Wall clock time and date at job start Tue Mar 31 2020 07:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47017 * 2 1 4 4 C 1.52999 * 109.47322 * 240.00249 * 2 1 3 5 5 C 1.53001 * 109.47042 * 299.99809 * 4 2 1 6 6 C 1.52997 * 109.47152 * 300.00022 * 5 4 2 7 7 C 1.52997 * 109.47319 * 59.99706 * 6 5 4 8 8 C 1.53000 * 109.47500 * 120.00017 * 2 1 3 9 9 H 1.08997 * 109.47341 * 180.02562 * 8 2 1 10 10 C 1.52999 * 109.47022 * 300.00415 * 8 2 1 11 11 C 1.50697 * 109.47301 * 184.99758 * 10 8 2 12 12 O 1.21289 * 119.99700 * 359.97438 * 11 10 8 13 13 N 1.34780 * 120.00483 * 179.97438 * 11 10 8 14 14 C 1.47743 * 125.81887 * 359.90665 * 13 11 10 15 15 C 1.54909 * 104.83995 * 155.82587 * 14 13 11 16 16 C 1.55159 * 101.57990 * 37.09908 * 15 14 13 17 17 O 1.42898 * 110.87348 * 82.92981 * 16 15 14 18 18 C 1.50700 * 110.71873 * 206.13106 * 16 15 14 19 19 H 1.07998 * 119.99901 * 113.51991 * 18 16 15 20 20 C 1.37879 * 120.00056 * 293.51821 * 18 16 15 21 21 N 1.31512 * 119.99872 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 119.99776 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47517 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46780 * 120.00159 * 22 20 18 25 25 H 1.48501 * 109.47285 * 240.00203 * 22 20 18 26 26 C 1.47020 * 125.64983 * 179.97438 * 13 11 10 27 27 H 1.08998 * 109.47241 * 299.99571 * 1 2 3 28 28 H 1.08997 * 109.46925 * 60.00044 * 1 2 3 29 29 H 1.08998 * 109.46543 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47159 * 59.99486 * 4 2 1 31 31 H 1.08997 * 109.47363 * 179.97438 * 4 2 1 32 32 H 1.08997 * 109.47024 * 59.99813 * 5 4 2 33 33 H 1.08998 * 109.46936 * 179.97438 * 5 4 2 34 34 H 1.08998 * 109.47460 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46969 * 299.99874 * 6 5 4 36 36 H 1.08997 * 109.47513 * 179.97438 * 7 6 5 37 37 H 1.09007 * 109.46963 * 60.00164 * 7 6 5 38 38 H 1.09004 * 109.47321 * 64.99888 * 10 8 2 39 39 H 1.08999 * 109.46995 * 304.99803 * 10 8 2 40 40 H 1.09003 * 110.29227 * 37.02448 * 14 13 11 41 41 H 1.08996 * 110.53057 * 274.75660 * 14 13 11 42 42 H 1.08994 * 111.00889 * 279.01887 * 15 14 13 43 43 H 1.09006 * 111.00238 * 155.16698 * 15 14 13 44 44 H 0.96693 * 114.00637 * 66.39043 * 17 16 15 45 45 H 0.96999 * 119.99465 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.88367 * 61.60808 * 26 13 11 47 47 H 1.09000 * 109.88319 * 300.59426 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2492 8 6 2.0401 -0.7212 1.2492 9 1 3.1301 -0.7208 1.2494 10 6 1.5301 -0.0001 2.4985 11 6 2.1309 -0.6353 3.7258 12 8 2.8919 -1.5730 3.6125 13 7 1.8228 -0.1616 4.9494 14 6 0.9169 0.9699 5.2356 15 6 0.4188 0.7233 6.6816 16 6 1.6916 0.1459 7.3553 17 8 2.5672 1.1951 7.7729 18 6 1.3245 -0.7353 8.5214 19 1 1.5235 -1.7960 8.4803 20 6 0.7346 -0.1874 9.6407 21 7 0.4919 1.1041 9.6905 22 14 0.2790 -1.2799 11.0858 23 1 0.6533 -2.6845 10.7819 24 1 1.0062 -0.8257 12.2983 25 1 -1.1841 -1.1981 11.3263 26 6 2.3343 -0.6848 6.2246 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7208 -1.2495 32 1 0.4401 -2.1637 -1.2493 33 1 1.8931 -2.6773 -2.1395 34 1 1.6772 -3.9128 -0.0003 35 1 3.1302 -2.8849 -0.0001 36 1 1.8931 -2.6778 2.1391 37 1 0.4401 -2.1638 1.2492 38 1 0.4437 -0.0770 2.5444 39 1 1.8184 1.0502 2.4548 40 1 0.0779 0.9677 4.5398 41 1 1.4557 1.9155 5.1760 42 1 -0.3945 -0.0022 6.6963 43 1 0.1157 1.6573 7.1549 44 1 2.2100 1.7467 8.4821 45 1 0.0766 1.4895 10.4779 46 1 3.4189 -0.5814 6.2594 47 1 2.0584 -1.7338 6.3323 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:37 Heat of formation + Delta-G solvation = -116.860431 kcal Electronic energy + Delta-G solvation = -25082.666260 eV Core-core repulsion = 21649.819894 eV Total energy + Delta-G solvation = -3432.846366 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08735 -38.78037 -37.12934 -34.31142 -32.80758 -32.16989 -31.65800 -29.87093 -28.53887 -27.67969 -26.25809 -24.78241 -22.56201 -22.21259 -21.43406 -19.67560 -18.63431 -18.38365 -17.29014 -16.58288 -15.70527 -15.49310 -15.22870 -14.97746 -14.47535 -14.30997 -14.03667 -13.76596 -13.59628 -13.03625 -12.89134 -12.70637 -12.41462 -12.17383 -11.97583 -11.80678 -11.60967 -11.50144 -11.38791 -11.35044 -11.29486 -11.07889 -10.92004 -10.71882 -10.61413 -10.48123 -10.21390 -10.13108 -10.07417 -9.93492 -9.43220 -9.15511 -8.68856 -8.22471 -7.97321 -6.32005 -4.38941 3.12449 3.17284 3.26458 3.31252 3.57982 4.25032 4.60201 4.64726 4.67331 4.93558 5.01798 5.12312 5.20066 5.26838 5.31051 5.34249 5.49862 5.54803 5.57819 5.62777 5.67908 5.74936 5.79544 5.84366 5.88726 5.92448 5.98380 6.01439 6.06956 6.11234 6.18655 6.21600 6.29419 6.34568 6.46506 6.56124 6.62008 6.70910 6.90178 6.97577 7.28250 7.32393 7.71593 7.98847 8.16491 8.62987 8.70353 9.29586 9.43662 10.75874 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.031491 B = 0.003292 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.925896 B = 8504.660271 C = 8748.260833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.116 4.116 7 C -0.122 4.122 8 C -0.063 4.063 9 H 0.076 0.924 10 C -0.133 4.133 11 C 0.521 3.479 12 O -0.553 6.553 13 N -0.611 5.611 14 C 0.097 3.903 15 C -0.137 4.137 16 C 0.247 3.753 17 O -0.587 6.587 18 C -0.534 4.534 19 H 0.065 0.935 20 C 0.071 3.929 21 N -0.898 5.898 22 Si 0.903 3.097 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.122 3.878 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.386 0.614 45 H 0.268 0.732 46 H 0.059 0.941 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 0.036 -17.541 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.082 4.082 9 H 0.094 0.906 10 C -0.173 4.173 11 C 0.309 3.691 12 O -0.432 6.432 13 N -0.343 5.343 14 C -0.026 4.026 15 C -0.176 4.176 16 C 0.207 3.793 17 O -0.397 6.397 18 C -0.572 4.572 19 H 0.083 0.917 20 C -0.131 4.131 21 N -0.538 5.538 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.208 1.208 26 C 0.000 4.000 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.238 0.762 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.383 -0.608 -18.012 18.075 hybrid contribution -0.773 -0.089 1.335 1.545 sum -2.156 -0.697 -16.676 16.830 Atomic orbital electron populations 1.22000 0.95460 1.02193 1.01390 1.21142 0.95922 0.98950 0.94606 0.91403 1.21531 1.00538 0.95722 0.97179 1.21585 1.00833 0.95638 0.97795 1.21491 1.00808 0.98544 0.94534 1.21739 0.99962 0.95263 0.98935 1.20885 1.00790 0.94811 0.91705 0.90563 1.21757 1.01915 1.00783 0.92808 1.20267 0.81676 0.83599 0.83523 1.90621 1.37257 1.29172 1.86178 1.48767 1.46241 1.33425 1.05912 1.22518 0.92008 0.89004 0.99051 1.23308 1.00300 1.02482 0.91499 1.19437 0.84709 0.85121 0.90039 1.86096 1.47462 1.47067 1.59085 1.21602 1.40135 0.94959 1.00518 0.91673 1.24995 0.94214 0.95343 0.98541 1.69583 1.43512 1.10737 1.29986 0.86348 0.78054 0.80753 0.81761 1.19568 1.20736 1.20806 1.22045 0.98486 0.97900 0.81555 0.92508 0.93117 0.91955 0.92325 0.92092 0.91887 0.92620 0.92461 0.92138 0.89793 0.92523 0.89145 0.89435 0.92248 0.91946 0.91491 0.89689 0.76213 0.92156 0.92260 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.15 37.16 0.30 -1.08 16 2 C -0.09 -0.86 2.72 -90.62 -0.25 -1.11 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.11 -1.02 5.45 -26.73 -0.15 -1.16 16 5 C -0.12 -1.11 5.65 -26.73 -0.15 -1.26 16 6 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 7 C -0.12 -1.55 4.67 -26.73 -0.12 -1.68 16 8 C -0.06 -0.78 1.61 -90.62 -0.15 -0.92 16 9 H 0.08 1.07 7.95 -51.93 -0.41 0.65 16 10 C -0.13 -1.77 3.69 -27.88 -0.10 -1.88 16 11 C 0.52 9.49 7.57 -10.99 -0.08 9.40 16 12 O -0.55 -11.61 14.29 5.55 0.08 -11.53 16 13 N -0.61 -11.97 3.34 -170.26 -0.57 -12.53 16 14 C 0.10 1.72 6.71 -2.35 -0.02 1.70 16 15 C -0.14 -2.91 5.68 -24.58 -0.14 -3.05 16 16 C 0.25 5.95 0.86 -89.94 -0.08 5.87 16 17 O -0.59 -14.81 13.09 -35.23 -0.46 -15.27 16 18 C -0.53 -13.91 8.21 -34.44 -0.28 -14.19 16 19 H 0.07 1.71 7.53 -52.49 -0.40 1.32 16 20 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 21 N -0.90 -22.85 10.70 55.43 0.59 -22.26 16 22 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.12 2.77 6.21 -3.07 -0.02 2.75 16 27 H 0.06 0.51 6.54 -51.93 -0.34 0.17 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.58 4.81 -51.93 -0.25 0.33 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.34 5.95 -51.93 -0.31 1.03 16 37 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 38 H 0.09 1.10 6.43 -51.93 -0.33 0.76 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.87 7.50 -51.93 -0.39 0.48 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 43 H 0.08 1.87 7.77 -51.93 -0.40 1.47 16 44 H 0.39 9.80 6.98 45.56 0.32 10.12 16 45 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 46 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 47 H 0.07 1.62 7.63 -51.93 -0.40 1.22 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -27.47 350.31 -8.94 -36.41 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -7.36 Total: 11.11 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.48 Total: -6.31 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.03 Total: -34.79 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.38 Total: -26.80 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.47 -8.94 -36.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.451 kcal (2) G-P(sol) polarization free energy of solvation -27.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds