Wall clock time and date at job start Tue Mar 31 2020 07:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47108 * 2 1 4 4 C 1.52996 * 109.46950 * 239.99905 * 2 1 3 5 5 C 1.53003 * 109.47304 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.46609 * 59.99978 * 5 4 2 7 7 C 1.52996 * 109.47461 * 300.00382 * 6 5 4 8 8 C 1.52995 * 109.47236 * 59.99859 * 7 6 5 9 9 H 1.09007 * 109.46945 * 60.00508 * 8 7 6 10 10 C 1.53006 * 109.47234 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.47184 * 295.00598 * 10 8 7 12 12 O 1.21282 * 120.00025 * 359.97438 * 11 10 8 13 13 N 1.34776 * 120.00035 * 180.02562 * 11 10 8 14 14 C 1.47420 * 125.64882 * 0.02562 * 13 11 10 15 15 C 1.54905 * 104.83404 * 204.09477 * 14 13 11 16 16 C 1.55160 * 101.58155 * 322.99320 * 15 14 13 17 17 O 1.42902 * 110.71729 * 277.13573 * 16 15 14 18 18 C 1.50700 * 110.72232 * 154.04178 * 16 15 14 19 19 H 1.07992 * 120.00164 * 241.44773 * 18 16 15 20 20 C 1.37883 * 119.99692 * 61.45115 * 18 16 15 21 21 N 1.31513 * 120.00233 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 119.99595 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47258 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46835 * 120.00301 * 22 20 18 25 25 H 1.48501 * 109.47244 * 239.99846 * 22 20 18 26 26 C 1.47022 * 125.64634 * 179.71370 * 13 11 10 27 27 H 1.09002 * 109.47044 * 299.99808 * 1 2 3 28 28 H 1.09004 * 109.47376 * 59.99367 * 1 2 3 29 29 H 1.08996 * 109.47552 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47312 * 300.00537 * 4 2 1 31 31 H 1.09007 * 109.46984 * 60.00178 * 4 2 1 32 32 H 1.08992 * 109.47094 * 179.97438 * 5 4 2 33 33 H 1.09001 * 109.46679 * 300.00652 * 5 4 2 34 34 H 1.08997 * 109.47294 * 60.00447 * 6 5 4 35 35 H 1.09000 * 109.46971 * 180.02562 * 6 5 4 36 36 H 1.09006 * 109.46758 * 299.99685 * 7 6 5 37 37 H 1.09003 * 109.47204 * 180.02562 * 7 6 5 38 38 H 1.09001 * 109.47002 * 55.00002 * 10 8 7 39 39 H 1.08993 * 109.46955 * 175.00440 * 10 8 7 40 40 H 1.09003 * 110.36800 * 322.93105 * 14 13 11 41 41 H 1.08998 * 110.36628 * 85.14360 * 14 13 11 42 42 H 1.09003 * 111.00434 * 81.05983 * 15 14 13 43 43 H 1.09004 * 111.00641 * 204.87868 * 15 14 13 44 44 H 0.96698 * 114.00130 * 298.55340 * 17 16 15 45 45 H 0.96999 * 119.99840 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.88516 * 298.38981 * 26 13 11 47 47 H 1.08999 * 109.88211 * 59.55898 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2490 6 6 4.0794 -1.4435 0.0003 7 6 3.5694 -0.7223 1.2495 8 6 2.0394 -0.7217 1.2492 9 1 1.6757 -1.7493 1.2490 10 6 1.5294 0.0001 2.4982 11 6 1.9276 -0.7780 3.7258 12 8 2.5569 -1.8086 3.6129 13 7 1.5835 -0.3291 4.9491 14 6 0.8216 0.9013 5.2299 15 6 1.2160 1.2906 6.6764 16 6 1.3338 -0.1010 7.3524 17 8 0.0495 -0.5733 7.7643 18 6 2.2804 -0.0464 8.5238 19 1 3.1758 -0.6502 8.5230 20 6 2.0032 0.7744 9.5965 21 7 0.9125 1.5092 9.5976 22 14 3.1762 0.8414 11.0487 23 1 4.3199 -0.0736 10.8039 24 1 3.6795 2.2287 11.2148 25 1 2.4620 0.4231 12.2817 26 6 1.9002 -0.9888 6.2243 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6765 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.9332 -1.2361 -2.1387 33 1 3.9336 0.3057 -1.2487 34 1 3.7157 -2.4710 0.0001 35 1 5.1694 -1.4436 0.0008 36 1 3.9332 0.3052 1.2498 37 1 3.9327 -1.2362 2.1395 38 1 1.9644 0.9985 2.5439 39 1 0.4432 0.0787 2.4542 40 1 1.1056 1.6906 4.5339 41 1 -0.2491 0.7074 5.1660 42 1 2.1714 1.8151 6.6932 43 1 0.4357 1.8893 7.1466 44 1 -0.3868 -0.0082 8.4165 45 1 0.7177 2.0868 10.3521 46 1 1.4360 -1.9745 6.2571 47 1 2.9806 -1.0817 6.3353 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:42 Heat of formation + Delta-G solvation = -120.634758 kcal Electronic energy + Delta-G solvation = -25007.870107 eV Core-core repulsion = 21574.860074 eV Total energy + Delta-G solvation = -3433.010033 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.97892 -38.64086 -37.10379 -34.30439 -33.12862 -32.23014 -31.96762 -29.82915 -28.52863 -27.51132 -26.03406 -24.78293 -22.55951 -21.86008 -20.98186 -19.82488 -19.58745 -18.57523 -17.24352 -16.54187 -15.48428 -15.25173 -14.99247 -14.93138 -14.58159 -14.27599 -14.14798 -14.02237 -13.65549 -13.03839 -12.94101 -12.64759 -12.16518 -12.16364 -11.92046 -11.84096 -11.68820 -11.51720 -11.42123 -11.37132 -11.28868 -10.97331 -10.92037 -10.83514 -10.62823 -10.46764 -10.40101 -10.12157 -10.07424 -9.95463 -9.41622 -9.14761 -8.68830 -8.23223 -7.97105 -6.30334 -4.37558 3.12326 3.17869 3.27009 3.31882 3.58404 4.25928 4.58794 4.63455 4.69047 4.94637 5.00044 5.04727 5.17442 5.27410 5.35025 5.44494 5.48823 5.53322 5.54311 5.63600 5.69535 5.72563 5.77465 5.79639 5.88647 5.92510 5.98954 6.01661 6.04501 6.16272 6.16894 6.21462 6.28661 6.32205 6.45789 6.56457 6.58434 6.71132 6.90673 6.98427 7.28552 7.34048 7.71843 8.01540 8.16537 8.64695 8.70358 9.28939 9.37987 10.77234 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.030207 B = 0.003334 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.728102 B = 8397.239490 C = 8829.998471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.121 4.121 8 C -0.063 4.063 9 H 0.077 0.923 10 C -0.135 4.135 11 C 0.520 3.480 12 O -0.553 6.553 13 N -0.610 5.610 14 C 0.095 3.905 15 C -0.134 4.134 16 C 0.246 3.754 17 O -0.586 6.586 18 C -0.533 4.533 19 H 0.064 0.936 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.902 3.098 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.123 3.877 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.382 0.618 45 H 0.267 0.733 46 H 0.059 0.941 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.137 1.380 -17.534 17.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.082 4.082 9 H 0.095 0.905 10 C -0.174 4.174 11 C 0.309 3.691 12 O -0.432 6.432 13 N -0.343 5.343 14 C -0.028 4.028 15 C -0.173 4.173 16 C 0.206 3.794 17 O -0.395 6.395 18 C -0.572 4.572 19 H 0.083 0.917 20 C -0.130 4.130 21 N -0.535 5.535 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.001 3.999 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.232 0.768 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.261 0.457 -17.976 17.984 hybrid contribution 0.356 0.757 1.306 1.551 sum 0.617 1.214 -16.670 16.726 Atomic orbital electron populations 1.21925 0.95440 1.01930 1.01598 1.21175 0.95298 0.99538 0.94607 0.91280 1.21564 0.95556 1.00659 0.97158 1.21553 0.95688 1.00602 0.97875 1.21499 0.99856 0.99563 0.94503 1.21714 0.94752 1.00335 0.99009 1.20913 0.95907 0.99648 0.91700 0.90496 1.21789 1.02757 1.00095 0.92804 1.20267 0.79627 0.85642 0.83538 1.90617 1.41296 1.25126 1.86195 1.48700 1.54300 1.25345 1.05932 1.22494 0.95414 0.85594 0.99267 1.23292 1.02025 1.00803 0.91192 1.19488 0.82514 0.87314 0.90076 1.86141 1.33840 1.55248 1.64227 1.21554 1.07686 1.25369 1.02571 0.91749 1.24986 0.95459 0.94236 0.98368 1.69703 1.25138 1.26985 1.31716 0.86366 0.80875 0.77912 0.81862 1.19582 1.20836 1.20755 1.22033 0.99817 0.96542 0.81514 0.92264 0.92920 0.92662 0.92037 0.92310 0.92484 0.92237 0.92083 0.92417 0.92861 0.89679 0.89408 0.89042 0.92219 0.92046 0.91509 0.89393 0.76829 0.92292 0.92246 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.85 37.16 0.33 -1.05 16 2 C -0.09 -0.86 2.25 -90.62 -0.20 -1.07 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.11 -1.02 5.20 -26.73 -0.14 -1.16 16 5 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 6 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 7 C -0.12 -1.55 4.94 -26.74 -0.13 -1.69 16 8 C -0.06 -0.78 1.36 -90.62 -0.12 -0.90 16 9 H 0.08 1.08 7.96 -51.93 -0.41 0.67 16 10 C -0.13 -1.80 3.96 -27.88 -0.11 -1.91 16 11 C 0.52 9.49 7.57 -10.99 -0.08 9.40 16 12 O -0.55 -11.61 14.29 5.56 0.08 -11.53 16 13 N -0.61 -11.94 3.33 -170.52 -0.57 -12.51 16 14 C 0.10 1.69 6.68 -2.53 -0.02 1.67 16 15 C -0.13 -2.86 5.47 -24.58 -0.13 -2.99 16 16 C 0.25 5.90 0.84 -89.93 -0.08 5.82 16 17 O -0.59 -14.60 13.06 -35.23 -0.46 -15.06 16 18 C -0.53 -13.92 8.23 -34.44 -0.28 -14.20 16 19 H 0.06 1.70 7.58 -52.49 -0.40 1.30 16 20 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 21 N -0.90 -22.75 10.67 55.43 0.59 -22.16 16 22 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.12 2.78 6.23 -3.06 -0.02 2.76 16 27 H 0.06 0.54 6.32 -51.93 -0.33 0.21 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.36 5.95 -51.93 -0.31 1.05 16 38 H 0.09 1.07 7.85 -51.93 -0.41 0.66 16 39 H 0.09 1.11 6.17 -51.93 -0.32 0.79 16 40 H 0.06 0.88 7.48 -51.93 -0.39 0.49 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 43 H 0.09 1.94 7.53 -51.93 -0.39 1.55 16 44 H 0.38 9.47 7.46 45.56 0.34 9.81 16 45 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 46 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 47 H 0.07 1.63 7.67 -51.93 -0.40 1.23 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -27.46 356.87 -9.04 -36.50 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -7.64 Total: 10.50 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -1.40 Total: -6.27 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.02 Total: -34.67 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.38 Total: -26.59 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.46 -9.04 -36.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.136 kcal (2) G-P(sol) polarization free energy of solvation -27.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds