Wall clock time and date at job start Tue Mar 31 2020 07:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47690 * 2 1 4 4 C 1.53008 * 109.46764 * 240.00143 * 2 1 3 5 5 C 1.52996 * 109.47493 * 300.00080 * 4 2 1 6 6 C 1.53001 * 109.46879 * 300.00417 * 5 4 2 7 7 C 1.52997 * 109.47687 * 59.99640 * 6 5 4 8 8 H 1.09001 * 109.47159 * 59.99750 * 7 6 5 9 9 C 1.52995 * 109.47437 * 179.97438 * 7 6 5 10 10 C 1.50693 * 109.47704 * 295.00320 * 9 7 6 11 11 O 1.21290 * 119.99670 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00251 * 179.97438 * 10 9 7 13 13 C 1.47418 * 125.65031 * 0.02562 * 12 10 9 14 14 C 1.54908 * 104.83443 * 204.09514 * 13 12 10 15 15 C 1.55158 * 101.58235 * 322.99091 * 14 13 12 16 16 O 1.42903 * 110.72029 * 277.14056 * 15 14 13 17 17 C 1.50699 * 110.71988 * 154.04101 * 15 14 13 18 18 H 1.07997 * 120.00286 * 238.12246 * 17 15 14 19 19 C 1.37878 * 119.99596 * 58.12701 * 17 15 14 20 20 N 1.31513 * 120.00522 * 6.08593 * 19 17 15 21 21 Si 1.86805 * 119.99543 * 186.08452 * 19 17 15 22 22 H 1.48500 * 109.46682 * 94.99110 * 21 19 17 23 23 H 1.48495 * 109.47304 * 214.98702 * 21 19 17 24 24 H 1.48497 * 109.47571 * 334.99116 * 21 19 17 25 25 C 1.47028 * 125.64608 * 179.71764 * 12 10 9 26 26 C 1.52995 * 109.47119 * 120.00723 * 2 1 3 27 27 H 1.09003 * 109.46732 * 299.99910 * 1 2 3 28 28 H 1.09001 * 109.47427 * 59.99630 * 1 2 3 29 29 H 1.08999 * 109.47230 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47156 * 60.00684 * 4 2 1 31 31 H 1.09005 * 109.46954 * 179.97438 * 4 2 1 32 32 H 1.08987 * 109.47312 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.46727 * 59.99908 * 5 4 2 34 34 H 1.09001 * 109.47025 * 299.99309 * 6 5 4 35 35 H 1.08999 * 109.46972 * 179.97438 * 6 5 4 36 36 H 1.09007 * 109.46738 * 55.00159 * 9 7 6 37 37 H 1.09002 * 109.47030 * 174.99739 * 9 7 6 38 38 H 1.08998 * 110.36793 * 322.93521 * 13 12 10 39 39 H 1.08999 * 110.36922 * 85.25445 * 13 12 10 40 40 H 1.09004 * 111.00350 * 81.06578 * 14 13 12 41 41 H 1.09001 * 111.00168 * 204.91653 * 14 13 12 42 42 H 0.96703 * 113.99928 * 298.54521 * 16 15 14 43 43 H 0.96991 * 120.00275 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.87994 * 298.38918 * 25 12 10 45 45 H 1.09004 * 109.88156 * 59.55941 * 25 12 10 46 46 H 1.09009 * 109.47327 * 180.02562 * 26 2 1 47 47 H 1.09003 * 109.46802 * 299.99325 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 1.5299 -2.1637 -1.2495 6 6 2.0399 -2.8850 -0.0002 7 6 1.5300 -2.1639 1.2491 8 1 0.4400 -2.1638 1.2491 9 6 2.0394 -2.8855 2.4983 10 6 1.4381 -4.2658 2.5614 11 8 0.6766 -4.6358 1.6930 12 7 1.7466 -5.0892 3.5829 13 6 2.6531 -4.7694 4.7006 14 6 3.1512 -6.1438 5.2130 15 6 1.8781 -7.0161 5.0527 16 8 1.0049 -6.8465 6.1712 17 6 2.2445 -8.4676 4.8800 18 1 1.9268 -9.0035 3.9978 19 6 2.9853 -9.1115 5.8483 20 7 3.2701 -8.4968 6.9755 21 14 3.5843 -10.8571 5.5591 22 1 4.9694 -10.8228 5.0247 23 1 3.5670 -11.6053 6.8417 24 1 2.6930 -11.5307 4.5809 25 6 1.2297 -6.4528 3.7704 26 6 2.0399 -0.7214 1.2491 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6766 -0.2073 -2.1393 31 1 3.1299 -0.7209 -1.2496 32 1 1.8935 -2.6776 -2.1391 33 1 0.4399 -2.1636 -1.2494 34 1 3.1299 -2.8851 -0.0003 35 1 1.6762 -3.9125 0.0000 36 1 3.1258 -2.9641 2.4547 37 1 1.7512 -2.3226 3.3860 38 1 3.4920 -4.1689 4.3488 39 1 2.1133 -4.2438 5.4884 40 1 3.9639 -6.5210 4.5922 41 1 3.4551 -6.0844 6.2581 42 1 1.3923 -7.1124 7.0164 43 1 3.7909 -8.9499 7.6569 44 1 0.1458 -6.4263 3.8815 45 1 1.5020 -7.0731 2.9164 46 1 3.1300 -0.7210 1.2494 47 1 1.6767 -0.2075 2.1391 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842391.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:53 Heat of formation + Delta-G solvation = -134.697023 kcal Electronic energy + Delta-G solvation = -24945.063248 eV Core-core repulsion = 21511.443429 eV Total energy + Delta-G solvation = -3433.619819 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.30310 -39.99004 -38.75718 -36.06437 -34.23815 -34.05352 -32.38254 -31.45382 -30.15342 -28.41420 -27.56697 -26.57050 -23.96993 -23.15103 -22.41003 -21.43469 -20.07271 -19.51329 -19.10744 -17.92952 -17.03952 -16.91502 -16.60521 -16.35332 -16.03259 -15.58496 -15.26168 -15.04513 -14.79988 -14.57169 -14.04493 -13.84601 -13.75323 -13.53316 -13.27020 -13.24625 -13.16860 -12.93868 -12.66057 -12.63545 -12.44993 -12.36388 -12.28636 -12.25912 -11.97436 -11.82759 -11.68889 -11.28643 -11.18975 -10.99489 -10.82698 -10.63772 -10.46668 -10.14916 -9.57749 -8.26524 -6.40107 1.39796 1.43344 1.52365 1.68792 2.09086 2.39235 2.99308 3.56501 3.75298 3.83053 3.84786 3.97991 4.01739 4.21777 4.27768 4.32813 4.39558 4.45331 4.53714 4.56157 4.59189 4.64955 4.67028 4.71569 4.80879 4.88431 4.89657 4.92971 5.05745 5.09707 5.16424 5.17440 5.20158 5.28029 5.35697 5.40642 5.45823 5.47790 5.51504 5.52242 5.63696 5.70686 5.75010 6.08564 6.60819 6.69442 7.21979 7.29346 7.41424 8.79752 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.032967 B = 0.003186 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.138963 B = 8786.660437 C = 9051.861257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 H 0.084 0.916 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.067 4.067 8 H 0.060 0.940 9 C -0.123 4.123 10 C 0.514 3.486 11 O -0.587 6.587 12 N -0.615 5.615 13 C 0.105 3.895 14 C -0.126 4.126 15 C 0.234 3.766 16 O -0.594 6.594 17 C -0.566 4.566 18 H 0.047 0.953 19 C 0.040 3.960 20 N -0.902 5.902 21 Si 0.957 3.043 22 H -0.272 1.272 23 H -0.278 1.278 24 H -0.279 1.279 25 C 0.129 3.871 26 C -0.104 4.104 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.380 0.620 43 H 0.272 0.728 44 H 0.038 0.962 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 17.698 -8.864 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 H 0.102 0.898 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.156 4.156 7 C -0.086 4.086 8 H 0.078 0.922 9 C -0.163 4.163 10 C 0.305 3.695 11 O -0.468 6.468 12 N -0.348 5.348 13 C -0.017 4.017 14 C -0.165 4.165 15 C 0.195 3.805 16 O -0.403 6.403 17 C -0.604 4.604 18 H 0.066 0.934 19 C -0.162 4.162 20 N -0.541 5.541 21 Si 0.783 3.217 22 H -0.198 1.198 23 H -0.203 1.203 24 H -0.204 1.204 25 C 0.006 3.994 26 C -0.142 4.142 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.229 0.771 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.853 17.765 -9.668 20.311 hybrid contribution 0.351 -1.885 0.509 1.983 sum 2.204 15.881 -9.160 18.465 Atomic orbital electron populations 1.21950 0.95870 1.01405 1.01766 1.21094 0.95561 0.99495 0.94573 0.89771 1.21559 1.00753 0.94545 0.97882 1.21513 1.00442 0.96445 0.97100 1.21644 1.00094 0.99136 0.94767 1.20901 1.00156 0.95054 0.92507 0.92205 1.21800 1.02692 0.90108 1.01652 1.21279 0.81015 0.87884 0.79310 1.90613 1.38789 1.77793 1.39596 1.48807 1.46493 1.14892 1.24642 1.22516 0.92946 0.98128 0.88115 1.23064 0.98351 0.93581 1.01472 1.19629 0.86007 0.92544 0.82361 1.86129 1.45924 1.88856 1.19398 1.21704 1.35358 0.97005 1.06330 0.93440 1.25557 0.94714 1.01599 0.94336 1.69745 1.38954 1.39049 1.06312 0.85561 0.78622 0.79847 0.77677 1.19753 1.20311 1.20387 1.21718 0.97084 0.82908 0.97671 1.21606 1.01192 0.93061 0.98310 0.92509 0.92362 0.93580 0.91452 0.91433 0.92403 0.92829 0.91989 0.93641 0.87081 0.87064 0.87981 0.90970 0.92535 0.90159 0.77071 0.91828 0.94338 0.92763 0.90702 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.50 71.98 0.61 -1.93 16 2 C -0.09 -1.34 3.20 -10.79 -0.03 -1.38 16 3 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 4 C -0.11 -1.75 5.45 30.60 0.17 -1.58 16 5 C -0.12 -2.48 5.65 30.59 0.17 -2.30 16 6 C -0.12 -2.97 4.95 30.59 0.15 -2.82 16 7 C -0.07 -1.54 1.56 -10.80 -0.02 -1.56 16 8 H 0.06 1.63 6.24 -2.39 -0.01 1.61 16 9 C -0.12 -2.96 4.18 29.84 0.12 -2.83 16 10 C 0.51 18.43 7.57 87.65 0.66 19.09 16 11 O -0.59 -25.27 14.29 -3.06 -0.04 -25.32 16 12 N -0.62 -23.81 3.33 -811.78 -2.70 -26.51 16 13 C 0.10 3.49 6.68 86.86 0.58 4.07 16 14 C -0.13 -5.29 5.43 31.99 0.17 -5.11 16 15 C 0.23 11.45 0.85 -10.35 -0.01 11.45 16 16 O -0.59 -30.18 13.06 -148.98 -1.95 -32.13 16 17 C -0.57 -30.29 8.22 25.60 0.21 -30.08 16 18 H 0.05 2.62 7.63 -2.91 -0.02 2.60 16 19 C 0.04 2.04 5.24 84.66 0.44 2.49 16 20 N -0.90 -45.57 10.71 21.45 0.23 -45.34 16 21 Si 0.96 41.35 29.54 68.60 2.03 43.38 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 C 0.13 6.06 6.23 86.73 0.54 6.60 16 26 C -0.10 -1.68 4.73 30.59 0.14 -1.54 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.95 4.81 -2.39 -0.01 0.94 16 30 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.23 6.43 -2.39 -0.02 1.22 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.04 1.49 5.95 -2.39 -0.01 1.48 16 36 H 0.11 2.22 7.85 -2.38 -0.02 2.20 16 37 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.10 2.59 7.48 -2.39 -0.02 2.57 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.06 2.45 8.04 -2.39 -0.02 2.43 16 41 H 0.08 3.47 7.53 -2.39 -0.02 3.46 16 42 H 0.38 19.14 7.52 -74.06 -0.56 18.58 16 43 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 44 H 0.04 1.91 8.07 -2.39 -0.02 1.89 16 45 H 0.05 2.66 7.69 -2.39 -0.02 2.64 16 46 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 47 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -60.88 353.78 1.88 -58.99 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: 0.39 Total: 34.36 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 3.92 Total: -7.43 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -2.47 Total: -71.85 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -1.99 Total: -57.44 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -60.88 1.88 -58.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842391.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.702 kcal (2) G-P(sol) polarization free energy of solvation -60.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds