Wall clock time and date at job start Tue Mar 31 2020 07:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46892 * 2 1 4 4 C 1.42899 * 113.99823 * 180.02562 * 3 2 1 5 5 H 1.09005 * 112.88496 * 18.65015 * 4 3 2 6 6 C 1.54147 * 113.57771 * 247.18529 * 4 3 2 7 7 C 1.53954 * 87.22514 * 270.18049 * 6 4 3 8 8 H 1.08996 * 113.66531 * 220.83245 * 7 6 4 9 9 N 1.46504 * 113.66208 * 89.85982 * 7 6 4 10 10 C 1.46491 * 120.00202 * 1.79157 * 9 7 6 11 11 C 1.34778 * 119.99845 * 181.78892 * 9 7 6 12 12 O 1.21287 * 120.00028 * 4.99382 * 11 9 7 13 13 C 1.50693 * 119.99990 * 184.99379 * 11 9 7 14 14 C 1.53003 * 109.47261 * 179.97438 * 13 11 9 15 15 C 1.50697 * 109.47110 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00286 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99624 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99294 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00346 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.46856 * 89.99718 * 19 17 15 21 21 H 1.48494 * 109.47084 * 209.99759 * 19 17 15 22 22 H 1.48500 * 109.46936 * 330.00039 * 19 17 15 23 23 C 1.52905 * 113.66585 * 149.99864 * 4 3 2 24 24 C 1.52908 * 121.13764 * 215.29494 * 23 4 3 25 25 C 1.53952 * 86.78490 * 100.81806 * 24 23 4 26 26 C 1.52916 * 121.13445 * 323.85341 * 23 4 3 27 27 H 1.09002 * 109.46872 * 299.99666 * 1 2 3 28 28 H 1.09000 * 109.47420 * 59.99851 * 1 2 3 29 29 H 1.09004 * 109.47509 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46932 * 239.99861 * 2 1 3 31 31 H 1.08997 * 109.47120 * 119.99717 * 2 1 3 32 32 H 1.08999 * 113.58472 * 155.61143 * 6 4 3 33 33 H 1.08995 * 113.63916 * 24.75513 * 6 4 3 34 34 H 1.09000 * 109.47192 * 95.31126 * 10 9 7 35 35 H 1.09001 * 109.47518 * 215.31308 * 10 9 7 36 36 H 1.09001 * 109.47139 * 335.31142 * 10 9 7 37 37 H 1.09001 * 109.46863 * 299.99575 * 13 11 9 38 38 H 1.08997 * 109.47354 * 60.00116 * 13 11 9 39 39 H 1.09001 * 109.47121 * 300.00416 * 14 13 11 40 40 H 1.09004 * 109.47061 * 59.99824 * 14 13 11 41 41 H 0.97011 * 119.99791 * 180.02562 * 18 17 15 42 42 H 1.09001 * 113.65903 * 215.29051 * 24 23 4 43 43 H 1.08994 * 113.66168 * 346.33872 * 24 23 4 44 44 H 1.08994 * 113.57738 * 270.13046 * 25 24 23 45 45 H 1.09000 * 113.57920 * 139.33517 * 25 24 23 46 46 H 1.09001 * 113.66266 * 13.65193 * 26 23 4 47 47 H 1.09006 * 113.66113 * 144.61400 * 26 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.9284 0.5451 -0.3221 6 6 4.0028 2.0547 1.3015 7 6 3.8584 3.4395 0.6443 8 1 4.6987 4.1059 0.8390 9 7 2.5602 4.0733 0.8876 10 6 1.5630 3.4025 1.7251 11 6 2.2834 5.2737 0.3408 12 8 3.0713 5.7875 -0.4249 13 6 0.9949 5.9774 0.6807 14 6 0.9291 7.3104 -0.0674 15 6 -0.3597 8.0138 0.2721 16 1 -1.0614 7.5561 0.9535 17 6 -0.6424 9.2423 -0.2866 18 7 -1.7669 9.8563 0.0101 19 14 0.5716 10.0343 -1.4648 20 1 0.2626 9.6092 -2.8538 21 1 0.4665 11.5121 -1.3644 22 1 1.9508 9.6110 -1.1129 23 6 3.9466 2.7177 -0.7009 24 6 5.2476 2.6983 -1.5040 25 6 4.3673 2.6040 -2.7635 26 6 3.2494 3.2731 -1.9433 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.0369 1.7691 1.4940 33 1 3.3560 1.9136 2.1674 34 1 1.6378 3.7739 2.7472 35 1 0.5653 3.6067 1.3365 36 1 1.7438 2.3276 1.7150 37 1 0.1514 5.3530 0.3862 38 1 0.9536 6.1613 1.7542 39 1 1.7727 7.9345 0.2274 40 1 0.9706 7.1270 -1.1411 41 1 -1.9661 10.7204 -0.3833 42 1 5.8171 3.6253 -1.4367 43 1 5.8568 1.8116 -1.3286 44 1 4.1379 1.5804 -3.0594 45 1 4.7252 3.2147 -3.5923 46 1 2.2622 2.8456 -2.1189 47 1 3.2558 4.3618 -1.9987 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589708245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:00 Heat of formation + Delta-G solvation = -52.746322 kcal Electronic energy + Delta-G solvation = -25586.858330 eV Core-core repulsion = 22156.792160 eV Total energy + Delta-G solvation = -3430.066170 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.27438 -40.05200 -38.18919 -36.70655 -35.56888 -34.23945 -33.13310 -31.62787 -28.31305 -28.08557 -26.55963 -25.50865 -25.26013 -23.63584 -23.17312 -21.66574 -20.18947 -19.20464 -18.91206 -17.94629 -17.55399 -17.07949 -16.93907 -16.50807 -16.30887 -16.16901 -15.82113 -14.92128 -14.70384 -14.49766 -14.36567 -13.97991 -13.82301 -13.73370 -13.50144 -13.26202 -13.20961 -13.10642 -12.89042 -12.71054 -12.55721 -12.36648 -12.08415 -11.99395 -11.91784 -11.76710 -11.76009 -11.41121 -11.24190 -11.22353 -10.95874 -10.79865 -10.58740 -10.18350 -9.36440 -8.33408 -6.36068 1.30707 1.31999 1.48077 1.72611 2.07493 2.33246 2.60023 3.02019 3.45958 3.52257 3.63811 3.83183 3.84302 3.96946 4.03527 4.25122 4.27436 4.36295 4.36969 4.41683 4.50190 4.52736 4.57620 4.64935 4.74678 4.77684 4.83187 4.87487 4.92119 4.95737 4.98851 5.02960 5.06443 5.10271 5.16190 5.20236 5.30857 5.34240 5.42136 5.43726 5.57939 5.61853 5.80758 6.22150 6.41428 6.50940 6.69405 7.29081 7.34134 8.82476 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.004376 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.330172 B = 6396.357249 C = 7071.135294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.374 6.374 4 C 0.098 3.902 5 H 0.100 0.900 6 C -0.145 4.145 7 C 0.123 3.877 8 H 0.066 0.934 9 N -0.586 5.586 10 C 0.072 3.928 11 C 0.512 3.488 12 O -0.578 6.578 13 C -0.112 4.112 14 C 0.011 3.989 15 C -0.529 4.529 16 H 0.048 0.952 17 C 0.016 3.984 18 N -0.942 5.942 19 Si 0.938 3.062 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.264 1.264 23 C -0.120 4.120 24 C -0.093 4.093 25 C -0.132 4.132 26 C -0.131 4.131 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.008 0.992 40 H 0.005 0.995 41 H 0.268 0.732 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.408 -26.786 1.965 30.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.294 6.294 4 C 0.040 3.960 5 H 0.118 0.882 6 C -0.182 4.182 7 C 0.019 3.981 8 H 0.084 0.916 9 N -0.318 5.318 10 C -0.069 4.069 11 C 0.302 3.698 12 O -0.458 6.458 13 C -0.151 4.151 14 C -0.027 4.027 15 C -0.567 4.567 16 H 0.067 0.933 17 C -0.181 4.181 18 N -0.583 5.583 19 Si 0.762 3.238 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.188 1.188 23 C -0.121 4.121 24 C -0.130 4.130 25 C -0.170 4.170 26 C -0.169 4.169 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.027 0.973 40 H 0.023 0.977 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.570 -26.225 1.564 29.569 hybrid contribution -0.081 1.015 -0.632 1.198 sum 13.489 -25.210 0.932 28.607 Atomic orbital electron populations 1.21767 0.93759 1.03054 1.02330 1.22693 0.95577 0.83015 1.01094 1.87990 1.19787 1.27552 1.94047 1.22740 0.81795 0.96498 0.94987 0.88220 1.23887 1.04017 0.92297 0.98044 1.21844 0.85014 0.94323 0.96878 0.91554 1.47439 1.16124 1.18162 1.50036 1.22158 0.90927 1.00466 0.93399 1.21033 0.88365 0.81043 0.79345 1.90573 1.51360 1.67204 1.36671 1.21460 0.94439 0.96877 1.02362 1.19173 0.95095 0.93193 0.95272 1.21405 1.03897 1.03865 1.27523 0.93344 1.25771 0.96764 0.97633 0.97971 1.70023 1.25555 1.16690 1.46029 0.85839 0.80377 0.77796 0.79765 1.19424 1.19980 1.18812 1.23284 0.98679 0.96990 0.93155 1.22443 0.93811 1.02932 0.93857 1.22830 0.96352 1.01038 0.96759 1.22560 0.97715 0.99798 0.96802 0.92104 0.93603 0.89311 0.92885 0.91436 0.85463 0.88715 0.92313 0.92164 0.86923 0.89092 0.88786 0.97316 0.97699 0.92311 0.90634 0.88296 0.88923 0.92065 0.93408 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 71.98 0.74 -1.33 16 2 C 0.05 0.68 6.50 71.98 0.47 1.15 16 3 O -0.37 -7.18 6.66 -148.98 -0.99 -8.18 16 4 C 0.10 1.61 4.18 30.95 0.13 1.74 16 5 H 0.10 1.14 7.87 -2.38 -0.02 1.12 16 6 C -0.15 -2.16 7.19 31.30 0.23 -1.94 16 7 C 0.12 3.08 3.78 45.28 0.17 3.25 16 8 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 9 N -0.59 -17.54 2.79 -820.96 -2.29 -19.83 16 10 C 0.07 1.68 8.51 127.77 1.09 2.77 16 11 C 0.51 20.39 7.06 87.65 0.62 21.01 16 12 O -0.58 -27.01 13.64 -3.05 -0.04 -27.06 16 13 C -0.11 -4.74 4.37 29.85 0.13 -4.61 16 14 C 0.01 0.56 3.33 29.85 0.10 0.66 16 15 C -0.53 -31.91 9.66 25.60 0.25 -31.66 16 16 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 17 C 0.02 1.00 5.47 84.66 0.46 1.47 16 18 N -0.94 -60.39 13.96 21.45 0.30 -60.09 16 19 Si 0.94 48.44 27.47 68.60 1.88 50.32 16 20 H -0.27 -13.47 7.11 99.48 0.71 -12.76 16 21 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.26 -13.65 6.54 99.48 0.65 -13.00 16 23 C -0.12 -2.72 0.89 -52.31 -0.05 -2.77 16 24 C -0.09 -1.78 7.84 30.89 0.24 -1.53 16 25 C -0.13 -2.87 8.08 31.23 0.25 -2.62 16 26 C -0.13 -3.90 6.82 30.89 0.21 -3.69 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.29 6.09 -2.39 -0.01 1.27 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.52 6.71 -2.39 -0.02 1.51 16 36 H 0.11 2.12 3.77 -2.39 -0.01 2.11 16 37 H 0.09 3.67 7.29 -2.39 -0.02 3.66 16 38 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 39 H 0.01 0.47 7.16 -2.39 -0.02 0.45 16 40 H 0.00 0.26 7.53 -2.38 -0.02 0.24 16 41 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.05 1.52 7.83 -2.39 -0.02 1.51 16 47 H 0.06 2.34 5.78 -2.38 -0.01 2.33 16 Total: -1.00 -76.32 361.39 4.77 -71.55 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.87 Total: 11.37 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 5.04 Total: -18.09 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -1.99 Total: -79.92 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -1.03 Total: -35.23 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 1.88 Total: 50.32 kcal Total: -76.32 4.77 -71.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.804 kcal (2) G-P(sol) polarization free energy of solvation -76.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds