Wall clock time and date at job start Tue Mar 31 2020 07:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47690 * 2 1 4 4 C 1.53008 * 109.46764 * 240.00143 * 2 1 3 5 5 C 1.52996 * 109.47493 * 300.00080 * 4 2 1 6 6 C 1.53001 * 109.46879 * 300.00417 * 5 4 2 7 7 C 1.52997 * 109.47687 * 59.99640 * 6 5 4 8 8 H 1.09001 * 109.47159 * 59.99750 * 7 6 5 9 9 C 1.52995 * 109.47437 * 179.97438 * 7 6 5 10 10 C 1.50693 * 109.47704 * 295.00320 * 9 7 6 11 11 O 1.21290 * 119.99670 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00251 * 179.97438 * 10 9 7 13 13 C 1.47418 * 125.65031 * 0.02562 * 12 10 9 14 14 C 1.54908 * 104.83443 * 204.09514 * 13 12 10 15 15 C 1.55158 * 101.58235 * 322.99091 * 14 13 12 16 16 O 1.42903 * 110.72029 * 277.14056 * 15 14 13 17 17 C 1.50699 * 110.71988 * 154.04101 * 15 14 13 18 18 H 1.07997 * 120.00286 * 238.12246 * 17 15 14 19 19 C 1.37878 * 119.99596 * 58.12701 * 17 15 14 20 20 N 1.31513 * 120.00522 * 6.08593 * 19 17 15 21 21 Si 1.86805 * 119.99543 * 186.08452 * 19 17 15 22 22 H 1.48500 * 109.46682 * 94.99110 * 21 19 17 23 23 H 1.48495 * 109.47304 * 214.98702 * 21 19 17 24 24 H 1.48497 * 109.47571 * 334.99116 * 21 19 17 25 25 C 1.47028 * 125.64608 * 179.71764 * 12 10 9 26 26 C 1.52995 * 109.47119 * 120.00723 * 2 1 3 27 27 H 1.09003 * 109.46732 * 299.99910 * 1 2 3 28 28 H 1.09001 * 109.47427 * 59.99630 * 1 2 3 29 29 H 1.08999 * 109.47230 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47156 * 60.00684 * 4 2 1 31 31 H 1.09005 * 109.46954 * 179.97438 * 4 2 1 32 32 H 1.08987 * 109.47312 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.46727 * 59.99908 * 5 4 2 34 34 H 1.09001 * 109.47025 * 299.99309 * 6 5 4 35 35 H 1.08999 * 109.46972 * 179.97438 * 6 5 4 36 36 H 1.09007 * 109.46738 * 55.00159 * 9 7 6 37 37 H 1.09002 * 109.47030 * 174.99739 * 9 7 6 38 38 H 1.08998 * 110.36793 * 322.93521 * 13 12 10 39 39 H 1.08999 * 110.36922 * 85.25445 * 13 12 10 40 40 H 1.09004 * 111.00350 * 81.06578 * 14 13 12 41 41 H 1.09001 * 111.00168 * 204.91653 * 14 13 12 42 42 H 0.96703 * 113.99928 * 298.54521 * 16 15 14 43 43 H 0.96991 * 120.00275 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.87994 * 298.38918 * 25 12 10 45 45 H 1.09004 * 109.88156 * 59.55941 * 25 12 10 46 46 H 1.09009 * 109.47327 * 180.02562 * 26 2 1 47 47 H 1.09003 * 109.46802 * 299.99325 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 1.5299 -2.1637 -1.2495 6 6 2.0399 -2.8850 -0.0002 7 6 1.5300 -2.1639 1.2491 8 1 0.4400 -2.1638 1.2491 9 6 2.0394 -2.8855 2.4983 10 6 1.4381 -4.2658 2.5614 11 8 0.6766 -4.6358 1.6930 12 7 1.7466 -5.0892 3.5829 13 6 2.6531 -4.7694 4.7006 14 6 3.1512 -6.1438 5.2130 15 6 1.8781 -7.0161 5.0527 16 8 1.0049 -6.8465 6.1712 17 6 2.2445 -8.4676 4.8800 18 1 1.9268 -9.0035 3.9978 19 6 2.9853 -9.1115 5.8483 20 7 3.2701 -8.4968 6.9755 21 14 3.5843 -10.8571 5.5591 22 1 4.9694 -10.8228 5.0247 23 1 3.5670 -11.6053 6.8417 24 1 2.6930 -11.5307 4.5809 25 6 1.2297 -6.4528 3.7704 26 6 2.0399 -0.7214 1.2491 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6766 -0.2073 -2.1393 31 1 3.1299 -0.7209 -1.2496 32 1 1.8935 -2.6776 -2.1391 33 1 0.4399 -2.1636 -1.2494 34 1 3.1299 -2.8851 -0.0003 35 1 1.6762 -3.9125 0.0000 36 1 3.1258 -2.9641 2.4547 37 1 1.7512 -2.3226 3.3860 38 1 3.4920 -4.1689 4.3488 39 1 2.1133 -4.2438 5.4884 40 1 3.9639 -6.5210 4.5922 41 1 3.4551 -6.0844 6.2581 42 1 1.3923 -7.1124 7.0164 43 1 3.7909 -8.9499 7.6569 44 1 0.1458 -6.4263 3.8815 45 1 1.5020 -7.0731 2.9164 46 1 3.1300 -0.7210 1.2494 47 1 1.6767 -0.2075 2.1391 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842391.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:54 Heat of formation + Delta-G solvation = -118.743698 kcal Electronic energy + Delta-G solvation = -24944.371459 eV Core-core repulsion = 21511.443429 eV Total energy + Delta-G solvation = -3432.928031 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.99473 -38.79725 -37.17684 -34.29221 -33.05403 -32.24831 -31.51858 -29.80867 -28.51276 -27.14109 -26.77677 -24.84884 -22.44162 -22.29261 -21.30382 -19.68456 -18.74754 -18.52497 -17.21945 -16.47444 -15.72786 -15.38991 -15.19215 -14.94895 -14.57476 -14.26548 -14.06706 -13.88763 -13.71191 -13.03125 -12.87540 -12.68211 -12.31366 -12.13377 -11.94312 -11.84425 -11.61473 -11.45221 -11.43969 -11.35555 -11.26821 -11.05798 -10.90642 -10.85066 -10.63874 -10.48957 -10.25819 -10.11749 -10.04198 -9.97404 -9.42328 -9.15003 -8.66114 -8.23686 -7.97609 -6.31024 -4.37502 3.11770 3.18475 3.26593 3.30865 3.57988 4.25781 4.61701 4.63971 4.66247 4.93386 4.99568 5.07080 5.19258 5.27934 5.33959 5.44785 5.51169 5.53494 5.59279 5.60586 5.67320 5.73618 5.76176 5.82549 5.89712 5.91793 5.94199 5.98876 6.01399 6.18696 6.19335 6.24098 6.28882 6.32907 6.45401 6.58139 6.59673 6.70690 6.90118 6.97520 7.27542 7.34212 7.71439 8.02078 8.16005 8.64690 8.69789 9.28095 9.39586 10.76850 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.032967 B = 0.003186 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.138963 B = 8786.660437 C = 9051.861257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 H 0.065 0.935 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.070 4.070 8 H 0.080 0.920 9 C -0.133 4.133 10 C 0.521 3.479 11 O -0.553 6.553 12 N -0.610 5.610 13 C 0.095 3.905 14 C -0.135 4.135 15 C 0.246 3.754 16 O -0.587 6.587 17 C -0.535 4.535 18 H 0.064 0.936 19 C 0.073 3.927 20 N -0.895 5.895 21 Si 0.902 3.098 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.123 3.877 26 C -0.110 4.110 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.382 0.618 43 H 0.268 0.732 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.894 15.423 -8.884 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.089 4.089 8 H 0.098 0.902 9 C -0.173 4.173 10 C 0.309 3.691 11 O -0.432 6.432 12 N -0.343 5.343 13 C -0.027 4.027 14 C -0.174 4.174 15 C 0.206 3.794 16 O -0.395 6.395 17 C -0.573 4.573 18 H 0.082 0.918 19 C -0.130 4.130 20 N -0.534 5.534 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.196 1.196 25 C 0.001 3.999 26 C -0.148 4.148 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.232 0.768 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.160 15.465 -9.693 18.253 hybrid contribution 0.941 -1.123 0.540 1.561 sum 1.101 14.342 -9.154 17.050 Atomic orbital electron populations 1.21960 0.95397 1.02517 1.01122 1.21061 0.95969 0.98661 0.95107 0.91658 1.21580 1.00322 0.96116 0.97152 1.21536 1.01078 0.95022 0.97953 1.21705 0.99704 1.01001 0.93316 1.20927 1.01312 0.93318 0.93359 0.90151 1.21714 1.01793 0.93588 1.00156 1.20255 0.81691 0.86494 0.80619 1.90619 1.37254 1.76832 1.38503 1.48703 1.46006 1.16034 1.23528 1.22488 0.92022 0.99822 0.88411 1.23284 1.00122 0.92003 1.01970 1.19500 0.84743 0.92717 0.82424 1.86143 1.45265 1.88891 1.19241 1.21513 1.34056 0.95488 1.06279 0.91774 1.24981 0.94894 0.98546 0.94567 1.69698 1.39327 1.38111 1.06241 0.86413 0.79127 0.83678 0.77851 1.20506 1.21032 1.19648 1.22036 0.98339 0.80829 0.98694 1.21633 1.00465 0.95255 0.97407 0.92957 0.93142 0.91605 0.92501 0.92257 0.92490 0.91735 0.92905 0.89746 0.89390 0.89399 0.92176 0.92011 0.91511 0.89412 0.76813 0.92238 0.92253 0.91115 0.92028 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.50 37.15 0.32 -1.09 16 2 C -0.09 -0.81 3.20 -90.62 -0.29 -1.10 16 3 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -1.06 5.45 -26.73 -0.15 -1.20 16 5 C -0.12 -1.29 5.65 -26.73 -0.15 -1.44 16 6 C -0.12 -1.53 4.95 -26.73 -0.13 -1.67 16 7 C -0.07 -0.86 1.56 -90.63 -0.14 -1.01 16 8 H 0.08 1.11 6.24 -51.93 -0.32 0.78 16 9 C -0.13 -1.77 4.18 -27.89 -0.12 -1.88 16 10 C 0.52 9.46 7.57 -10.99 -0.08 9.38 16 11 O -0.55 -11.55 14.29 5.55 0.08 -11.47 16 12 N -0.61 -11.93 3.33 -170.52 -0.57 -12.49 16 13 C 0.10 1.69 6.68 -2.53 -0.02 1.67 16 14 C -0.14 -2.87 5.43 -24.58 -0.13 -3.00 16 15 C 0.25 5.90 0.85 -89.93 -0.08 5.82 16 16 O -0.59 -14.63 13.06 -35.23 -0.46 -15.09 16 17 C -0.54 -13.96 8.22 -34.44 -0.28 -14.25 16 18 H 0.06 1.69 7.63 -52.49 -0.40 1.29 16 19 C 0.07 1.86 5.24 -17.82 -0.09 1.76 16 20 N -0.89 -22.72 10.71 55.43 0.59 -22.12 16 21 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.12 2.78 6.23 -3.05 -0.02 2.76 16 26 C -0.11 -1.08 4.73 -26.74 -0.13 -1.20 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.69 4.81 -51.93 -0.25 0.44 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.59 8.14 -51.94 -0.42 0.17 16 33 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.34 5.95 -51.93 -0.31 1.03 16 36 H 0.09 1.06 7.85 -51.93 -0.41 0.65 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.89 7.48 -51.93 -0.39 0.50 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 41 H 0.09 1.93 7.53 -51.93 -0.39 1.54 16 42 H 0.38 9.48 7.52 45.56 0.34 9.82 16 43 H 0.27 6.52 8.31 -40.82 -0.34 6.19 16 44 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 45 H 0.07 1.64 7.69 -51.93 -0.40 1.24 16 46 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -27.42 353.78 -9.02 -36.44 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -7.48 Total: 10.73 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.49 Total: -6.45 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.03 Total: -34.62 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.38 Total: -26.56 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.42 -9.02 -36.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842391.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.306 kcal (2) G-P(sol) polarization free energy of solvation -27.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds