delta-G solvation = -32.250891 kcal Electronic energy + Delta-G solvation = -25585.969582 eV Core-core repulsion = 22156.792160 eV Total energy + Delta-G solvation = -3429.177421 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.28918 -38.65218 -37.39612 -35.56438 -33.47694 -33.05382 -31.21265 -30.83986 -27.06667 -26.37270 -25.57781 -24.55337 -24.13514 -22.99931 -21.53704 -20.40521 -18.82907 -17.97316 -17.16353 -16.83873 -16.26834 -16.09197 -15.88818 -15.29903 -15.21439 -14.67527 -14.02325 -13.76199 -13.35208 -13.16168 -13.05465 -12.84520 -12.64053 -12.48972 -12.40811 -12.35863 -12.03185 -11.84771 -11.72414 -11.53345 -11.28311 -11.15676 -10.95183 -10.82954 -10.33376 -10.24952 -10.15849 -10.02812 -9.91046 -9.71182 -9.41860 -9.12475 -8.97895 -8.45297 -8.14518 -5.97630 -3.95493 3.13569 3.25254 3.41985 3.46739 3.48409 3.59970 4.33340 4.37126 4.54287 4.56119 4.70065 4.74673 4.83616 4.88136 5.00429 5.11525 5.12215 5.33865 5.37968 5.38626 5.41263 5.51744 5.54038 5.59916 5.63788 5.69609 5.74264 5.79586 5.91751 5.92024 5.94053 5.99741 6.09630 6.19866 6.25831 6.28507 6.43403 6.65120 6.78597 6.93583 7.10339 7.45308 7.52530 7.81600 7.89637 8.57174 8.81069 9.06335 9.65975 11.15375 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.004376 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.330172 B = 6396.357249 C = 7071.135294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.349 6.349 4 C 0.092 3.908 5 H 0.071 0.929 6 C -0.167 4.167 7 C 0.148 3.852 8 H 0.083 0.917 9 N -0.598 5.598 10 C 0.077 3.923 11 C 0.515 3.485 12 O -0.539 6.539 13 C -0.118 4.118 14 C 0.003 3.997 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.069 3.931 18 N -0.905 5.905 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.261 1.261 23 C -0.117 4.117 24 C -0.103 4.103 25 C -0.142 4.142 26 C -0.118 4.118 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.022 0.978 40 H 0.018 0.982 41 H 0.262 0.738 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.580 -23.845 1.459 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.268 6.268 4 C 0.033 3.967 5 H 0.089 0.911 6 C -0.205 4.205 7 C 0.043 3.957 8 H 0.100 0.900 9 N -0.332 5.332 10 C -0.066 4.066 11 C 0.306 3.694 12 O -0.416 6.416 13 C -0.158 4.158 14 C -0.035 4.035 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.544 5.544 19 Si 0.704 3.296 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.185 1.185 23 C -0.119 4.119 24 C -0.141 4.141 25 C -0.179 4.179 26 C -0.155 4.155 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.040 0.960 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.750 -23.238 1.030 26.060 hybrid contribution 0.578 0.138 -0.510 0.783 sum 12.328 -23.101 0.520 26.190 Atomic orbital electron populations 1.21746 0.93491 1.02117 1.03556 1.22538 0.95769 0.84101 0.99754 1.88017 1.19182 1.25633 1.93981 1.22729 0.81868 0.96614 0.95475 0.91069 1.23891 1.02077 0.96221 0.98263 1.21510 0.86889 0.92716 0.94554 0.89955 1.47525 1.14807 1.19584 1.51282 1.21945 0.92106 0.99219 0.93355 1.21403 0.89280 0.79631 0.79133 1.90585 1.50444 1.65770 1.34823 1.21657 0.92774 0.98945 1.02439 1.19361 0.97575 0.91052 0.95538 1.21133 1.03061 1.03574 1.28208 0.91009 1.24965 0.95088 0.96919 0.96259 1.69921 1.23884 1.15961 1.44674 0.86802 0.82995 0.78080 0.81717 1.20285 1.21520 1.18522 1.23133 0.98274 0.95776 0.94717 1.22514 0.94284 1.02069 0.95228 1.22844 0.97840 1.00516 0.96740 1.22687 0.97309 1.02275 0.93210 0.91617 0.91655 0.91301 0.93619 0.93554 0.88395 0.89622 0.93829 0.91281 0.89253 0.89863 0.89932 0.95953 0.96380 0.92807 0.89232 0.91734 0.90984 0.91573 0.91654 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.05 0.45 6.50 37.16 0.24 0.69 16 3 O -0.35 -3.80 6.66 -35.23 -0.23 -4.04 16 4 C 0.09 0.92 4.18 -26.18 -0.11 0.81 16 5 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 6 C -0.17 -1.58 7.19 -25.64 -0.18 -1.76 16 7 C 0.15 1.95 3.78 -67.47 -0.26 1.70 16 8 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 9 N -0.60 -9.11 2.79 -173.42 -0.48 -9.59 16 10 C 0.08 0.95 8.51 59.84 0.51 1.46 16 11 C 0.51 10.01 7.06 -10.99 -0.08 9.93 16 12 O -0.54 -12.09 13.64 5.55 0.08 -12.02 16 13 C -0.12 -2.46 4.37 -27.88 -0.12 -2.58 16 14 C 0.00 0.07 3.33 -27.88 -0.09 -0.02 16 15 C -0.52 -15.31 9.66 -34.44 -0.33 -15.64 16 16 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 17 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 18 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 19 Si 0.88 23.09 27.47 -169.99 -4.67 18.42 16 20 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 22 H -0.26 -6.85 6.54 56.52 0.37 -6.48 16 23 C -0.12 -1.43 0.89 -154.70 -0.14 -1.57 16 24 C -0.10 -1.10 7.84 -26.28 -0.21 -1.31 16 25 C -0.14 -1.63 8.08 -25.75 -0.21 -1.84 16 26 C -0.12 -1.72 6.82 -26.28 -0.18 -1.89 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.78 6.09 -51.93 -0.32 0.46 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.90 6.71 -51.93 -0.35 0.55 16 36 H 0.09 0.97 3.77 -51.93 -0.20 0.77 16 37 H 0.08 1.64 7.29 -51.93 -0.38 1.26 16 38 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 40 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 41 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 1.01 7.83 -51.93 -0.41 0.60 16 47 H 0.10 1.89 5.78 -51.93 -0.30 1.59 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -33.81 361.39 -8.16 -41.97 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -8.20 Total: -1.59 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -0.87 Total: -10.84 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.29 Total: -37.35 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.16 Total: -16.06 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.67 Total: 18.42 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.81 -8.16 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.723 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds