Wall clock time and date at job start Tue Mar 31 2020 07:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47039 * 2 1 4 4 C 1.42894 * 114.00284 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.88741 * 341.34031 * 4 3 2 6 6 C 1.53954 * 113.66582 * 112.81361 * 4 3 2 7 7 C 1.53946 * 87.29653 * 89.73733 * 6 4 3 8 8 H 1.09003 * 113.66324 * 270.26560 * 7 6 4 9 9 N 1.46495 * 113.66285 * 139.20646 * 7 6 4 10 10 C 1.46504 * 120.00196 * 143.26347 * 9 7 6 11 11 C 1.34774 * 120.00121 * 323.26730 * 9 7 6 12 12 O 1.21281 * 120.00057 * 4.72054 * 11 9 7 13 13 C 1.50705 * 120.00221 * 184.72663 * 11 9 7 14 14 C 1.53000 * 109.47062 * 179.97438 * 13 11 9 15 15 C 1.50705 * 109.47062 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99839 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99886 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99969 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00078 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46973 * 59.99924 * 19 17 15 21 21 H 1.48496 * 109.47539 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47279 * 300.00468 * 19 17 15 23 23 C 1.52909 * 113.66185 * 210.00033 * 4 3 2 24 24 C 1.52906 * 121.13902 * 144.70807 * 23 4 3 25 25 C 1.53950 * 86.78475 * 209.37942 * 24 23 4 26 26 C 1.52908 * 121.13915 * 36.14426 * 23 4 3 27 27 H 1.09006 * 109.46624 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47128 * 299.99807 * 1 2 3 29 29 H 1.08995 * 109.47384 * 60.00153 * 1 2 3 30 30 H 1.09000 * 109.47128 * 240.00193 * 2 1 3 31 31 H 1.08995 * 109.47384 * 119.99847 * 2 1 3 32 32 H 1.09002 * 113.57702 * 204.34353 * 6 4 3 33 33 H 1.09000 * 113.57218 * 335.13132 * 6 4 3 34 34 H 1.09000 * 109.46921 * 95.17674 * 10 9 7 35 35 H 1.09004 * 109.47138 * 215.17774 * 10 9 7 36 36 H 1.09001 * 109.46737 * 335.17516 * 10 9 7 37 37 H 1.08996 * 109.46714 * 299.99721 * 13 11 9 38 38 H 1.08999 * 109.46901 * 59.99961 * 13 11 9 39 39 H 1.09005 * 109.47155 * 299.99349 * 14 13 11 40 40 H 1.08999 * 109.47522 * 59.99614 * 14 13 11 41 41 H 0.97003 * 119.99743 * 179.97438 * 18 17 15 42 42 H 1.09007 * 113.66401 * 323.85118 * 24 23 4 43 43 H 1.08998 * 113.66654 * 94.90461 * 24 23 4 44 44 H 1.08999 * 113.57741 * 270.13150 * 25 24 23 45 45 H 1.08997 * 113.58307 * 139.33692 * 25 24 23 46 46 H 1.09003 * 113.66062 * 265.08977 * 26 23 4 47 47 H 1.08996 * 113.66204 * 36.14370 * 26 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9287 0.5452 0.3204 6 6 4.0031 2.0543 -1.3005 7 6 3.8578 3.4398 -0.6453 8 1 2.8912 3.9100 -0.8261 9 7 4.9868 4.3356 -0.9078 10 6 4.7540 5.7679 -1.1092 11 6 6.2397 3.8421 -0.9640 12 8 6.4246 2.6462 -0.8828 13 6 7.4109 4.7762 -1.1275 14 6 8.7085 3.9662 -1.1613 15 6 9.8798 4.9004 -1.3242 16 1 9.7151 5.9653 -1.3969 17 6 11.1615 4.3956 -1.3806 18 7 11.3620 3.0988 -1.2916 19 14 12.6133 5.5534 -1.5832 20 1 12.6517 6.5035 -0.4425 21 1 13.8727 4.7673 -1.6159 22 1 12.4696 6.3101 -2.8529 23 6 3.9470 2.7177 0.6997 24 6 5.2487 2.6982 1.5017 25 6 4.6294 3.8091 2.3692 26 6 3.2508 3.2728 1.9428 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 5.0374 1.7688 -1.4920 33 1 3.3568 1.9115 -2.1665 34 1 4.8950 6.2951 -0.1657 35 1 5.4587 6.1502 -1.8478 36 1 3.7353 5.9240 -1.4641 37 1 7.3049 5.3322 -2.0590 38 1 7.4397 5.4730 -0.2898 39 1 8.8143 3.4106 -0.2295 40 1 8.6800 3.2691 -1.9988 41 1 12.2638 2.7437 -1.3316 42 1 5.4170 1.7654 2.0400 43 1 6.1190 3.0226 0.9312 44 1 4.8380 4.8147 2.0040 45 1 4.8315 3.6945 3.4341 46 1 2.5250 4.0563 1.7245 47 1 2.8574 2.5015 2.6049 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589708246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:03 Heat of formation + Delta-G solvation = -24.896626 kcal Electronic energy + Delta-G solvation = -25288.081704 eV Core-core repulsion = 21859.223188 eV Total energy + Delta-G solvation = -3428.858516 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.32366 -38.58501 -37.16854 -35.09215 -33.87737 -33.27889 -31.12144 -30.55823 -26.58969 -26.18787 -25.53748 -24.51164 -24.01419 -22.93123 -21.47716 -20.72664 -18.98128 -18.00681 -16.74950 -16.59956 -16.24590 -15.91787 -15.75426 -15.42323 -14.90325 -14.41450 -14.23371 -13.44239 -13.29231 -13.22355 -13.06314 -12.77104 -12.58459 -12.42782 -12.15980 -12.11961 -12.09818 -11.95530 -11.75309 -11.31142 -11.19246 -11.11550 -10.90383 -10.77295 -10.61351 -10.30687 -10.10601 -9.91415 -9.78087 -9.57607 -9.20306 -9.11157 -8.64317 -8.32097 -8.18990 -5.95866 -4.00021 3.14735 3.33427 3.34410 3.39449 3.41459 3.51359 4.47203 4.54197 4.69689 4.77020 4.86771 4.96757 4.98697 5.04926 5.07658 5.21508 5.24598 5.35996 5.38735 5.39175 5.51802 5.56900 5.63800 5.68217 5.72310 5.79498 5.82654 5.90200 5.93183 5.99950 6.06287 6.17508 6.22050 6.25129 6.43626 6.53917 6.55417 6.64979 6.89020 7.01119 7.31937 7.74273 7.80440 7.86738 8.07175 8.39494 8.76531 9.08114 9.63463 11.14942 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.026217 B = 0.003467 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.771971 B = 8074.919177 C = 8274.113876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.368 6.368 4 C 0.079 3.921 5 H 0.075 0.925 6 C -0.184 4.184 7 C 0.155 3.845 8 H 0.105 0.895 9 N -0.617 5.617 10 C 0.082 3.918 11 C 0.517 3.483 12 O -0.520 6.520 13 C -0.131 4.131 14 C 0.039 3.961 15 C -0.527 4.527 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.103 4.103 24 C -0.121 4.121 25 C -0.141 4.141 26 C -0.114 4.114 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.144 0.856 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.047 -0.473 3.727 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.287 6.287 4 C 0.020 3.980 5 H 0.093 0.907 6 C -0.222 4.222 7 C 0.051 3.949 8 H 0.123 0.877 9 N -0.350 5.350 10 C -0.061 4.061 11 C 0.309 3.691 12 O -0.398 6.398 13 C -0.171 4.171 14 C 0.002 3.998 15 C -0.566 4.566 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.105 4.105 24 C -0.158 4.158 25 C -0.178 4.178 26 C -0.152 4.152 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.161 0.839 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.922 -1.067 3.760 21.284 hybrid contribution 0.791 0.474 -0.107 0.928 sum -20.131 -0.593 3.653 20.468 Atomic orbital electron populations 1.21733 0.93994 1.02013 1.02947 1.22481 0.95213 0.84279 1.00010 1.87834 1.20355 1.25861 1.94660 1.22779 0.80448 0.97541 0.97216 0.90727 1.24480 1.05779 0.95325 0.96573 1.22184 0.89242 0.89493 0.93969 0.87694 1.47907 1.06692 1.08046 1.72385 1.21745 1.01937 0.81038 1.01424 1.21403 0.83526 0.90006 0.74199 1.90442 1.84527 1.16330 1.48476 1.21938 0.94415 0.98623 1.02107 1.18884 0.87878 0.94578 0.98506 1.21184 0.91406 0.93237 1.50726 0.92751 1.25008 0.98951 0.94987 0.95347 1.69985 1.21482 1.11385 1.49973 0.86674 0.81930 0.80825 0.78628 1.20258 1.21302 1.20276 1.23172 0.98282 0.95248 0.93787 1.22970 0.97268 0.98688 0.96886 1.22844 0.96610 0.98992 0.99374 1.22565 0.96117 0.99833 0.96662 0.91323 0.91994 0.91961 0.93472 0.93575 0.83895 0.91983 0.92884 0.90874 0.91587 0.90383 0.90343 0.95831 0.95867 0.92925 0.90579 0.88168 0.90570 0.91963 0.91937 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.82 16 2 C 0.06 0.58 6.50 37.16 0.24 0.82 16 3 O -0.37 -4.70 10.08 -35.23 -0.36 -5.06 16 4 C 0.08 1.08 4.17 -26.28 -0.11 0.97 16 5 H 0.07 1.04 7.87 -51.93 -0.41 0.63 16 6 C -0.18 -2.75 7.16 -25.75 -0.18 -2.94 16 7 C 0.16 2.16 4.26 -67.49 -0.29 1.87 16 8 H 0.11 1.32 7.91 -51.93 -0.41 0.91 16 9 N -0.62 -9.01 2.99 -173.41 -0.52 -9.53 16 10 C 0.08 0.91 10.15 59.85 0.61 1.52 16 11 C 0.52 9.56 5.56 -10.98 -0.06 9.50 16 12 O -0.52 -11.06 10.26 5.56 0.06 -11.00 16 13 C -0.13 -2.62 4.36 -27.88 -0.12 -2.74 16 14 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 15 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.10 -1.44 0.89 -154.71 -0.14 -1.58 16 24 C -0.12 -1.88 6.79 -26.28 -0.18 -2.06 16 25 C -0.14 -1.85 8.08 -25.75 -0.21 -2.06 16 26 C -0.11 -1.41 7.62 -26.28 -0.20 -1.61 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.14 2.59 4.83 -52.68 -0.25 2.34 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.80 6.70 -51.93 -0.35 0.45 16 36 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 37 H 0.08 1.44 7.29 -51.93 -0.38 1.07 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.02 0.67 8.10 -51.93 -0.42 0.24 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 43 H 0.10 1.88 3.98 -51.93 -0.21 1.67 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -31.57 366.68 -8.66 -40.23 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.29 Total: 1.45 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -0.79 Total: -11.73 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.22 Total: -35.98 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.30 Total: -16.06 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.57 -8.66 -40.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.335 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds