Wall clock time and date at job start Tue Mar 31 2020 07:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47039 * 2 1 4 4 C 1.42894 * 114.00284 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.88741 * 341.34031 * 4 3 2 6 6 C 1.53954 * 113.66582 * 112.81361 * 4 3 2 7 7 C 1.53946 * 87.29653 * 89.73733 * 6 4 3 8 8 H 1.09003 * 113.66324 * 270.26560 * 7 6 4 9 9 N 1.46495 * 113.66285 * 139.20646 * 7 6 4 10 10 C 1.46504 * 120.00196 * 143.26347 * 9 7 6 11 11 C 1.34774 * 120.00121 * 323.26730 * 9 7 6 12 12 O 1.21281 * 120.00057 * 4.72054 * 11 9 7 13 13 C 1.50705 * 120.00221 * 184.72663 * 11 9 7 14 14 C 1.53000 * 109.47062 * 179.97438 * 13 11 9 15 15 C 1.50705 * 109.47062 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99839 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99886 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99969 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00078 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46973 * 59.99924 * 19 17 15 21 21 H 1.48496 * 109.47539 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47279 * 300.00468 * 19 17 15 23 23 C 1.52909 * 113.66185 * 210.00033 * 4 3 2 24 24 C 1.52906 * 121.13902 * 144.70807 * 23 4 3 25 25 C 1.53950 * 86.78475 * 209.37942 * 24 23 4 26 26 C 1.52908 * 121.13915 * 36.14426 * 23 4 3 27 27 H 1.09006 * 109.46624 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47128 * 299.99807 * 1 2 3 29 29 H 1.08995 * 109.47384 * 60.00153 * 1 2 3 30 30 H 1.09000 * 109.47128 * 240.00193 * 2 1 3 31 31 H 1.08995 * 109.47384 * 119.99847 * 2 1 3 32 32 H 1.09002 * 113.57702 * 204.34353 * 6 4 3 33 33 H 1.09000 * 113.57218 * 335.13132 * 6 4 3 34 34 H 1.09000 * 109.46921 * 95.17674 * 10 9 7 35 35 H 1.09004 * 109.47138 * 215.17774 * 10 9 7 36 36 H 1.09001 * 109.46737 * 335.17516 * 10 9 7 37 37 H 1.08996 * 109.46714 * 299.99721 * 13 11 9 38 38 H 1.08999 * 109.46901 * 59.99961 * 13 11 9 39 39 H 1.09005 * 109.47155 * 299.99349 * 14 13 11 40 40 H 1.08999 * 109.47522 * 59.99614 * 14 13 11 41 41 H 0.97003 * 119.99743 * 179.97438 * 18 17 15 42 42 H 1.09007 * 113.66401 * 323.85118 * 24 23 4 43 43 H 1.08998 * 113.66654 * 94.90461 * 24 23 4 44 44 H 1.08999 * 113.57741 * 270.13150 * 25 24 23 45 45 H 1.08997 * 113.58307 * 139.33692 * 25 24 23 46 46 H 1.09003 * 113.66062 * 265.08977 * 26 23 4 47 47 H 1.08996 * 113.66204 * 36.14370 * 26 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9287 0.5452 0.3204 6 6 4.0031 2.0543 -1.3005 7 6 3.8578 3.4398 -0.6453 8 1 2.8912 3.9100 -0.8261 9 7 4.9868 4.3356 -0.9078 10 6 4.7540 5.7679 -1.1092 11 6 6.2397 3.8421 -0.9640 12 8 6.4246 2.6462 -0.8828 13 6 7.4109 4.7762 -1.1275 14 6 8.7085 3.9662 -1.1613 15 6 9.8798 4.9004 -1.3242 16 1 9.7151 5.9653 -1.3969 17 6 11.1615 4.3956 -1.3806 18 7 11.3620 3.0988 -1.2916 19 14 12.6133 5.5534 -1.5832 20 1 12.6517 6.5035 -0.4425 21 1 13.8727 4.7673 -1.6159 22 1 12.4696 6.3101 -2.8529 23 6 3.9470 2.7177 0.6997 24 6 5.2487 2.6982 1.5017 25 6 4.6294 3.8091 2.3692 26 6 3.2508 3.2728 1.9428 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 5.0374 1.7688 -1.4920 33 1 3.3568 1.9115 -2.1665 34 1 4.8950 6.2951 -0.1657 35 1 5.4587 6.1502 -1.8478 36 1 3.7353 5.9240 -1.4641 37 1 7.3049 5.3322 -2.0590 38 1 7.4397 5.4730 -0.2898 39 1 8.8143 3.4106 -0.2295 40 1 8.6800 3.2691 -1.9988 41 1 12.2638 2.7437 -1.3316 42 1 5.4170 1.7654 2.0400 43 1 6.1190 3.0226 0.9312 44 1 4.8380 4.8147 2.0040 45 1 4.8315 3.6945 3.4341 46 1 2.5250 4.0563 1.7245 47 1 2.8574 2.5015 2.6049 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589708246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:03 Heat of formation + Delta-G solvation = -43.295198 kcal Electronic energy + Delta-G solvation = -25288.879526 eV Core-core repulsion = 21859.223188 eV Total energy + Delta-G solvation = -3429.656338 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.51776 -39.88406 -38.18937 -36.33112 -35.60870 -34.75238 -32.81885 -31.59862 -28.03071 -27.58442 -26.68652 -25.70440 -25.42079 -23.69672 -23.23624 -21.89837 -20.33637 -19.32747 -18.49479 -17.76357 -17.52020 -17.20804 -17.03933 -16.49910 -16.39209 -15.96125 -15.48268 -14.83628 -14.59606 -14.28986 -14.18740 -14.04625 -14.01208 -13.55994 -13.42749 -13.25849 -13.19523 -13.01002 -12.96675 -12.78391 -12.67639 -12.50568 -12.33969 -12.17658 -11.86823 -11.81576 -11.56263 -11.35295 -11.26053 -11.14313 -10.90879 -10.54400 -10.28425 -10.06467 -9.40371 -8.16943 -6.30509 1.41811 1.45949 1.53587 1.72592 2.12276 2.43808 2.53335 3.16007 3.45094 3.59508 3.66104 3.83054 3.88920 3.95597 4.05109 4.18577 4.21817 4.35687 4.41540 4.48969 4.49819 4.52496 4.53285 4.56742 4.74247 4.77710 4.82371 4.83712 4.88955 4.95799 5.04027 5.07829 5.10337 5.14097 5.18571 5.27216 5.30945 5.45950 5.50990 5.53491 5.66843 5.83611 5.88592 6.19996 6.30587 6.52443 6.88127 7.36979 7.40342 8.95198 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.026217 B = 0.003467 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.771971 B = 8074.919177 C = 8274.113876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 O -0.371 6.371 4 C 0.087 3.913 5 H 0.063 0.937 6 C -0.190 4.190 7 C 0.159 3.841 8 H 0.133 0.867 9 N -0.606 5.606 10 C 0.072 3.928 11 C 0.515 3.485 12 O -0.558 6.558 13 C -0.119 4.119 14 C 0.048 3.952 15 C -0.543 4.543 16 H 0.073 0.927 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.970 3.030 20 H -0.263 1.263 21 H -0.288 1.288 22 H -0.263 1.263 23 C -0.104 4.104 24 C -0.136 4.136 25 C -0.132 4.132 26 C -0.099 4.099 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.096 0.904 39 H -0.017 1.017 40 H -0.018 1.018 41 H 0.262 0.738 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.079 2.026 4.024 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 O -0.290 6.290 4 C 0.028 3.972 5 H 0.081 0.919 6 C -0.228 4.228 7 C 0.056 3.944 8 H 0.150 0.850 9 N -0.337 5.337 10 C -0.070 4.070 11 C 0.306 3.694 12 O -0.438 6.438 13 C -0.158 4.158 14 C 0.011 3.989 15 C -0.581 4.581 16 H 0.091 0.909 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.794 3.206 20 H -0.187 1.187 21 H -0.214 1.214 22 H -0.188 1.188 23 C -0.105 4.105 24 C -0.173 4.173 25 C -0.169 4.169 26 C -0.136 4.136 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.001 0.999 40 H 0.000 1.000 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.098 0.902 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.004 1.474 4.056 23.405 hybrid contribution 1.388 -0.393 -0.213 1.458 sum -21.616 1.082 3.843 21.981 Atomic orbital electron populations 1.21727 0.92047 1.03359 1.02955 1.22720 0.96747 0.83160 1.00250 1.87815 1.19116 1.27480 1.94619 1.22594 0.81230 0.97117 0.96265 0.91876 1.24312 1.03941 0.96888 0.97609 1.22330 0.89666 0.88903 0.93527 0.84963 1.47828 1.05340 1.09836 1.70744 1.22070 1.03962 0.78459 1.02512 1.21061 0.84641 0.89101 0.74562 1.90468 1.85310 1.17746 1.50313 1.21670 0.92138 0.98189 1.03823 1.18627 0.91468 0.94187 0.94631 1.21686 0.92084 0.94274 1.50080 0.90911 1.26090 1.02642 0.96708 0.94803 1.70167 1.22249 1.13904 1.51307 0.85430 0.77304 0.78427 0.79439 1.18742 1.21355 1.18750 1.23117 0.97501 0.95444 0.94470 1.22950 0.97052 0.99450 0.97880 1.22807 0.96708 0.98008 0.99422 1.22488 0.95753 1.00112 0.95240 0.89363 0.91817 0.92047 0.93551 0.93140 0.87337 0.91316 0.91420 0.90612 0.88528 0.88468 0.88610 0.99872 0.99968 0.92923 0.91407 0.91557 0.90344 0.91031 0.90179 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.05 0.91 6.50 71.98 0.47 1.37 16 3 O -0.37 -8.92 10.08 -148.98 -1.50 -10.42 16 4 C 0.09 2.38 4.17 30.89 0.13 2.51 16 5 H 0.06 1.85 7.87 -2.39 -0.02 1.83 16 6 C -0.19 -5.75 7.16 31.23 0.22 -5.53 16 7 C 0.16 4.19 4.26 45.28 0.19 4.38 16 8 H 0.13 2.83 7.91 -2.39 -0.02 2.81 16 9 N -0.61 -16.95 2.99 -820.95 -2.45 -19.40 16 10 C 0.07 1.36 10.15 127.77 1.30 2.66 16 11 C 0.52 19.54 5.56 87.66 0.49 20.03 16 12 O -0.56 -25.42 10.26 -3.03 -0.03 -25.45 16 13 C -0.12 -4.78 4.36 29.85 0.13 -4.65 16 14 C 0.05 2.68 4.26 29.85 0.13 2.81 16 15 C -0.54 -30.97 9.11 25.60 0.23 -30.73 16 16 H 0.07 3.79 7.74 -2.91 -0.02 3.76 16 17 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 18 N -0.94 -59.44 13.29 21.45 0.28 -59.15 16 19 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 23 C -0.10 -2.81 0.89 -52.31 -0.05 -2.85 16 24 C -0.14 -4.34 6.79 30.88 0.21 -4.13 16 25 C -0.13 -3.28 8.08 31.23 0.25 -3.03 16 26 C -0.10 -2.19 7.62 30.88 0.24 -1.95 16 27 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.11 4.20 4.83 -14.24 -0.07 4.13 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.43 6.70 -2.38 -0.02 1.41 16 36 H 0.10 1.29 7.87 -2.39 -0.02 1.27 16 37 H 0.10 3.51 7.29 -2.39 -0.02 3.50 16 38 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 39 H -0.02 -1.07 8.10 -2.38 -0.02 -1.09 16 40 H -0.02 -1.14 8.10 -2.39 -0.02 -1.15 16 41 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 43 H 0.07 2.62 3.98 -2.39 -0.01 2.61 16 44 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -72.48 366.68 4.33 -68.15 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.87 Total: 20.06 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 5.14 Total: -20.20 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -2.17 Total: -78.55 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -1.53 Total: -35.87 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -72.48 4.33 -68.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.852 kcal (2) G-P(sol) polarization free energy of solvation -72.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds