Wall clock time and date at job start Tue Mar 31 2020 07:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47017 * 2 1 4 4 C 1.52999 * 109.47322 * 240.00249 * 2 1 3 5 5 C 1.53001 * 109.47042 * 299.99809 * 4 2 1 6 6 C 1.52997 * 109.47152 * 300.00022 * 5 4 2 7 7 C 1.52997 * 109.47319 * 59.99706 * 6 5 4 8 8 C 1.53000 * 109.47500 * 120.00017 * 2 1 3 9 9 H 1.08997 * 109.47341 * 180.02562 * 8 2 1 10 10 C 1.52999 * 109.47022 * 300.00415 * 8 2 1 11 11 C 1.50697 * 109.47301 * 184.99758 * 10 8 2 12 12 O 1.21289 * 119.99700 * 359.97438 * 11 10 8 13 13 N 1.34780 * 120.00483 * 179.97438 * 11 10 8 14 14 C 1.47743 * 125.81887 * 359.90665 * 13 11 10 15 15 C 1.54909 * 104.83995 * 155.82587 * 14 13 11 16 16 C 1.55159 * 101.57990 * 37.09908 * 15 14 13 17 17 O 1.42898 * 110.87348 * 82.92981 * 16 15 14 18 18 C 1.50700 * 110.71873 * 206.13106 * 16 15 14 19 19 H 1.07998 * 119.99901 * 113.51991 * 18 16 15 20 20 C 1.37879 * 120.00056 * 293.51821 * 18 16 15 21 21 N 1.31512 * 119.99872 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 119.99776 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47517 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46780 * 120.00159 * 22 20 18 25 25 H 1.48501 * 109.47285 * 240.00203 * 22 20 18 26 26 C 1.47020 * 125.64983 * 179.97438 * 13 11 10 27 27 H 1.08998 * 109.47241 * 299.99571 * 1 2 3 28 28 H 1.08997 * 109.46925 * 60.00044 * 1 2 3 29 29 H 1.08998 * 109.46543 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47159 * 59.99486 * 4 2 1 31 31 H 1.08997 * 109.47363 * 179.97438 * 4 2 1 32 32 H 1.08997 * 109.47024 * 59.99813 * 5 4 2 33 33 H 1.08998 * 109.46936 * 179.97438 * 5 4 2 34 34 H 1.08998 * 109.47460 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46969 * 299.99874 * 6 5 4 36 36 H 1.08997 * 109.47513 * 179.97438 * 7 6 5 37 37 H 1.09007 * 109.46963 * 60.00164 * 7 6 5 38 38 H 1.09004 * 109.47321 * 64.99888 * 10 8 2 39 39 H 1.08999 * 109.46995 * 304.99803 * 10 8 2 40 40 H 1.09003 * 110.29227 * 37.02448 * 14 13 11 41 41 H 1.08996 * 110.53057 * 274.75660 * 14 13 11 42 42 H 1.08994 * 111.00889 * 279.01887 * 15 14 13 43 43 H 1.09006 * 111.00238 * 155.16698 * 15 14 13 44 44 H 0.96693 * 114.00637 * 66.39043 * 17 16 15 45 45 H 0.96999 * 119.99465 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.88367 * 61.60808 * 26 13 11 47 47 H 1.09000 * 109.88319 * 300.59426 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2492 8 6 2.0401 -0.7212 1.2492 9 1 3.1301 -0.7208 1.2494 10 6 1.5301 -0.0001 2.4985 11 6 2.1309 -0.6353 3.7258 12 8 2.8919 -1.5730 3.6125 13 7 1.8228 -0.1616 4.9494 14 6 0.9169 0.9699 5.2356 15 6 0.4188 0.7233 6.6816 16 6 1.6916 0.1459 7.3553 17 8 2.5672 1.1951 7.7729 18 6 1.3245 -0.7353 8.5214 19 1 1.5235 -1.7960 8.4803 20 6 0.7346 -0.1874 9.6407 21 7 0.4919 1.1041 9.6905 22 14 0.2790 -1.2799 11.0858 23 1 0.6533 -2.6845 10.7819 24 1 1.0062 -0.8257 12.2983 25 1 -1.1841 -1.1981 11.3263 26 6 2.3343 -0.6848 6.2246 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7208 -1.2495 32 1 0.4401 -2.1637 -1.2493 33 1 1.8931 -2.6773 -2.1395 34 1 1.6772 -3.9128 -0.0003 35 1 3.1302 -2.8849 -0.0001 36 1 1.8931 -2.6778 2.1391 37 1 0.4401 -2.1638 1.2492 38 1 0.4437 -0.0770 2.5444 39 1 1.8184 1.0502 2.4548 40 1 0.0779 0.9677 4.5398 41 1 1.4557 1.9155 5.1760 42 1 -0.3945 -0.0022 6.6963 43 1 0.1157 1.6573 7.1549 44 1 2.2100 1.7467 8.4821 45 1 0.0766 1.4895 10.4779 46 1 3.4189 -0.5814 6.2594 47 1 2.0584 -1.7338 6.3323 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:36 Heat of formation + Delta-G solvation = -132.914145 kcal Electronic energy + Delta-G solvation = -25083.362401 eV Core-core repulsion = 21649.819894 eV Total energy + Delta-G solvation = -3433.542507 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.36062 -40.03703 -38.72923 -36.09506 -34.16343 -33.77860 -32.53019 -31.52058 -30.14631 -28.80802 -27.38157 -26.35418 -24.01201 -23.18284 -22.46410 -21.44242 -20.07856 -19.32215 -19.16098 -18.00914 -17.02657 -16.91671 -16.62879 -16.52956 -16.00172 -15.50185 -15.31726 -14.87924 -14.77700 -14.66740 -13.88774 -13.82765 -13.78169 -13.53561 -13.34359 -13.24870 -13.18393 -13.04241 -12.67641 -12.63797 -12.42580 -12.38626 -12.27931 -12.16569 -12.00073 -11.88448 -11.60576 -11.29871 -11.11655 -11.03474 -10.77452 -10.67839 -10.49142 -10.14136 -9.58340 -8.27319 -6.41245 1.39089 1.43550 1.53547 1.68264 2.08065 2.38845 2.98085 3.55233 3.73181 3.82346 3.86061 3.98526 4.02991 4.23032 4.29041 4.33200 4.38153 4.46144 4.52204 4.54052 4.57730 4.59009 4.67355 4.74493 4.80579 4.85022 4.91144 4.94150 5.07789 5.13636 5.17845 5.23332 5.24490 5.26492 5.32035 5.36699 5.44831 5.46833 5.51411 5.52660 5.63285 5.73768 5.75268 6.04994 6.59582 6.68996 7.21551 7.29880 7.43716 8.79265 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.031491 B = 0.003292 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.925896 B = 8504.660271 C = 8748.260833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 H 0.078 0.922 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.120 4.120 8 C -0.060 4.060 9 H 0.053 0.947 10 C -0.122 4.122 11 C 0.514 3.486 12 O -0.587 6.587 13 N -0.616 5.616 14 C 0.106 3.894 15 C -0.128 4.128 16 C 0.235 3.765 17 O -0.595 6.595 18 C -0.564 4.564 19 H 0.050 0.950 20 C 0.037 3.963 21 N -0.907 5.907 22 Si 0.960 3.040 23 H -0.277 1.277 24 H -0.278 1.278 25 H -0.273 1.273 26 C 0.129 3.871 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.067 0.933 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.383 0.617 45 H 0.273 0.727 46 H 0.037 0.963 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.807 1.129 -19.385 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.157 4.157 8 C -0.079 4.079 9 H 0.072 0.928 10 C -0.162 4.162 11 C 0.305 3.695 12 O -0.468 6.468 13 N -0.349 5.349 14 C -0.016 4.016 15 C -0.167 4.167 16 C 0.195 3.805 17 O -0.405 6.405 18 C -0.602 4.602 19 H 0.068 0.932 20 C -0.164 4.164 21 N -0.546 5.546 22 Si 0.786 3.214 23 H -0.202 1.202 24 H -0.204 1.204 25 H -0.199 1.199 26 C 0.005 3.995 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.234 0.766 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.088 0.503 -19.876 20.121 hybrid contribution -0.187 -0.474 1.935 2.001 sum -3.275 0.029 -17.941 18.238 Atomic orbital electron populations 1.22002 0.94387 1.02268 1.02327 1.21112 0.96706 0.99041 0.93184 0.90406 1.21550 1.00245 0.95631 0.97557 1.21560 1.01271 0.95640 0.96913 1.21480 1.00069 0.98904 0.94902 1.21673 1.00445 0.95540 0.98086 1.20866 0.99474 0.94807 0.92799 0.92846 1.21833 1.02739 1.01447 0.90138 1.21277 0.80993 0.83027 0.84171 1.90614 1.38800 1.30780 1.86636 1.48873 1.46723 1.34018 1.05269 1.22547 0.92941 0.88478 0.97603 1.23093 0.98569 1.01475 0.93579 1.19585 0.85957 0.84951 0.90026 1.86081 1.48194 1.47285 1.58967 1.21790 1.41447 0.94705 1.02234 0.93187 1.25590 0.93939 0.96584 1.00309 1.69628 1.43092 1.11357 1.30562 0.85478 0.78092 0.78858 0.78987 1.20190 1.20371 1.19851 1.21732 0.97182 0.97156 0.83393 0.92199 0.91618 0.92296 0.90460 0.92733 0.91052 0.91493 0.92225 0.93373 0.93686 0.91489 0.86940 0.87182 0.87977 0.91007 0.92255 0.90474 0.76597 0.91714 0.94408 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.15 71.98 0.59 -1.58 16 2 C -0.08 -1.36 2.72 -10.79 -0.03 -1.39 16 3 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 4 C -0.11 -1.72 5.45 30.59 0.17 -1.56 16 5 C -0.12 -1.86 5.65 30.59 0.17 -1.69 16 6 C -0.12 -2.46 5.92 30.59 0.18 -2.28 16 7 C -0.12 -3.00 4.67 30.59 0.14 -2.86 16 8 C -0.06 -1.41 1.61 -10.79 -0.02 -1.42 16 9 H 0.05 1.49 7.95 -2.39 -0.02 1.47 16 10 C -0.12 -2.98 3.69 29.85 0.11 -2.87 16 11 C 0.51 18.54 7.57 87.66 0.66 19.21 16 12 O -0.59 -25.44 14.29 -3.06 -0.04 -25.48 16 13 N -0.62 -23.91 3.34 -810.98 -2.71 -26.62 16 14 C 0.11 3.55 6.71 86.79 0.58 4.13 16 15 C -0.13 -5.38 5.68 31.99 0.18 -5.20 16 16 C 0.23 11.51 0.86 -10.35 -0.01 11.51 16 17 O -0.60 -30.59 13.09 -148.98 -1.95 -32.54 16 18 C -0.56 -30.09 8.21 25.60 0.21 -29.88 16 19 H 0.05 2.74 7.53 -2.91 -0.02 2.72 16 20 C 0.04 1.89 5.28 84.66 0.45 2.34 16 21 N -0.91 -45.97 10.70 21.45 0.23 -45.74 16 22 Si 0.96 41.36 29.54 68.60 2.03 43.39 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 C 0.13 6.04 6.21 86.73 0.54 6.58 16 27 H 0.06 0.82 6.54 -2.39 -0.02 0.80 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.88 4.81 -2.39 -0.01 0.87 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.05 6.43 -2.39 -0.02 1.03 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.04 1.48 5.95 -2.39 -0.01 1.47 16 37 H 0.07 1.51 6.43 -2.38 -0.02 1.49 16 38 H 0.11 2.30 6.43 -2.38 -0.02 2.28 16 39 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.10 2.58 7.50 -2.39 -0.02 2.56 16 41 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.06 2.54 8.04 -2.39 -0.02 2.52 16 43 H 0.08 3.34 7.77 -2.38 -0.02 3.32 16 44 H 0.38 19.75 6.98 -74.06 -0.52 19.23 16 45 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 46 H 0.04 1.88 8.07 -2.39 -0.02 1.87 16 47 H 0.05 2.66 7.63 -2.39 -0.02 2.64 16 Total: -1.00 -60.95 350.31 1.92 -59.03 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: 0.44 Total: 34.94 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 3.93 Total: -6.97 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -2.48 Total: -72.36 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: -1.99 Total: -58.03 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -60.95 1.92 -59.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.886 kcal (2) G-P(sol) polarization free energy of solvation -60.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds