Wall clock time and date at job start Tue Mar 31 2020 07:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47108 * 2 1 4 4 C 1.52996 * 109.46950 * 239.99905 * 2 1 3 5 5 C 1.53003 * 109.47304 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.46609 * 59.99978 * 5 4 2 7 7 C 1.52996 * 109.47461 * 300.00382 * 6 5 4 8 8 C 1.52995 * 109.47236 * 59.99859 * 7 6 5 9 9 H 1.09007 * 109.46945 * 60.00508 * 8 7 6 10 10 C 1.53006 * 109.47234 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.47184 * 295.00598 * 10 8 7 12 12 O 1.21282 * 120.00025 * 359.97438 * 11 10 8 13 13 N 1.34776 * 120.00035 * 180.02562 * 11 10 8 14 14 C 1.47420 * 125.64882 * 0.02562 * 13 11 10 15 15 C 1.54905 * 104.83404 * 204.09477 * 14 13 11 16 16 C 1.55160 * 101.58155 * 322.99320 * 15 14 13 17 17 O 1.42902 * 110.71729 * 277.13573 * 16 15 14 18 18 C 1.50700 * 110.72232 * 154.04178 * 16 15 14 19 19 H 1.07992 * 120.00164 * 241.44773 * 18 16 15 20 20 C 1.37883 * 119.99692 * 61.45115 * 18 16 15 21 21 N 1.31513 * 120.00233 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 119.99595 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47258 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46835 * 120.00301 * 22 20 18 25 25 H 1.48501 * 109.47244 * 239.99846 * 22 20 18 26 26 C 1.47022 * 125.64634 * 179.71370 * 13 11 10 27 27 H 1.09002 * 109.47044 * 299.99808 * 1 2 3 28 28 H 1.09004 * 109.47376 * 59.99367 * 1 2 3 29 29 H 1.08996 * 109.47552 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47312 * 300.00537 * 4 2 1 31 31 H 1.09007 * 109.46984 * 60.00178 * 4 2 1 32 32 H 1.08992 * 109.47094 * 179.97438 * 5 4 2 33 33 H 1.09001 * 109.46679 * 300.00652 * 5 4 2 34 34 H 1.08997 * 109.47294 * 60.00447 * 6 5 4 35 35 H 1.09000 * 109.46971 * 180.02562 * 6 5 4 36 36 H 1.09006 * 109.46758 * 299.99685 * 7 6 5 37 37 H 1.09003 * 109.47204 * 180.02562 * 7 6 5 38 38 H 1.09001 * 109.47002 * 55.00002 * 10 8 7 39 39 H 1.08993 * 109.46955 * 175.00440 * 10 8 7 40 40 H 1.09003 * 110.36800 * 322.93105 * 14 13 11 41 41 H 1.08998 * 110.36628 * 85.14360 * 14 13 11 42 42 H 1.09003 * 111.00434 * 81.05983 * 15 14 13 43 43 H 1.09004 * 111.00641 * 204.87868 * 15 14 13 44 44 H 0.96698 * 114.00130 * 298.55340 * 17 16 15 45 45 H 0.96999 * 119.99840 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.88516 * 298.38981 * 26 13 11 47 47 H 1.08999 * 109.88211 * 59.55898 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2490 6 6 4.0794 -1.4435 0.0003 7 6 3.5694 -0.7223 1.2495 8 6 2.0394 -0.7217 1.2492 9 1 1.6757 -1.7493 1.2490 10 6 1.5294 0.0001 2.4982 11 6 1.9276 -0.7780 3.7258 12 8 2.5569 -1.8086 3.6129 13 7 1.5835 -0.3291 4.9491 14 6 0.8216 0.9013 5.2299 15 6 1.2160 1.2906 6.6764 16 6 1.3338 -0.1010 7.3524 17 8 0.0495 -0.5733 7.7643 18 6 2.2804 -0.0464 8.5238 19 1 3.1758 -0.6502 8.5230 20 6 2.0032 0.7744 9.5965 21 7 0.9125 1.5092 9.5976 22 14 3.1762 0.8414 11.0487 23 1 4.3199 -0.0736 10.8039 24 1 3.6795 2.2287 11.2148 25 1 2.4620 0.4231 12.2817 26 6 1.9002 -0.9888 6.2243 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6765 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.9332 -1.2361 -2.1387 33 1 3.9336 0.3057 -1.2487 34 1 3.7157 -2.4710 0.0001 35 1 5.1694 -1.4436 0.0008 36 1 3.9332 0.3052 1.2498 37 1 3.9327 -1.2362 2.1395 38 1 1.9644 0.9985 2.5439 39 1 0.4432 0.0787 2.4542 40 1 1.1056 1.6906 4.5339 41 1 -0.2491 0.7074 5.1660 42 1 2.1714 1.8151 6.6932 43 1 0.4357 1.8893 7.1466 44 1 -0.3868 -0.0082 8.4165 45 1 0.7177 2.0868 10.3521 46 1 1.4360 -1.9745 6.2571 47 1 2.9806 -1.0817 6.3353 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:42 Heat of formation + Delta-G solvation = -136.527674 kcal Electronic energy + Delta-G solvation = -25008.559276 eV Core-core repulsion = 21574.860074 eV Total energy + Delta-G solvation = -3433.699202 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.31909 -39.88047 -38.66056 -36.07910 -34.21964 -34.03050 -32.89978 -31.47746 -30.14983 -28.70139 -27.16804 -26.30423 -24.01776 -22.93316 -21.92057 -21.42888 -20.59359 -20.04323 -19.15135 -18.01254 -17.01264 -16.89907 -16.56493 -16.12842 -15.84594 -15.58253 -15.25716 -14.98880 -14.83589 -14.74464 -14.08513 -13.92397 -13.83902 -13.27300 -13.25900 -13.21061 -13.12284 -12.93080 -12.69494 -12.62880 -12.51304 -12.38004 -12.28633 -12.26791 -11.98528 -11.82716 -11.68083 -11.28049 -11.26791 -11.11426 -10.79555 -10.67657 -10.48892 -10.14221 -9.57983 -8.25861 -6.40063 1.38984 1.43474 1.53349 1.68097 2.08578 2.39226 2.99540 3.55087 3.72198 3.81461 3.85059 3.99092 4.02153 4.18229 4.26825 4.31994 4.36882 4.46800 4.49679 4.57120 4.58831 4.63669 4.66154 4.74702 4.77817 4.85172 4.91569 4.92693 5.02947 5.10552 5.17389 5.24689 5.25445 5.25888 5.34144 5.36061 5.42444 5.47157 5.52172 5.53209 5.59503 5.69069 5.75610 6.07882 6.60765 6.69131 7.21465 7.30214 7.39799 8.80200 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.030207 B = 0.003334 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.728102 B = 8397.239490 C = 8829.998471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.081 4.081 3 H 0.081 0.919 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.120 4.120 8 C -0.060 4.060 9 H 0.053 0.947 10 C -0.124 4.124 11 C 0.514 3.486 12 O -0.587 6.587 13 N -0.615 5.615 14 C 0.104 3.896 15 C -0.125 4.125 16 C 0.235 3.765 17 O -0.593 6.593 18 C -0.564 4.564 19 H 0.048 0.952 20 C 0.039 3.961 21 N -0.903 5.903 22 Si 0.958 3.042 23 H -0.278 1.278 24 H -0.274 1.274 25 H -0.278 1.278 26 C 0.129 3.871 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.380 0.620 45 H 0.272 0.728 46 H 0.039 0.961 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.658 3.342 -19.397 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 H 0.099 0.901 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.079 4.079 9 H 0.072 0.928 10 C -0.164 4.164 11 C 0.305 3.695 12 O -0.468 6.468 13 N -0.348 5.348 14 C -0.018 4.018 15 C -0.164 4.164 16 C 0.195 3.805 17 O -0.402 6.402 18 C -0.602 4.602 19 H 0.066 0.934 20 C -0.163 4.163 21 N -0.542 5.542 22 Si 0.784 3.216 23 H -0.203 1.203 24 H -0.199 1.199 25 H -0.203 1.203 26 C 0.006 3.994 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.229 0.771 45 H 0.081 0.919 46 H 0.057 0.943 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.275 2.433 -19.858 20.008 hybrid contribution 0.543 0.079 1.915 1.992 sum 0.268 2.513 -17.942 18.120 Atomic orbital electron populations 1.21929 0.94629 1.01786 1.02536 1.21137 0.95908 0.99692 0.93208 0.90061 1.21579 0.95329 1.00459 0.97532 1.21530 0.95863 1.00862 0.97016 1.21488 1.00061 0.98998 0.94842 1.21658 0.95344 1.00538 0.98231 1.20891 0.95411 0.98766 0.92788 0.92814 1.21866 1.04149 1.00196 0.90158 1.21268 0.78507 0.85517 0.84185 1.90611 1.42632 1.26929 1.86651 1.48802 1.54885 1.25827 1.05294 1.22522 0.95754 0.85717 0.97760 1.23066 1.01260 0.98727 0.93325 1.19611 0.81700 0.89213 0.90005 1.86126 1.34257 1.55630 1.64185 1.21740 1.07992 1.26121 1.04361 0.93396 1.25564 0.96819 0.93805 1.00113 1.69748 1.25536 1.26691 1.32243 0.85512 0.78969 0.77980 0.79152 1.20274 1.19899 1.20343 1.21720 0.98501 0.95828 0.83343 0.92011 0.91312 0.93394 0.92771 0.90406 0.91291 0.91379 0.93301 0.92155 0.91832 0.93520 0.87089 0.86936 0.88046 0.90976 0.92545 0.90140 0.77078 0.91859 0.94300 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.85 71.98 0.64 -1.62 16 2 C -0.08 -1.35 2.25 -10.80 -0.02 -1.37 16 3 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.11 -1.71 5.20 30.59 0.16 -1.55 16 5 C -0.12 -1.84 5.92 30.60 0.18 -1.66 16 6 C -0.12 -2.47 5.92 30.59 0.18 -2.29 16 7 C -0.12 -3.03 4.94 30.59 0.15 -2.88 16 8 C -0.06 -1.39 1.36 -10.79 -0.01 -1.41 16 9 H 0.05 1.51 7.96 -2.38 -0.02 1.49 16 10 C -0.12 -3.04 3.96 29.85 0.12 -2.92 16 11 C 0.51 18.55 7.57 87.66 0.66 19.22 16 12 O -0.59 -25.43 14.29 -3.04 -0.04 -25.48 16 13 N -0.62 -23.87 3.33 -811.79 -2.70 -26.57 16 14 C 0.10 3.49 6.68 86.85 0.58 4.07 16 15 C -0.13 -5.25 5.47 31.99 0.18 -5.08 16 16 C 0.23 11.46 0.84 -10.35 -0.01 11.45 16 17 O -0.59 -30.08 13.06 -148.98 -1.95 -32.02 16 18 C -0.56 -30.17 8.23 25.60 0.21 -29.96 16 19 H 0.05 2.64 7.58 -2.91 -0.02 2.62 16 20 C 0.04 1.98 5.28 84.66 0.45 2.43 16 21 N -0.90 -45.61 10.67 21.45 0.23 -45.38 16 22 Si 0.96 41.44 29.54 68.60 2.03 43.46 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 26 C 0.13 6.06 6.23 86.73 0.54 6.60 16 27 H 0.06 0.89 6.32 -2.39 -0.02 0.87 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 0.94 8.14 -2.38 -0.02 0.93 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.05 1.54 5.95 -2.39 -0.01 1.52 16 38 H 0.11 2.26 7.85 -2.39 -0.02 2.24 16 39 H 0.11 2.33 6.17 -2.39 -0.01 2.32 16 40 H 0.10 2.58 7.48 -2.39 -0.02 2.57 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.06 2.45 8.04 -2.39 -0.02 2.43 16 43 H 0.08 3.49 7.53 -2.39 -0.02 3.47 16 44 H 0.38 19.10 7.46 -74.06 -0.55 18.55 16 45 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 46 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16 47 H 0.05 2.65 7.67 -2.39 -0.02 2.63 16 Total: -1.00 -60.86 356.87 1.95 -58.91 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: 0.39 Total: 34.07 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 4.00 Total: -6.98 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -2.47 Total: -71.95 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -1.99 Total: -57.50 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -60.86 1.95 -58.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.621 kcal (2) G-P(sol) polarization free energy of solvation -60.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds