Wall clock time and date at job start Tue Mar 31 2020 07:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.49323 * 2 1 4 4 C 1.53223 * 109.49483 * 239.95119 * 2 1 3 5 5 N 1.47118 * 108.72524 * 185.97402 * 4 2 1 6 6 C 1.34777 * 121.04261 * 232.13045 * 5 4 2 7 7 O 1.21288 * 119.99593 * 179.97438 * 6 5 4 8 8 C 1.50697 * 120.00369 * 359.97438 * 6 5 4 9 9 C 1.53001 * 109.47291 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46886 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46838 * 89.99826 * 16 14 12 18 18 H 1.48497 * 109.47419 * 209.99978 * 16 14 12 19 19 H 1.48499 * 109.47011 * 330.00539 * 16 14 12 20 20 C 1.47318 * 117.91256 * 52.40191 * 5 4 2 21 21 C 1.53378 * 107.82996 * 311.18258 * 20 5 4 22 22 C 1.53348 * 113.43207 * 179.97438 * 21 20 5 23 23 C 1.53862 * 86.96760 * 89.45858 * 22 21 20 24 24 C 1.53378 * 113.57353 * 277.81402 * 21 20 5 25 25 O 1.42590 * 112.70755 * 48.88741 * 21 20 5 26 26 H 1.08998 * 109.47059 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46987 * 300.04976 * 1 2 3 28 28 H 1.08994 * 109.47275 * 60.05157 * 1 2 3 29 29 H 1.09002 * 109.59254 * 66.19602 * 4 2 1 30 30 H 1.09004 * 109.72225 * 305.82393 * 4 2 1 31 31 H 1.09001 * 109.46613 * 59.99889 * 8 6 5 32 32 H 1.09002 * 109.47120 * 300.00240 * 8 6 5 33 33 H 1.09001 * 109.46652 * 60.00253 * 9 8 6 34 34 H 1.08992 * 109.47514 * 300.00342 * 9 8 6 35 35 H 1.09002 * 109.47398 * 300.00496 * 10 9 8 36 36 H 1.09001 * 109.47194 * 60.00677 * 10 9 8 37 37 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 38 38 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 39 39 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 40 40 H 1.08997 * 109.75016 * 70.88411 * 20 5 4 41 41 H 1.09003 * 109.75134 * 191.60683 * 20 5 4 42 42 H 1.08996 * 113.63443 * 203.98054 * 22 21 20 43 43 H 1.09004 * 113.63061 * 334.94595 * 22 21 20 44 44 H 1.09000 * 113.60593 * 270.56375 * 23 22 21 45 45 H 1.08998 * 113.67855 * 139.70759 * 23 22 21 46 46 H 1.08999 * 113.62772 * 25.19072 * 24 21 20 47 47 H 1.08990 * 113.63735 * 156.15384 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0413 -0.7233 -1.2503 5 7 3.5052 -0.8402 -1.1627 6 6 4.2969 -0.4290 -2.1730 7 8 5.5017 -0.5338 -2.0805 8 6 3.6853 0.1611 -3.4175 9 6 4.7949 0.5434 -4.3991 10 6 4.1738 1.1419 -5.6628 11 6 5.2832 1.5236 -6.6448 12 6 4.6716 2.1136 -7.8893 13 1 3.5988 2.2074 -7.9714 14 6 5.4815 2.5348 -8.9225 15 7 6.7879 2.4211 -8.8222 16 14 4.7233 3.2655 -10.4655 17 1 4.5885 4.7354 -10.3023 18 1 5.5960 2.9749 -11.6313 19 1 3.3827 2.6673 -10.6892 20 6 4.0783 -1.4264 0.0613 21 6 3.4291 -0.7301 1.2639 22 6 3.9371 -1.2473 2.6152 23 6 5.0315 -0.1697 2.5239 24 6 4.0737 0.6168 1.6143 25 8 2.0075 -0.6760 1.1672 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5146 0.8895 28 1 -0.3633 0.5130 -0.8904 29 1 1.7726 -0.1518 -2.1387 30 1 1.5979 -1.7174 -1.3073 31 1 3.1116 1.0496 -3.1541 32 1 3.0262 -0.5727 -3.8814 33 1 5.3689 -0.3450 -4.6625 34 1 5.4537 1.2773 -3.9350 35 1 3.5152 0.4076 -6.1268 36 1 3.5994 2.0302 -5.3998 37 1 5.9421 2.2577 -6.1810 38 1 5.8573 0.6352 -6.9078 39 1 7.3578 2.7177 -9.5490 40 1 3.8661 -2.4950 0.0921 41 1 5.1560 -1.2638 0.0780 42 1 3.2361 -1.0898 3.4349 43 1 4.3227 -2.2661 2.5762 44 1 5.9356 -0.5077 2.0174 45 1 5.2381 0.3259 3.4725 46 1 4.5690 1.0968 0.7703 47 1 3.4105 1.2907 2.1566 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592729380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:05 Heat of formation + Delta-G solvation = -80.933182 kcal Electronic energy + Delta-G solvation = -24283.304930 eV Core-core repulsion = 20852.016486 eV Total energy + Delta-G solvation = -3431.288444 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.14172 -39.21289 -37.20291 -35.04740 -34.83772 -32.65511 -32.13948 -30.06387 -28.06795 -26.61825 -26.19867 -25.38245 -23.89532 -22.21727 -21.67300 -20.04714 -19.42530 -18.90168 -17.40543 -17.15138 -16.23200 -16.10930 -16.06427 -15.47506 -15.00831 -14.79998 -14.47634 -14.36360 -13.83109 -13.45208 -13.30587 -12.85639 -12.72332 -12.66159 -12.48029 -12.35583 -12.13552 -11.79244 -11.64441 -11.58792 -11.50681 -11.15478 -11.07110 -10.98895 -10.66649 -10.55091 -10.50656 -10.40755 -10.09325 -9.78768 -9.61733 -9.22841 -8.98536 -8.73794 -8.30491 -5.95258 -3.97830 2.62179 2.69978 3.23682 3.33832 3.39890 3.43020 4.12267 4.15777 4.28591 4.41917 4.47123 4.49316 4.56892 4.65994 4.85413 4.90917 5.06124 5.16133 5.27006 5.29705 5.32103 5.33163 5.36625 5.40043 5.41206 5.50010 5.53991 5.57723 5.66675 5.77143 5.79710 5.83965 5.96381 6.11903 6.16573 6.30158 6.53593 6.82785 6.90474 6.99898 7.17369 7.23466 7.74011 7.89910 8.06063 8.13748 8.47801 9.09889 9.65813 11.16105 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.026429 B = 0.002658 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.194760 B =10529.845740 C =11179.276203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 H 0.065 0.935 4 C 0.078 3.922 5 N -0.623 5.623 6 C 0.517 3.483 7 O -0.532 6.532 8 C -0.137 4.137 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.108 3.892 21 C 0.077 3.923 22 C -0.116 4.116 23 C -0.140 4.140 24 C -0.159 4.159 25 O -0.362 6.362 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.708 -7.427 24.473 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.015 3.985 3 H 0.083 0.917 4 C -0.046 4.046 5 N -0.358 5.358 6 C 0.307 3.693 7 O -0.407 6.407 8 C -0.177 4.177 9 C -0.141 4.141 10 C -0.147 4.147 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.015 4.015 21 C 0.037 3.963 22 C -0.154 4.154 23 C -0.177 4.177 24 C -0.197 4.197 25 O -0.281 6.281 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.994 -7.530 24.527 27.913 hybrid contribution -0.310 0.516 -1.086 1.242 sum -11.304 -7.014 23.440 26.952 Atomic orbital electron populations 1.21743 0.92120 1.03273 1.03033 1.22443 0.95417 0.95694 0.84971 0.91734 1.22471 0.80188 1.02178 0.99750 1.48260 1.06702 1.63367 1.17498 1.21146 0.86954 0.76908 0.84331 1.90700 1.14553 1.54983 1.80496 1.21827 1.01058 1.01514 0.93317 1.21467 0.96099 1.01568 0.94991 1.21647 0.99865 0.98777 0.94447 1.19091 0.93197 0.96588 0.92835 1.21280 0.93003 1.40405 1.01170 0.92762 1.25045 0.94841 0.96087 0.98610 1.69979 1.03031 1.47691 1.32773 0.86611 0.79104 0.79448 0.82918 1.20706 1.21245 1.19920 1.21968 1.00123 0.97025 0.82392 1.23162 0.81082 0.96813 0.95237 1.22965 0.97558 0.99459 0.95391 1.22735 0.97084 0.97429 1.00497 1.23435 0.98978 0.96883 1.00370 1.87948 1.19916 1.77798 1.42441 0.91531 0.91428 0.90530 0.88238 0.90465 0.89198 0.89084 0.91761 0.91797 0.93465 0.93494 0.96610 0.96580 0.93040 0.90770 0.87780 0.88824 0.90452 0.89560 0.90557 0.90995 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.57 37.16 0.36 -0.54 16 2 C 0.07 0.61 3.30 -26.62 -0.09 0.52 16 3 H 0.06 0.57 7.77 -51.93 -0.40 0.17 16 4 C 0.08 0.67 5.79 -3.59 -0.02 0.65 16 5 N -0.62 -7.17 3.02 -172.16 -0.52 -7.69 16 6 C 0.52 7.51 7.71 -10.99 -0.08 7.43 16 7 O -0.53 -9.77 15.47 5.55 0.09 -9.68 16 8 C -0.14 -1.87 4.07 -27.88 -0.11 -1.98 16 9 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 12 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.11 1.15 5.67 -3.40 -0.02 1.13 16 21 C 0.08 0.73 1.25 -90.05 -0.11 0.61 16 22 C -0.12 -0.87 7.50 -26.10 -0.20 -1.07 16 23 C -0.14 -1.07 7.73 -25.90 -0.20 -1.27 16 24 C -0.16 -1.46 6.91 -26.15 -0.18 -1.64 16 25 O -0.36 -3.59 10.16 -35.23 -0.36 -3.95 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 0.74 6.03 -51.93 -0.31 0.43 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 32 H 0.09 1.07 7.99 -51.93 -0.41 0.66 16 33 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 1.23 6.37 -51.93 -0.33 0.90 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 44 H 0.09 0.68 7.68 -51.93 -0.40 0.28 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 47 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -33.67 371.16 -9.51 -43.18 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -8.56 Total: -3.52 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -1.47 Total: -13.96 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.22 Total: -34.57 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.27 Total: -13.63 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.67 -9.51 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592729380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.753 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds