Wall clock time and date at job start Tue Mar 31 2020 07:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 C 1.52997 * 109.47232 * 240.00225 * 2 1 3 5 5 C 1.53005 * 109.47452 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47159 * 59.99536 * 5 4 2 7 7 C 1.52997 * 109.47317 * 300.00546 * 6 5 4 8 8 H 1.09002 * 109.47153 * 299.99641 * 7 6 5 9 9 C 1.53002 * 109.46817 * 179.97438 * 7 6 5 10 10 C 1.50696 * 109.47344 * 64.99877 * 9 7 6 11 11 O 1.21278 * 119.99753 * 0.02562 * 10 9 7 12 12 N 1.34771 * 120.00023 * 179.97438 * 10 9 7 13 13 C 1.47020 * 125.65083 * 0.02647 * 12 10 9 14 14 C 1.54321 * 107.27447 * 181.02038 * 13 12 10 15 15 C 1.55155 * 102.94114 * 22.19244 * 14 13 12 16 16 O 1.42898 * 111.00394 * 82.57159 * 15 14 13 17 17 C 1.50697 * 111.00594 * 206.38471 * 15 14 13 18 18 H 1.08000 * 120.00157 * 118.54863 * 17 15 14 19 19 C 1.37875 * 120.00196 * 298.54787 * 17 15 14 20 20 N 1.31515 * 120.00201 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00480 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46584 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47208 * 119.99987 * 21 19 17 24 24 H 1.48498 * 109.47119 * 240.00481 * 21 19 17 25 25 C 1.47430 * 125.64765 * 179.71618 * 12 10 9 26 26 C 1.53000 * 109.47060 * 59.99960 * 7 6 5 27 27 H 1.09000 * 109.47140 * 299.99624 * 1 2 3 28 28 H 1.09001 * 109.46922 * 59.99924 * 1 2 3 29 29 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 299.99992 * 4 2 1 31 31 H 1.09001 * 109.47289 * 60.00075 * 4 2 1 32 32 H 1.09000 * 109.47360 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.46935 * 300.00125 * 5 4 2 34 34 H 1.08996 * 109.46929 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.46716 * 60.00455 * 6 5 4 36 36 H 1.09008 * 109.46873 * 184.99985 * 9 7 6 37 37 H 1.08997 * 109.47047 * 304.99674 * 9 7 6 38 38 H 1.08995 * 109.88501 * 300.44127 * 13 12 10 39 39 H 1.09005 * 109.88076 * 61.60459 * 13 12 10 40 40 H 1.09000 * 110.72153 * 140.55915 * 14 13 12 41 41 H 1.09001 * 110.72191 * 263.65212 * 14 13 12 42 42 H 0.96708 * 113.99943 * 61.45781 * 16 15 14 43 43 H 0.96999 * 120.00324 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.36638 * 274.74568 * 25 12 10 45 45 H 1.08999 * 110.36358 * 37.07283 * 25 12 10 46 46 H 1.08992 * 109.47399 * 59.99823 * 26 7 6 47 47 H 1.09004 * 109.46724 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0806 -1.4415 -0.0004 7 6 3.5706 -0.7203 1.2489 8 1 3.9335 0.3075 1.2487 9 6 4.0807 -1.4416 2.4981 10 6 5.5825 -1.3352 2.5615 11 8 6.1855 -0.7406 1.6933 12 7 6.2555 -1.9000 3.5835 13 6 5.6531 -2.6459 4.6980 14 6 6.8016 -3.0798 5.6330 15 6 7.9287 -2.0699 5.2906 16 8 7.7468 -0.8407 5.9962 17 6 9.2862 -2.6581 5.5770 18 1 9.9990 -2.7867 4.7759 19 6 9.6185 -3.0320 6.8618 20 7 8.7504 -2.8758 7.8374 21 14 11.3010 -3.7617 7.2169 22 1 12.0852 -3.8329 5.9578 23 1 12.0151 -2.9052 8.1976 24 1 11.1400 -5.1275 7.7771 25 6 7.7183 -1.8776 3.7657 26 6 2.0406 -0.7210 1.2492 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2073 -2.1392 32 1 3.9334 -1.2341 -2.1398 33 1 3.9330 0.3072 -1.2498 34 1 5.1706 -1.4415 -0.0009 35 1 3.7176 -2.4693 -0.0002 36 1 3.6460 -0.9821 3.3859 37 1 3.7923 -2.4918 2.4544 38 1 4.9564 -2.0056 5.2390 39 1 5.1328 -3.5249 4.3174 40 1 6.5045 -2.9866 6.6776 41 1 7.1142 -4.1003 5.4120 42 1 7.7727 -0.9321 6.9586 43 1 8.9843 -3.1385 8.7414 44 1 8.1823 -2.6929 3.2106 45 1 8.1259 -0.9189 3.4449 46 1 1.6777 -1.7487 1.2494 47 1 1.6773 -0.2067 2.1390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:48 Heat of formation + Delta-G solvation = -138.905203 kcal Electronic energy + Delta-G solvation = -24748.408316 eV Core-core repulsion = 21314.606017 eV Total energy + Delta-G solvation = -3433.802299 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24051 -39.80099 -38.66762 -36.04966 -34.27294 -34.22084 -32.72594 -31.51641 -30.10995 -28.46504 -27.15016 -26.56408 -23.92801 -22.87330 -21.97715 -21.38800 -20.62857 -19.96640 -19.08399 -18.02845 -16.97250 -16.81887 -16.58633 -16.15135 -15.98405 -15.51603 -15.26532 -15.04879 -14.71843 -14.65366 -14.20574 -13.96554 -13.68334 -13.45646 -13.27071 -13.18076 -13.03091 -13.01189 -12.69289 -12.63309 -12.49954 -12.43694 -12.25466 -12.13215 -11.84892 -11.83318 -11.64930 -11.28703 -11.27103 -11.19893 -10.82601 -10.68718 -10.49604 -10.14392 -9.52387 -8.24425 -6.39099 1.40029 1.44585 1.54322 1.70294 2.12104 2.40293 3.00351 3.56915 3.71745 3.81023 3.81608 3.98084 4.06160 4.16887 4.30881 4.34959 4.37451 4.43382 4.50796 4.57427 4.61987 4.64630 4.68879 4.78966 4.81254 4.85791 4.90324 4.92593 5.00321 5.07211 5.13225 5.18221 5.24148 5.30379 5.33504 5.41150 5.45452 5.46770 5.50887 5.54703 5.59423 5.67754 5.77289 6.09084 6.63532 6.70855 7.23759 7.31140 7.39678 8.81482 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.039945 B = 0.003000 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.795672 B = 9329.983968 C = 9664.724035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.058 0.942 4 C -0.108 4.108 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.066 4.066 8 H 0.051 0.949 9 C -0.122 4.122 10 C 0.514 3.486 11 O -0.588 6.588 12 N -0.614 5.614 13 C 0.106 3.894 14 C -0.127 4.127 15 C 0.233 3.767 16 O -0.593 6.593 17 C -0.561 4.561 18 H 0.051 0.949 19 C 0.037 3.963 20 N -0.905 5.905 21 Si 0.959 3.041 22 H -0.276 1.276 23 H -0.280 1.280 24 H -0.274 1.274 25 C 0.125 3.875 26 C -0.102 4.102 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.377 0.623 43 H 0.271 0.729 44 H 0.069 0.931 45 H 0.041 0.959 46 H 0.075 0.925 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.158 -0.205 -10.394 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.077 0.923 4 C -0.145 4.145 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.085 4.085 8 H 0.070 0.930 9 C -0.161 4.161 10 C 0.305 3.695 11 O -0.470 6.470 12 N -0.347 5.347 13 C -0.016 4.016 14 C -0.165 4.165 15 C 0.193 3.807 16 O -0.401 6.401 17 C -0.600 4.600 18 H 0.070 0.930 19 C -0.164 4.164 20 N -0.544 5.544 21 Si 0.785 3.215 22 H -0.200 1.200 23 H -0.206 1.206 24 H -0.199 1.199 25 C 0.002 3.998 26 C -0.140 4.140 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.227 0.773 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.094 0.906 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.983 0.336 -11.326 20.416 hybrid contribution 1.652 -0.415 1.056 2.004 sum -15.330 -0.079 -10.270 18.453 Atomic orbital electron populations 1.21789 0.94000 1.02241 1.01949 1.21127 0.96219 0.99100 0.94741 0.92311 1.21576 0.94202 1.01064 0.97704 1.21489 0.96618 0.99975 0.97326 1.21644 1.00341 0.99089 0.94503 1.20862 0.96163 0.98677 0.92824 0.93039 1.21770 0.88409 1.04616 1.01320 1.21216 0.91591 0.77194 0.79495 1.90607 1.71748 1.44799 1.39837 1.48775 1.07673 1.53883 1.24345 1.22210 0.96453 0.95834 0.87079 1.22949 0.95010 0.99462 0.99116 1.19821 0.92803 0.81656 0.86416 1.86130 1.95775 1.34650 1.23583 1.21684 1.00728 1.42733 0.94810 0.93024 1.25588 1.00453 0.94676 0.95713 1.69778 1.35731 1.47774 1.01097 0.85499 0.79905 0.78209 0.77917 1.20035 1.20619 1.19931 1.22119 0.81027 0.99749 0.96886 1.21619 0.92491 1.01680 0.98162 0.92427 0.92361 0.92111 0.91321 0.91475 0.91954 0.93409 0.93449 0.91661 0.87501 0.86839 0.90759 0.89247 0.90602 0.92016 0.77328 0.91961 0.91326 0.94031 0.90605 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.19 71.98 0.66 -1.12 16 2 C -0.09 -1.50 2.72 -10.79 -0.03 -1.53 16 3 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.11 -1.76 5.20 30.60 0.16 -1.60 16 5 C -0.12 -2.47 5.92 30.60 0.18 -2.29 16 6 C -0.12 -2.94 4.94 30.59 0.15 -2.79 16 7 C -0.07 -1.57 1.84 -10.79 -0.02 -1.59 16 8 H 0.05 1.48 7.96 -2.39 -0.02 1.46 16 9 C -0.12 -3.02 4.37 29.85 0.13 -2.89 16 10 C 0.51 18.72 7.57 87.66 0.66 19.38 16 11 O -0.59 -25.73 14.22 -3.02 -0.04 -25.77 16 12 N -0.61 -23.78 3.32 -811.37 -2.70 -26.48 16 13 C 0.11 3.54 6.48 86.73 0.56 4.10 16 14 C -0.13 -5.28 5.37 31.78 0.17 -5.11 16 15 C 0.23 11.34 0.87 -10.07 -0.01 11.33 16 16 O -0.59 -30.58 13.17 -148.98 -1.96 -32.55 16 17 C -0.56 -29.64 8.27 25.60 0.21 -29.43 16 18 H 0.05 2.78 7.79 -2.91 -0.02 2.75 16 19 C 0.04 1.90 5.29 84.65 0.45 2.35 16 20 N -0.90 -45.84 10.76 21.45 0.23 -45.61 16 21 Si 0.96 41.15 29.54 68.60 2.03 43.18 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 C 0.13 5.77 6.10 86.93 0.53 6.30 16 26 C -0.10 -1.74 4.48 30.60 0.14 -1.61 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.54 5.96 -2.39 -0.01 1.52 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.08 3.30 7.54 -2.39 -0.02 3.28 16 41 H 0.06 2.61 8.04 -2.39 -0.02 2.59 16 42 H 0.38 19.31 7.57 -74.05 -0.56 18.75 16 43 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 44 H 0.07 3.11 8.04 -2.39 -0.02 3.09 16 45 H 0.04 2.09 8.03 -2.39 -0.02 2.07 16 46 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -60.85 362.31 1.87 -58.98 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: 0.37 Total: 34.75 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 3.95 Total: -6.50 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -2.47 Total: -72.09 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -2.01 Total: -58.31 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -60.85 1.87 -58.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.928 kcal (2) G-P(sol) polarization free energy of solvation -60.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds