Wall clock time and date at job start Tue Mar 31 2020 07:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46785 * 2 1 4 4 C 1.52996 * 109.47227 * 239.99721 * 2 1 3 5 5 C 1.52995 * 109.47443 * 300.00099 * 4 2 1 6 6 C 1.52998 * 109.47094 * 299.99874 * 5 4 2 7 7 C 1.53003 * 109.47061 * 60.00206 * 6 5 4 8 8 H 1.08998 * 109.47369 * 59.99783 * 7 6 5 9 9 C 1.52998 * 109.47061 * 179.97438 * 7 6 5 10 10 C 1.50703 * 109.47126 * 294.99709 * 9 7 6 11 11 O 1.21282 * 119.99995 * 0.02562 * 10 9 7 12 12 N 1.34774 * 119.99909 * 180.02562 * 10 9 7 13 13 C 1.47423 * 125.64935 * 0.02562 * 12 10 9 14 14 C 1.54909 * 104.83351 * 155.83866 * 13 12 10 15 15 C 1.55158 * 101.61642 * 36.99324 * 14 13 12 16 16 O 1.42898 * 110.71953 * 82.87702 * 15 14 13 17 17 C 1.50695 * 110.72412 * 206.15548 * 15 14 13 18 18 H 1.08003 * 120.00393 * 118.54262 * 17 15 14 19 19 C 1.37880 * 119.99858 * 298.54782 * 17 15 14 20 20 N 1.31509 * 119.99863 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99990 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47222 * 59.99729 * 21 19 17 23 23 H 1.48504 * 109.46982 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47088 * 299.99590 * 21 19 17 25 25 C 1.47016 * 125.64624 * 179.97438 * 12 10 9 26 26 C 1.53001 * 109.46847 * 119.99709 * 2 1 3 27 27 H 1.09002 * 109.47190 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47505 * 299.99761 * 1 2 3 29 29 H 1.09002 * 109.46835 * 60.00311 * 1 2 3 30 30 H 1.09001 * 109.46936 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.47240 * 60.00215 * 4 2 1 32 32 H 1.08999 * 109.47395 * 180.02562 * 5 4 2 33 33 H 1.08998 * 109.47004 * 59.99887 * 5 4 2 34 34 H 1.08998 * 109.47206 * 299.99890 * 6 5 4 35 35 H 1.09001 * 109.47277 * 180.02562 * 6 5 4 36 36 H 1.09006 * 109.46881 * 175.00169 * 9 7 6 37 37 H 1.08994 * 109.47172 * 54.99796 * 9 7 6 38 38 H 1.09000 * 110.36544 * 37.00287 * 13 12 10 39 39 H 1.09002 * 110.46474 * 274.72637 * 13 12 10 40 40 H 1.09002 * 111.00594 * 155.08642 * 14 13 12 41 41 H 1.09002 * 111.00655 * 278.89906 * 14 13 12 42 42 H 0.96701 * 114.00199 * 61.45895 * 16 15 14 43 43 H 0.97003 * 120.00226 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.88531 * 300.50046 * 25 12 10 45 45 H 1.08996 * 109.88671 * 61.51859 * 25 12 10 46 46 H 1.08997 * 109.47501 * 300.00532 * 26 2 1 47 47 H 1.08998 * 109.46947 * 180.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1637 -1.2492 6 6 2.0401 -2.8850 0.0000 7 6 1.5300 -2.1638 1.2493 8 1 0.4400 -2.1638 1.2493 9 6 2.0395 -2.8854 2.4985 10 6 1.4380 -4.2657 2.5617 11 8 0.6773 -4.6361 1.6928 12 7 1.7456 -5.0887 3.5837 13 6 2.6512 -4.7684 4.7021 14 6 2.2030 -5.7011 5.8549 15 6 1.8332 -6.9956 5.0836 16 8 2.9995 -7.7788 4.8221 17 6 0.8107 -7.7974 5.8468 18 1 -0.1584 -7.9912 5.4113 19 6 1.1124 -8.2836 7.1013 20 7 2.2926 -8.0481 7.6315 21 14 -0.1552 -9.2770 8.0477 22 1 -0.5151 -10.4897 7.2699 23 1 0.4114 -9.6810 9.3596 24 1 -1.3695 -8.4503 8.2659 25 6 1.2328 -6.4541 3.7684 26 6 2.0400 -0.7212 1.2493 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.1301 -0.7209 -1.2493 31 1 1.6768 -0.2075 -2.1392 32 1 1.8938 -2.6777 -2.1389 33 1 0.4401 -2.1637 -1.2492 34 1 3.1301 -2.8850 0.0001 35 1 1.6772 -3.9128 -0.0002 36 1 1.7510 -2.3224 3.3863 37 1 3.1257 -2.9639 2.4551 38 1 2.5393 -3.7241 4.9937 39 1 3.6852 -4.9758 4.4266 40 1 3.0213 -5.8818 6.5519 41 1 1.3347 -5.2931 6.3724 42 1 3.4590 -8.0782 5.6185 43 1 2.5051 -8.3904 8.5139 44 1 0.1452 -6.4353 3.8383 45 1 1.5397 -7.0817 2.9318 46 1 1.6766 -0.2074 2.1393 47 1 3.1300 -0.7208 1.2496 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:51 Heat of formation + Delta-G solvation = -118.679919 kcal Electronic energy + Delta-G solvation = -24928.999425 eV Core-core repulsion = 21496.074160 eV Total energy + Delta-G solvation = -3432.925265 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.99300 -38.79555 -37.17549 -34.30386 -33.05298 -32.23480 -31.51899 -29.81529 -28.51136 -27.14123 -26.77723 -24.84100 -22.44030 -22.29231 -21.30329 -19.67380 -18.74565 -18.52100 -17.23580 -16.47974 -15.67288 -15.55070 -14.97472 -14.96312 -14.64947 -14.30943 -14.15210 -13.89560 -13.39518 -13.15864 -12.99578 -12.68038 -12.23713 -12.13037 -11.99982 -11.79145 -11.66689 -11.41090 -11.36757 -11.34397 -11.30620 -11.05641 -10.89314 -10.85371 -10.64023 -10.51904 -10.26812 -10.13340 -10.02206 -9.97595 -9.41301 -9.14285 -8.68023 -8.24311 -7.97244 -6.29931 -4.37472 3.12003 3.21219 3.25797 3.29356 3.58268 4.25982 4.61726 4.63963 4.66288 4.93237 5.00334 5.06694 5.19538 5.28063 5.33931 5.45362 5.49301 5.56232 5.59798 5.61201 5.65232 5.74289 5.77242 5.82894 5.88614 5.92099 5.94582 5.98966 6.01762 6.18304 6.19530 6.24377 6.29503 6.32702 6.45382 6.58303 6.59708 6.70916 6.90934 6.98151 7.28599 7.33828 7.71733 8.01505 8.16338 8.64106 8.69950 9.28815 9.37732 10.77557 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.034983 B = 0.003101 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.197669 B = 9027.255725 C = 9072.244627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 H 0.065 0.935 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.070 4.070 8 H 0.080 0.920 9 C -0.133 4.133 10 C 0.521 3.479 11 O -0.553 6.553 12 N -0.610 5.610 13 C 0.095 3.905 14 C -0.135 4.135 15 C 0.247 3.753 16 O -0.585 6.585 17 C -0.535 4.535 18 H 0.063 0.937 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.903 3.097 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.123 3.877 26 C -0.110 4.110 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.382 0.618 43 H 0.268 0.732 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.936 14.876 -9.571 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.089 4.089 8 H 0.099 0.901 9 C -0.172 4.172 10 C 0.309 3.691 11 O -0.432 6.432 12 N -0.343 5.343 13 C -0.028 4.028 14 C -0.174 4.174 15 C 0.207 3.793 16 O -0.394 6.394 17 C -0.574 4.574 18 H 0.082 0.918 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.730 3.270 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.201 1.201 25 C 0.001 3.999 26 C -0.148 4.148 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.232 0.768 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.453 14.802 -10.544 18.231 hybrid contribution -0.352 -0.602 1.374 1.541 sum 1.101 14.201 -9.170 16.940 Atomic orbital electron populations 1.21962 0.95392 1.02521 1.01127 1.21062 0.95973 0.98661 0.95104 0.91656 1.21576 1.00315 0.96111 0.97158 1.21536 1.01087 0.95026 0.97941 1.21704 0.99692 1.00991 0.93336 1.20930 1.01323 0.93315 0.93351 0.90131 1.21715 1.01797 0.93607 1.00131 1.20255 0.81684 0.86550 0.80572 1.90617 1.37300 1.76895 1.38406 1.48698 1.46003 1.15986 1.23574 1.22493 0.93354 0.99142 0.87785 1.23298 1.01828 0.96468 0.95757 1.19464 0.84293 0.87525 0.88016 1.86137 1.42887 1.72809 1.37581 1.21481 1.00269 1.34452 1.01167 0.91847 1.24982 0.95735 0.95242 0.97031 1.69687 1.20740 1.45545 1.17571 0.86475 0.81268 0.80496 0.78747 1.19986 1.21108 1.20061 1.22046 0.98253 0.80683 0.98926 1.21633 1.00463 0.95253 0.97412 0.91604 0.92949 0.93143 0.92261 0.92500 0.92499 0.91727 0.92925 0.89769 0.89367 0.89420 0.92210 0.92022 0.89408 0.91499 0.76834 0.92174 0.91152 0.92271 0.92071 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.50 37.16 0.32 -1.09 16 2 C -0.09 -0.81 3.19 -90.62 -0.29 -1.10 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -1.05 5.45 -26.74 -0.15 -1.20 16 5 C -0.12 -1.29 5.65 -26.73 -0.15 -1.44 16 6 C -0.12 -1.54 4.94 -26.73 -0.13 -1.67 16 7 C -0.07 -0.87 1.56 -90.62 -0.14 -1.01 16 8 H 0.08 1.11 6.24 -51.93 -0.32 0.79 16 9 C -0.13 -1.77 4.18 -27.88 -0.12 -1.89 16 10 C 0.52 9.47 7.57 -10.99 -0.08 9.39 16 11 O -0.55 -11.56 14.29 5.56 0.08 -11.48 16 12 N -0.61 -11.94 3.33 -170.49 -0.57 -12.51 16 13 C 0.10 1.69 6.68 -2.53 -0.02 1.67 16 14 C -0.13 -2.87 5.46 -24.58 -0.13 -3.00 16 15 C 0.25 5.93 0.85 -89.91 -0.08 5.85 16 16 O -0.59 -14.59 13.08 -35.23 -0.46 -15.05 16 17 C -0.54 -13.98 8.22 -34.44 -0.28 -14.26 16 18 H 0.06 1.67 7.57 -52.48 -0.40 1.27 16 19 C 0.07 1.86 5.28 -17.82 -0.09 1.76 16 20 N -0.90 -22.78 10.69 55.43 0.59 -22.18 16 21 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 C 0.12 2.78 6.22 -3.04 -0.02 2.76 16 26 C -0.11 -1.08 4.73 -26.73 -0.13 -1.21 16 27 H 0.07 0.69 4.81 -51.93 -0.25 0.44 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.34 5.95 -51.93 -0.31 1.03 16 36 H 0.09 1.05 7.85 -51.93 -0.41 0.64 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.88 7.47 -51.93 -0.39 0.49 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.93 7.54 -51.93 -0.39 1.54 16 41 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 42 H 0.38 9.46 7.49 45.56 0.34 9.80 16 43 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 44 H 0.07 1.63 7.66 -51.93 -0.40 1.23 16 45 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -27.41 353.73 -9.02 -36.43 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -7.48 Total: 10.74 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -1.49 Total: -6.44 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.03 Total: -34.69 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.38 Total: -26.53 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.41 -9.02 -36.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.250 kcal (2) G-P(sol) polarization free energy of solvation -27.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds