Wall clock time and date at job start Tue Mar 31 2020 07:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46785 * 2 1 4 4 C 1.52996 * 109.47227 * 239.99721 * 2 1 3 5 5 C 1.52995 * 109.47443 * 300.00099 * 4 2 1 6 6 C 1.52998 * 109.47094 * 299.99874 * 5 4 2 7 7 C 1.53003 * 109.47061 * 60.00206 * 6 5 4 8 8 H 1.08998 * 109.47369 * 59.99783 * 7 6 5 9 9 C 1.52998 * 109.47061 * 179.97438 * 7 6 5 10 10 C 1.50703 * 109.47126 * 294.99709 * 9 7 6 11 11 O 1.21282 * 119.99995 * 0.02562 * 10 9 7 12 12 N 1.34774 * 119.99909 * 180.02562 * 10 9 7 13 13 C 1.47423 * 125.64935 * 0.02562 * 12 10 9 14 14 C 1.54909 * 104.83351 * 155.83866 * 13 12 10 15 15 C 1.55158 * 101.61642 * 36.99324 * 14 13 12 16 16 O 1.42898 * 110.71953 * 82.87702 * 15 14 13 17 17 C 1.50695 * 110.72412 * 206.15548 * 15 14 13 18 18 H 1.08003 * 120.00393 * 118.54262 * 17 15 14 19 19 C 1.37880 * 119.99858 * 298.54782 * 17 15 14 20 20 N 1.31509 * 119.99863 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99990 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47222 * 59.99729 * 21 19 17 23 23 H 1.48504 * 109.46982 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47088 * 299.99590 * 21 19 17 25 25 C 1.47016 * 125.64624 * 179.97438 * 12 10 9 26 26 C 1.53001 * 109.46847 * 119.99709 * 2 1 3 27 27 H 1.09002 * 109.47190 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47505 * 299.99761 * 1 2 3 29 29 H 1.09002 * 109.46835 * 60.00311 * 1 2 3 30 30 H 1.09001 * 109.46936 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.47240 * 60.00215 * 4 2 1 32 32 H 1.08999 * 109.47395 * 180.02562 * 5 4 2 33 33 H 1.08998 * 109.47004 * 59.99887 * 5 4 2 34 34 H 1.08998 * 109.47206 * 299.99890 * 6 5 4 35 35 H 1.09001 * 109.47277 * 180.02562 * 6 5 4 36 36 H 1.09006 * 109.46881 * 175.00169 * 9 7 6 37 37 H 1.08994 * 109.47172 * 54.99796 * 9 7 6 38 38 H 1.09000 * 110.36544 * 37.00287 * 13 12 10 39 39 H 1.09002 * 110.46474 * 274.72637 * 13 12 10 40 40 H 1.09002 * 111.00594 * 155.08642 * 14 13 12 41 41 H 1.09002 * 111.00655 * 278.89906 * 14 13 12 42 42 H 0.96701 * 114.00199 * 61.45895 * 16 15 14 43 43 H 0.97003 * 120.00226 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.88531 * 300.50046 * 25 12 10 45 45 H 1.08996 * 109.88671 * 61.51859 * 25 12 10 46 46 H 1.08997 * 109.47501 * 300.00532 * 26 2 1 47 47 H 1.08998 * 109.46947 * 180.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1637 -1.2492 6 6 2.0401 -2.8850 0.0000 7 6 1.5300 -2.1638 1.2493 8 1 0.4400 -2.1638 1.2493 9 6 2.0395 -2.8854 2.4985 10 6 1.4380 -4.2657 2.5617 11 8 0.6773 -4.6361 1.6928 12 7 1.7456 -5.0887 3.5837 13 6 2.6512 -4.7684 4.7021 14 6 2.2030 -5.7011 5.8549 15 6 1.8332 -6.9956 5.0836 16 8 2.9995 -7.7788 4.8221 17 6 0.8107 -7.7974 5.8468 18 1 -0.1584 -7.9912 5.4113 19 6 1.1124 -8.2836 7.1013 20 7 2.2926 -8.0481 7.6315 21 14 -0.1552 -9.2770 8.0477 22 1 -0.5151 -10.4897 7.2699 23 1 0.4114 -9.6810 9.3596 24 1 -1.3695 -8.4503 8.2659 25 6 1.2328 -6.4541 3.7684 26 6 2.0400 -0.7212 1.2493 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.1301 -0.7209 -1.2493 31 1 1.6768 -0.2075 -2.1392 32 1 1.8938 -2.6777 -2.1389 33 1 0.4401 -2.1637 -1.2492 34 1 3.1301 -2.8850 0.0001 35 1 1.6772 -3.9128 -0.0002 36 1 1.7510 -2.3224 3.3863 37 1 3.1257 -2.9639 2.4551 38 1 2.5393 -3.7241 4.9937 39 1 3.6852 -4.9758 4.4266 40 1 3.0213 -5.8818 6.5519 41 1 1.3347 -5.2931 6.3724 42 1 3.4590 -8.0782 5.6185 43 1 2.5051 -8.3904 8.5139 44 1 0.1452 -6.4353 3.8383 45 1 1.5397 -7.0817 2.9318 46 1 1.6766 -0.2074 2.1393 47 1 3.1300 -0.7208 1.2496 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:51 Heat of formation + Delta-G solvation = -134.618884 kcal Electronic energy + Delta-G solvation = -24929.690591 eV Core-core repulsion = 21496.074160 eV Total energy + Delta-G solvation = -3433.616431 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30219 -39.98939 -38.75803 -36.07681 -34.22429 -34.05362 -32.38394 -31.46162 -30.15353 -28.41356 -27.56728 -26.56462 -23.96850 -23.15324 -22.41069 -21.42533 -20.07164 -19.49798 -19.13868 -17.92549 -17.07685 -16.91574 -16.57376 -16.29575 -16.02617 -15.72104 -15.27581 -14.87568 -14.80046 -14.49651 -14.32411 -13.87580 -13.60315 -13.48083 -13.30322 -13.25908 -13.11858 -12.93965 -12.67682 -12.64326 -12.43831 -12.37830 -12.28803 -12.25170 -11.98141 -11.82774 -11.69370 -11.27307 -11.18905 -10.98995 -10.82921 -10.67115 -10.46263 -10.15137 -9.57594 -8.25491 -6.39998 1.41743 1.43536 1.50578 1.68860 2.09229 2.39331 2.99782 3.56781 3.75122 3.82618 3.85327 3.97639 4.01514 4.22135 4.27873 4.33438 4.40744 4.44249 4.53665 4.57010 4.58491 4.63399 4.67751 4.73466 4.79708 4.88418 4.89655 4.93301 5.05747 5.09713 5.16408 5.17715 5.20081 5.28164 5.35670 5.40300 5.45559 5.47406 5.52024 5.53159 5.63431 5.70676 5.75410 6.07964 6.60592 6.69482 7.22030 7.30168 7.39529 8.80192 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.034983 B = 0.003101 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.197669 B = 9027.255725 C = 9072.244627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 H 0.084 0.916 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.119 4.119 7 C -0.067 4.067 8 H 0.060 0.940 9 C -0.123 4.123 10 C 0.514 3.486 11 O -0.587 6.587 12 N -0.615 5.615 13 C 0.104 3.896 14 C -0.126 4.126 15 C 0.235 3.765 16 O -0.593 6.593 17 C -0.566 4.566 18 H 0.048 0.952 19 C 0.039 3.961 20 N -0.903 5.903 21 Si 0.958 3.042 22 H -0.279 1.279 23 H -0.276 1.276 24 H -0.273 1.273 25 C 0.129 3.871 26 C -0.104 4.104 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.380 0.620 43 H 0.272 0.728 44 H 0.054 0.946 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.963 17.397 -9.166 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 H 0.102 0.898 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.157 4.157 7 C -0.086 4.086 8 H 0.079 0.921 9 C -0.163 4.163 10 C 0.305 3.695 11 O -0.468 6.468 12 N -0.348 5.348 13 C -0.017 4.017 14 C -0.164 4.164 15 C 0.195 3.805 16 O -0.402 6.402 17 C -0.604 4.604 18 H 0.067 0.933 19 C -0.163 4.163 20 N -0.542 5.542 21 Si 0.783 3.217 22 H -0.205 1.205 23 H -0.201 1.201 24 H -0.199 1.199 25 C 0.006 3.994 26 C -0.142 4.142 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.229 0.771 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.091 0.909 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.495 17.346 -10.138 20.246 hybrid contribution -0.704 -1.451 1.198 2.009 sum 1.791 15.895 -8.940 18.325 Atomic orbital electron populations 1.21952 0.95862 1.01412 1.01771 1.21095 0.95565 0.99496 0.94570 0.89768 1.21555 1.00747 0.94535 0.97892 1.21513 1.00453 0.96448 0.97074 1.21644 1.00065 0.99126 0.94825 1.20904 1.00185 0.95047 0.92485 0.92141 1.21802 1.02627 0.90139 1.01687 1.21278 0.80973 0.87934 0.79308 1.90611 1.38820 1.77844 1.39518 1.48804 1.46490 1.14792 1.24746 1.22517 0.93153 1.00542 0.85524 1.23074 1.01066 0.95808 0.96488 1.19593 0.83674 0.88415 0.88790 1.86122 1.43174 1.73287 1.37591 1.21696 1.00448 1.36100 1.02202 0.93334 1.25564 0.97404 0.95840 0.97465 1.69737 1.21343 1.45382 1.17735 0.85625 0.79364 0.78934 0.77760 1.20455 1.20064 1.19869 1.21730 0.97319 0.82686 0.97654 1.21606 1.01177 0.93056 0.98329 0.93573 0.92500 0.92365 0.91440 0.91438 0.92402 0.92810 0.92049 0.93685 0.86902 0.87247 0.87989 0.91010 0.90171 0.92546 0.77079 0.91837 0.92765 0.94366 0.90890 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.50 71.98 0.61 -1.93 16 2 C -0.09 -1.34 3.19 -10.79 -0.03 -1.38 16 3 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 4 C -0.11 -1.75 5.45 30.59 0.17 -1.58 16 5 C -0.12 -2.48 5.65 30.59 0.17 -2.30 16 6 C -0.12 -2.98 4.94 30.59 0.15 -2.83 16 7 C -0.07 -1.54 1.56 -10.79 -0.02 -1.56 16 8 H 0.06 1.64 6.24 -2.39 -0.01 1.63 16 9 C -0.12 -2.96 4.18 29.85 0.12 -2.84 16 10 C 0.51 18.45 7.57 87.66 0.66 19.11 16 11 O -0.59 -25.29 14.29 -3.03 -0.04 -25.33 16 12 N -0.62 -23.84 3.33 -811.70 -2.70 -26.53 16 13 C 0.10 3.49 6.68 86.86 0.58 4.07 16 14 C -0.13 -5.28 5.46 31.99 0.17 -5.11 16 15 C 0.24 11.49 0.85 -10.33 -0.01 11.48 16 16 O -0.59 -30.09 13.08 -148.98 -1.95 -32.04 16 17 C -0.57 -30.30 8.22 25.60 0.21 -30.09 16 18 H 0.05 2.66 7.57 -2.91 -0.02 2.63 16 19 C 0.04 2.00 5.28 84.66 0.45 2.45 16 20 N -0.90 -45.71 10.69 21.45 0.23 -45.48 16 21 Si 0.96 41.41 29.54 68.60 2.03 43.43 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 25 C 0.13 6.06 6.22 86.75 0.54 6.60 16 26 C -0.10 -1.68 4.73 30.60 0.14 -1.54 16 27 H 0.05 0.95 4.81 -2.39 -0.01 0.94 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.24 6.43 -2.39 -0.02 1.22 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.04 1.48 5.95 -2.39 -0.01 1.47 16 36 H 0.11 2.22 7.85 -2.38 -0.02 2.20 16 37 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.10 2.59 7.47 -2.39 -0.02 2.57 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.08 3.48 7.54 -2.39 -0.02 3.46 16 41 H 0.06 2.45 8.04 -2.39 -0.02 2.44 16 42 H 0.38 19.11 7.49 -74.06 -0.55 18.55 16 43 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 44 H 0.05 2.65 7.66 -2.39 -0.02 2.64 16 45 H 0.04 1.90 8.07 -2.39 -0.02 1.88 16 46 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -60.83 353.73 1.88 -58.95 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: 0.39 Total: 34.45 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 3.93 Total: -7.44 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -2.47 Total: -72.01 kcal Atomic # 8 Polarization: -55.38 SS G_CDS: -1.99 Total: -57.37 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -60.83 1.88 -58.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.673 kcal (2) G-P(sol) polarization free energy of solvation -60.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds