Wall clock time and date at job start Tue Mar 31 2020 07:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.49323 * 2 1 4 4 C 1.53223 * 109.49483 * 239.95119 * 2 1 3 5 5 N 1.47118 * 108.72524 * 185.97402 * 4 2 1 6 6 C 1.34777 * 121.04261 * 232.13045 * 5 4 2 7 7 O 1.21288 * 119.99593 * 179.97438 * 6 5 4 8 8 C 1.50697 * 120.00369 * 359.97438 * 6 5 4 9 9 C 1.53001 * 109.47291 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46886 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46838 * 89.99826 * 16 14 12 18 18 H 1.48497 * 109.47419 * 209.99978 * 16 14 12 19 19 H 1.48499 * 109.47011 * 330.00539 * 16 14 12 20 20 C 1.47318 * 117.91256 * 52.40191 * 5 4 2 21 21 C 1.53378 * 107.82996 * 311.18258 * 20 5 4 22 22 C 1.53348 * 113.43207 * 179.97438 * 21 20 5 23 23 C 1.53862 * 86.96760 * 89.45858 * 22 21 20 24 24 C 1.53378 * 113.57353 * 277.81402 * 21 20 5 25 25 O 1.42590 * 112.70755 * 48.88741 * 21 20 5 26 26 H 1.08998 * 109.47059 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46987 * 300.04976 * 1 2 3 28 28 H 1.08994 * 109.47275 * 60.05157 * 1 2 3 29 29 H 1.09002 * 109.59254 * 66.19602 * 4 2 1 30 30 H 1.09004 * 109.72225 * 305.82393 * 4 2 1 31 31 H 1.09001 * 109.46613 * 59.99889 * 8 6 5 32 32 H 1.09002 * 109.47120 * 300.00240 * 8 6 5 33 33 H 1.09001 * 109.46652 * 60.00253 * 9 8 6 34 34 H 1.08992 * 109.47514 * 300.00342 * 9 8 6 35 35 H 1.09002 * 109.47398 * 300.00496 * 10 9 8 36 36 H 1.09001 * 109.47194 * 60.00677 * 10 9 8 37 37 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 38 38 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 39 39 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 40 40 H 1.08997 * 109.75016 * 70.88411 * 20 5 4 41 41 H 1.09003 * 109.75134 * 191.60683 * 20 5 4 42 42 H 1.08996 * 113.63443 * 203.98054 * 22 21 20 43 43 H 1.09004 * 113.63061 * 334.94595 * 22 21 20 44 44 H 1.09000 * 113.60593 * 270.56375 * 23 22 21 45 45 H 1.08998 * 113.67855 * 139.70759 * 23 22 21 46 46 H 1.08999 * 113.62772 * 25.19072 * 24 21 20 47 47 H 1.08990 * 113.63735 * 156.15384 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0413 -0.7233 -1.2503 5 7 3.5052 -0.8402 -1.1627 6 6 4.2969 -0.4290 -2.1730 7 8 5.5017 -0.5338 -2.0805 8 6 3.6853 0.1611 -3.4175 9 6 4.7949 0.5434 -4.3991 10 6 4.1738 1.1419 -5.6628 11 6 5.2832 1.5236 -6.6448 12 6 4.6716 2.1136 -7.8893 13 1 3.5988 2.2074 -7.9714 14 6 5.4815 2.5348 -8.9225 15 7 6.7879 2.4211 -8.8222 16 14 4.7233 3.2655 -10.4655 17 1 4.5885 4.7354 -10.3023 18 1 5.5960 2.9749 -11.6313 19 1 3.3827 2.6673 -10.6892 20 6 4.0783 -1.4264 0.0613 21 6 3.4291 -0.7301 1.2639 22 6 3.9371 -1.2473 2.6152 23 6 5.0315 -0.1697 2.5239 24 6 4.0737 0.6168 1.6143 25 8 2.0075 -0.6760 1.1672 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5146 0.8895 28 1 -0.3633 0.5130 -0.8904 29 1 1.7726 -0.1518 -2.1387 30 1 1.5979 -1.7174 -1.3073 31 1 3.1116 1.0496 -3.1541 32 1 3.0262 -0.5727 -3.8814 33 1 5.3689 -0.3450 -4.6625 34 1 5.4537 1.2773 -3.9350 35 1 3.5152 0.4076 -6.1268 36 1 3.5994 2.0302 -5.3998 37 1 5.9421 2.2577 -6.1810 38 1 5.8573 0.6352 -6.9078 39 1 7.3578 2.7177 -9.5490 40 1 3.8661 -2.4950 0.0921 41 1 5.1560 -1.2638 0.0780 42 1 3.2361 -1.0898 3.4349 43 1 4.3227 -2.2661 2.5762 44 1 5.9356 -0.5077 2.0174 45 1 5.2381 0.3259 3.4725 46 1 4.5690 1.0968 0.7703 47 1 3.4105 1.2907 2.1566 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592729380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:04 Heat of formation + Delta-G solvation = -100.993153 kcal Electronic energy + Delta-G solvation = -24284.174796 eV Core-core repulsion = 20852.016486 eV Total energy + Delta-G solvation = -3432.158309 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.96412 -40.24359 -37.91611 -36.69048 -35.86376 -34.63579 -32.80861 -31.69703 -29.16393 -27.56439 -26.99465 -26.74896 -24.84084 -23.77657 -22.38696 -21.78554 -20.38755 -19.67943 -18.46748 -18.14097 -18.12984 -17.12561 -17.01451 -16.48797 -16.42597 -15.87179 -15.61302 -15.47582 -14.92928 -14.54532 -14.44038 -14.04742 -13.71721 -13.64549 -13.50795 -13.34764 -13.27057 -13.01647 -12.94062 -12.82586 -12.42525 -12.33622 -12.19675 -12.17924 -12.13486 -11.85562 -11.69749 -11.47888 -11.39704 -11.33006 -11.14255 -10.84771 -10.75401 -10.55297 -9.63310 -8.18961 -6.31204 1.40339 1.42638 1.51528 1.53711 1.77504 2.41784 2.58117 3.13883 3.35199 3.46886 3.56306 3.59544 3.76859 3.84391 3.94964 4.02293 4.09172 4.19279 4.27488 4.31973 4.44967 4.54890 4.61233 4.64245 4.71489 4.73936 4.76434 4.78277 4.85167 4.87818 4.94865 4.98741 5.03079 5.11963 5.15616 5.28755 5.31629 5.34127 5.34167 5.37589 5.55794 5.77143 5.87528 6.19764 6.23497 6.25153 6.87391 7.05272 7.38547 8.93407 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.026429 B = 0.002658 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.194760 B =10529.845740 C =11179.276203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 H 0.057 0.943 4 C 0.071 3.929 5 N -0.616 5.616 6 C 0.513 3.487 7 O -0.583 6.583 8 C -0.127 4.127 9 C -0.095 4.095 10 C -0.094 4.094 11 C 0.019 3.981 12 C -0.541 4.541 13 H 0.067 0.933 14 C -0.007 4.007 15 N -0.939 5.939 16 Si 0.970 3.030 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.258 1.258 20 C 0.104 3.896 21 C 0.076 3.924 22 C -0.107 4.107 23 C -0.136 4.136 24 C -0.161 4.161 25 O -0.370 6.370 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.062 0.938 37 H -0.016 1.016 38 H -0.016 1.016 39 H 0.263 0.737 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.047 0.953 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.876 -7.474 24.830 29.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.012 3.988 3 H 0.075 0.925 4 C -0.051 4.051 5 N -0.350 5.350 6 C 0.304 3.696 7 O -0.463 6.463 8 C -0.166 4.166 9 C -0.133 4.133 10 C -0.132 4.132 11 C -0.018 4.018 12 C -0.579 4.579 13 H 0.085 0.915 14 C -0.204 4.204 15 N -0.579 5.579 16 Si 0.794 3.206 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.182 1.182 20 C -0.019 4.019 21 C 0.035 3.965 22 C -0.145 4.145 23 C -0.174 4.174 24 C -0.198 4.198 25 O -0.289 6.289 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.136 0.864 30 H 0.109 0.891 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.002 0.998 38 H 0.003 0.997 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.066 0.934 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.220 -7.587 24.916 29.675 hybrid contribution 0.697 0.521 -1.155 1.446 sum -13.523 -7.066 23.761 28.238 Atomic orbital electron populations 1.21746 0.90177 1.03795 1.03910 1.22580 0.96840 0.95062 0.84316 0.92481 1.22769 0.78047 1.03444 1.00794 1.48289 1.07926 1.61922 1.16837 1.21283 0.86463 0.76735 0.85146 1.90684 1.16707 1.57320 1.81547 1.21712 0.99575 1.03433 0.91887 1.21248 0.97131 0.99888 0.95042 1.21439 0.97915 0.99898 0.93935 1.19050 0.94416 0.94292 0.94067 1.21755 0.93772 1.40406 1.01970 0.91480 1.26101 0.95247 0.96454 1.02632 1.70138 1.04830 1.48815 1.34134 0.85381 0.78626 0.78768 0.77868 1.19696 1.20988 1.18231 1.22042 0.99359 0.97747 0.82722 1.23179 0.81006 0.96816 0.95470 1.22960 0.97252 0.99881 0.94415 1.22722 0.96690 0.97308 1.00664 1.23435 0.99456 0.96972 0.99970 1.87950 1.19851 1.77954 1.43195 0.91151 0.91447 0.88804 0.86437 0.89083 0.86447 0.86243 0.93854 0.93935 0.91935 0.91960 0.99794 0.99746 0.92859 0.89774 0.89573 0.87913 0.89424 0.90237 0.89128 0.93422 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.57 71.98 0.69 -0.62 16 2 C 0.07 1.02 3.30 30.67 0.10 1.12 16 3 H 0.06 0.92 7.77 -2.39 -0.02 0.90 16 4 C 0.07 1.05 5.79 86.34 0.50 1.55 16 5 N -0.62 -13.52 3.02 -816.98 -2.47 -15.99 16 6 C 0.51 14.77 7.71 87.66 0.68 15.45 16 7 O -0.58 -22.31 15.47 -3.05 -0.05 -22.35 16 8 C -0.13 -3.22 4.07 29.85 0.12 -3.10 16 9 C -0.09 -3.47 4.50 30.59 0.14 -3.33 16 10 C -0.09 -3.84 5.15 30.59 0.16 -3.68 16 11 C 0.02 1.04 4.97 29.85 0.15 1.19 16 12 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 13 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 14 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 15 N -0.94 -59.30 13.29 21.45 0.28 -59.02 16 16 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 20 C 0.10 2.18 5.67 86.35 0.49 2.67 16 21 C 0.08 1.34 1.25 -10.42 -0.01 1.33 16 22 C -0.11 -1.45 7.50 31.00 0.23 -1.22 16 23 C -0.14 -1.99 7.73 31.13 0.24 -1.75 16 24 C -0.16 -2.91 6.91 30.97 0.21 -2.70 16 25 O -0.37 -6.65 10.16 -148.98 -1.51 -8.16 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.12 1.30 6.03 -2.39 -0.01 1.29 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.12 2.37 7.69 -2.39 -0.02 2.35 16 32 H 0.12 2.40 7.99 -2.39 -0.02 2.38 16 33 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 34 H 0.04 1.70 8.10 -2.39 -0.02 1.69 16 35 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.09 2.13 6.37 -2.39 -0.02 2.12 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 43 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 44 H 0.08 1.27 7.68 -2.39 -0.02 1.25 16 45 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 47 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -75.46 371.16 3.59 -71.87 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.91 Total: 11.07 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 4.39 Total: -24.20 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -2.18 Total: -75.00 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -1.56 Total: -30.51 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -75.46 3.59 -71.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592729380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.124 kcal (2) G-P(sol) polarization free energy of solvation -75.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds