Wall clock time and date at job start Tue Mar 31 2020 07:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 C 1.52997 * 109.47232 * 240.00225 * 2 1 3 5 5 C 1.53005 * 109.47452 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47159 * 59.99536 * 5 4 2 7 7 C 1.52997 * 109.47317 * 300.00546 * 6 5 4 8 8 H 1.09002 * 109.47153 * 299.99641 * 7 6 5 9 9 C 1.53002 * 109.46817 * 179.97438 * 7 6 5 10 10 C 1.50696 * 109.47344 * 64.99877 * 9 7 6 11 11 O 1.21278 * 119.99753 * 0.02562 * 10 9 7 12 12 N 1.34771 * 120.00023 * 179.97438 * 10 9 7 13 13 C 1.47020 * 125.65083 * 0.02647 * 12 10 9 14 14 C 1.54321 * 107.27447 * 181.02038 * 13 12 10 15 15 C 1.55155 * 102.94114 * 22.19244 * 14 13 12 16 16 O 1.42898 * 111.00394 * 82.57159 * 15 14 13 17 17 C 1.50697 * 111.00594 * 206.38471 * 15 14 13 18 18 H 1.08000 * 120.00157 * 118.54863 * 17 15 14 19 19 C 1.37875 * 120.00196 * 298.54787 * 17 15 14 20 20 N 1.31515 * 120.00201 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00480 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46584 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47208 * 119.99987 * 21 19 17 24 24 H 1.48498 * 109.47119 * 240.00481 * 21 19 17 25 25 C 1.47430 * 125.64765 * 179.71618 * 12 10 9 26 26 C 1.53000 * 109.47060 * 59.99960 * 7 6 5 27 27 H 1.09000 * 109.47140 * 299.99624 * 1 2 3 28 28 H 1.09001 * 109.46922 * 59.99924 * 1 2 3 29 29 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 299.99992 * 4 2 1 31 31 H 1.09001 * 109.47289 * 60.00075 * 4 2 1 32 32 H 1.09000 * 109.47360 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.46935 * 300.00125 * 5 4 2 34 34 H 1.08996 * 109.46929 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.46716 * 60.00455 * 6 5 4 36 36 H 1.09008 * 109.46873 * 184.99985 * 9 7 6 37 37 H 1.08997 * 109.47047 * 304.99674 * 9 7 6 38 38 H 1.08995 * 109.88501 * 300.44127 * 13 12 10 39 39 H 1.09005 * 109.88076 * 61.60459 * 13 12 10 40 40 H 1.09000 * 110.72153 * 140.55915 * 14 13 12 41 41 H 1.09001 * 110.72191 * 263.65212 * 14 13 12 42 42 H 0.96708 * 113.99943 * 61.45781 * 16 15 14 43 43 H 0.96999 * 120.00324 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.36638 * 274.74568 * 25 12 10 45 45 H 1.08999 * 110.36358 * 37.07283 * 25 12 10 46 46 H 1.08992 * 109.47399 * 59.99823 * 26 7 6 47 47 H 1.09004 * 109.46724 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0806 -1.4415 -0.0004 7 6 3.5706 -0.7203 1.2489 8 1 3.9335 0.3075 1.2487 9 6 4.0807 -1.4416 2.4981 10 6 5.5825 -1.3352 2.5615 11 8 6.1855 -0.7406 1.6933 12 7 6.2555 -1.9000 3.5835 13 6 5.6531 -2.6459 4.6980 14 6 6.8016 -3.0798 5.6330 15 6 7.9287 -2.0699 5.2906 16 8 7.7468 -0.8407 5.9962 17 6 9.2862 -2.6581 5.5770 18 1 9.9990 -2.7867 4.7759 19 6 9.6185 -3.0320 6.8618 20 7 8.7504 -2.8758 7.8374 21 14 11.3010 -3.7617 7.2169 22 1 12.0852 -3.8329 5.9578 23 1 12.0151 -2.9052 8.1976 24 1 11.1400 -5.1275 7.7771 25 6 7.7183 -1.8776 3.7657 26 6 2.0406 -0.7210 1.2492 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2073 -2.1392 32 1 3.9334 -1.2341 -2.1398 33 1 3.9330 0.3072 -1.2498 34 1 5.1706 -1.4415 -0.0009 35 1 3.7176 -2.4693 -0.0002 36 1 3.6460 -0.9821 3.3859 37 1 3.7923 -2.4918 2.4544 38 1 4.9564 -2.0056 5.2390 39 1 5.1328 -3.5249 4.3174 40 1 6.5045 -2.9866 6.6776 41 1 7.1142 -4.1003 5.4120 42 1 7.7727 -0.9321 6.9586 43 1 8.9843 -3.1385 8.7414 44 1 8.1823 -2.6929 3.2106 45 1 8.1259 -0.9189 3.4449 46 1 1.6777 -1.7487 1.2494 47 1 1.6773 -0.2067 2.1390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:49 Heat of formation + Delta-G solvation = -123.094088 kcal Electronic energy + Delta-G solvation = -24747.722695 eV Core-core repulsion = 21314.606017 eV Total energy + Delta-G solvation = -3433.116678 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.86824 -38.61972 -37.12076 -34.27043 -33.31620 -32.23700 -31.83189 -29.87622 -28.48625 -27.18605 -26.37279 -24.85084 -22.43040 -21.95621 -20.85882 -19.80863 -19.65529 -18.51917 -17.18979 -16.54489 -15.44580 -15.30360 -15.06383 -14.95463 -14.57363 -14.31884 -14.10593 -13.87068 -13.57285 -13.19680 -13.01721 -12.48292 -12.34510 -12.20859 -11.99219 -11.90577 -11.76418 -11.47976 -11.35520 -11.31683 -11.23695 -10.99055 -10.90893 -10.80669 -10.62117 -10.46547 -10.41212 -10.19658 -10.02833 -9.97929 -9.41000 -9.14285 -8.69712 -8.22892 -7.94616 -6.29988 -4.37811 3.14427 3.17690 3.26903 3.31429 3.60791 4.25784 4.57928 4.61985 4.68798 4.93877 5.01593 5.03219 5.20518 5.23749 5.39484 5.45326 5.47277 5.53544 5.56229 5.61330 5.65439 5.72167 5.75656 5.79828 5.81405 5.88853 5.93541 5.97443 6.02748 6.17709 6.19489 6.23474 6.31428 6.33116 6.44382 6.55259 6.58293 6.67667 6.89250 6.98773 7.28588 7.33420 7.71996 8.01358 8.19503 8.64661 8.72098 9.29387 9.38178 10.77408 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.039945 B = 0.003000 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.795672 B = 9329.983968 C = 9664.724035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.069 4.069 8 H 0.077 0.923 9 C -0.132 4.132 10 C 0.522 3.478 11 O -0.553 6.553 12 N -0.609 5.609 13 C 0.099 3.901 14 C -0.136 4.136 15 C 0.247 3.753 16 O -0.582 6.582 17 C -0.534 4.534 18 H 0.065 0.935 19 C 0.072 3.928 20 N -0.895 5.895 21 Si 0.902 3.098 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.120 3.880 26 C -0.109 4.109 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.380 0.620 43 H 0.267 0.733 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.779 0.901 -10.383 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.157 4.157 7 C -0.088 4.088 8 H 0.095 0.905 9 C -0.172 4.172 10 C 0.311 3.689 11 O -0.433 6.433 12 N -0.341 5.341 13 C -0.024 4.024 14 C -0.175 4.175 15 C 0.207 3.793 16 O -0.391 6.391 17 C -0.572 4.572 18 H 0.083 0.917 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.002 4.002 26 C -0.146 4.146 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.230 0.770 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.576 1.446 -11.318 18.511 hybrid contribution 0.845 -0.803 1.073 1.584 sum -13.731 0.643 -10.245 17.144 Atomic orbital electron populations 1.21832 0.95526 1.01620 1.01423 1.21120 0.95016 0.99786 0.95138 0.91276 1.21607 0.96002 1.00340 0.97121 1.21503 0.94987 1.00998 0.97978 1.21705 1.02638 0.98030 0.93333 1.20888 0.94127 1.00384 0.93399 0.90487 1.21701 0.92718 1.02650 1.00112 1.20227 0.89591 0.78445 0.80674 1.90614 1.70528 1.43486 1.38639 1.48667 1.08993 1.53132 1.23318 1.22171 0.97702 0.94351 0.88155 1.23173 0.94807 1.00686 0.98839 1.19656 0.92326 0.81536 0.85821 1.86143 1.95708 1.33507 1.23708 1.21486 0.99652 1.41515 0.94557 0.91707 1.24991 0.97566 0.94512 0.95970 1.69725 1.34785 1.48020 1.00933 0.86370 0.83537 0.78629 0.78492 1.19580 1.20774 1.20848 1.22386 0.78655 1.01375 0.97760 1.21661 0.95040 1.00576 0.97373 0.92784 0.92942 0.92825 0.92229 0.92507 0.92395 0.92058 0.89757 0.92926 0.89328 0.89483 0.92467 0.92958 0.89573 0.91409 0.77029 0.92309 0.91182 0.91250 0.92020 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 2 C -0.09 -0.85 2.72 -90.62 -0.25 -1.10 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.11 -1.05 5.20 -26.73 -0.14 -1.19 16 5 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 6 C -0.12 -1.53 4.94 -26.73 -0.13 -1.66 16 7 C -0.07 -0.87 1.84 -90.62 -0.17 -1.03 16 8 H 0.08 1.10 7.96 -51.93 -0.41 0.69 16 9 C -0.13 -1.79 4.37 -27.88 -0.12 -1.92 16 10 C 0.52 9.63 7.57 -10.99 -0.08 9.54 16 11 O -0.55 -11.74 14.22 5.56 0.08 -11.66 16 12 N -0.61 -11.96 3.32 -170.38 -0.57 -12.52 16 13 C 0.10 1.76 6.48 -3.07 -0.02 1.74 16 14 C -0.14 -2.89 5.37 -24.90 -0.13 -3.02 16 15 C 0.25 5.92 0.87 -89.51 -0.08 5.84 16 16 O -0.58 -14.74 13.17 -35.23 -0.46 -15.20 16 17 C -0.53 -13.82 8.27 -34.44 -0.28 -14.10 16 18 H 0.06 1.69 7.79 -52.49 -0.41 1.28 16 19 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 20 N -0.90 -22.77 10.76 55.43 0.60 -22.18 16 21 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.12 2.69 6.10 -2.41 -0.01 2.67 16 26 C -0.11 -1.09 4.48 -26.73 -0.12 -1.21 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.33 5.96 -51.93 -0.31 1.02 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 1.90 7.54 -51.93 -0.39 1.51 16 41 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 42 H 0.38 9.55 7.57 45.56 0.34 9.89 16 43 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 44 H 0.07 1.53 8.04 -51.93 -0.42 1.11 16 45 H 0.07 1.66 8.03 -51.93 -0.42 1.25 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -27.58 362.31 -9.27 -36.86 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -7.91 Total: 10.13 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -1.45 Total: -5.94 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.03 Total: -34.70 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.38 Total: -26.86 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.58 -9.27 -36.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.236 kcal (2) G-P(sol) polarization free energy of solvation -27.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds