Wall clock time and date at job start Tue Mar 31 2020 07:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46991 * 2 1 4 4 C 1.53003 * 109.47184 * 239.99682 * 2 1 3 5 5 C 1.52994 * 109.47044 * 175.32921 * 4 2 1 6 6 C 1.54270 * 110.03423 * 291.49580 * 5 4 2 7 7 C 1.54890 * 104.19209 * 217.10760 * 6 5 4 8 8 C 1.54887 * 102.75112 * 37.94140 * 7 6 5 9 9 C 1.53879 * 110.03029 * 174.32965 * 5 4 2 10 10 C 1.50699 * 109.46690 * 119.99900 * 2 1 3 11 11 O 1.21284 * 119.99942 * 85.09648 * 10 2 1 12 12 N 1.34773 * 119.99961 * 265.08646 * 10 2 1 13 13 C 1.47427 * 125.64948 * 355.71229 * 12 10 2 14 14 C 1.54919 * 104.83018 * 155.82144 * 13 12 10 15 15 C 1.55153 * 101.58207 * 37.00961 * 14 13 12 16 16 O 1.42902 * 110.71928 * 82.86082 * 15 14 13 17 17 C 1.50699 * 110.72175 * 205.95401 * 15 14 13 18 18 H 1.07994 * 119.99844 * 116.15612 * 17 15 14 19 19 C 1.37875 * 119.99983 * 296.16313 * 17 15 14 20 20 N 1.31518 * 120.00244 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00085 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46984 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47511 * 119.99519 * 21 19 17 24 24 H 1.48500 * 109.46965 * 239.99893 * 21 19 17 25 25 C 1.47026 * 125.64621 * 175.65617 * 12 10 2 26 26 H 1.08994 * 109.46987 * 305.42660 * 1 2 3 27 27 H 1.08999 * 109.46732 * 65.42570 * 1 2 3 28 28 H 1.08994 * 109.46688 * 185.42371 * 1 2 3 29 29 H 1.08992 * 109.47062 * 295.33488 * 4 2 1 30 30 H 1.09000 * 109.46800 * 55.33161 * 4 2 1 31 31 H 1.08995 * 110.01613 * 52.93638 * 5 4 2 32 32 H 1.08997 * 110.48370 * 335.78261 * 6 5 4 33 33 H 1.08997 * 110.48805 * 98.42728 * 6 5 4 34 34 H 1.09002 * 110.75616 * 279.62104 * 7 6 5 35 35 H 1.09006 * 110.75422 * 156.25507 * 7 6 5 36 36 H 1.09002 * 110.48432 * 203.37638 * 8 7 6 37 37 H 1.08998 * 110.48917 * 80.73969 * 8 7 6 38 38 H 1.09008 * 110.02598 * 238.57152 * 9 5 4 39 39 H 1.08993 * 110.03209 * 359.94982 * 9 5 4 40 40 H 1.09002 * 110.36527 * 36.98829 * 13 12 10 41 41 H 1.08997 * 110.45996 * 274.70668 * 13 12 10 42 42 H 1.08999 * 111.00140 * 278.93565 * 14 13 12 43 43 H 1.08995 * 111.02977 * 155.10097 * 14 13 12 44 44 H 0.96705 * 114.00067 * 61.44991 * 16 15 14 45 45 H 0.96991 * 119.99975 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.88340 * 61.69426 * 25 12 10 47 47 H 1.08994 * 109.88264 * 300.52325 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5655 -0.6204 -1.3093 6 6 3.9884 0.8381 -1.5813 7 6 5.2191 0.7092 -2.5129 8 6 4.8345 -0.4824 -3.4246 9 6 4.1035 -1.4599 -2.4813 10 6 2.0323 -0.7104 1.2305 11 8 2.1498 -1.9175 1.2283 12 7 2.3511 -0.0043 2.3333 13 6 2.3420 1.4657 2.4448 14 6 2.1574 1.7475 3.9569 15 6 2.9979 0.6079 4.5911 16 8 4.3816 0.9625 4.6312 17 6 2.4936 0.2788 5.9725 18 1 2.0797 -0.6973 6.1779 19 6 2.5606 1.2239 6.9741 20 7 3.0650 2.4125 6.7242 21 14 1.9348 0.8162 8.6863 22 1 1.4192 -0.5763 8.7063 23 1 3.0453 0.9473 9.6635 24 1 0.8420 1.7535 9.0501 25 6 2.7646 -0.5725 3.6247 26 1 -0.3633 0.5957 0.8374 27 1 -0.3633 0.4274 -0.9346 28 1 -0.3632 -1.0230 0.0971 29 1 1.7467 -1.7702 -1.2083 30 1 1.6101 -0.2581 -2.1372 31 1 3.9996 -0.9670 -0.3715 32 1 3.1864 1.3807 -2.0817 33 1 4.2642 1.3351 -0.6513 34 1 6.1167 0.4817 -1.9378 35 1 5.3554 1.6171 -3.1006 36 1 5.7279 -0.9489 -3.8397 37 1 4.1692 -0.1529 -4.2226 38 1 4.7994 -2.2134 -2.1122 39 1 3.2780 -1.9399 -3.0067 40 1 1.5110 1.8841 1.8768 41 1 3.2871 1.8803 2.0943 42 1 1.1091 1.6663 4.2443 43 1 2.5591 2.7248 4.2245 44 1 4.5714 1.7470 5.1638 45 1 3.1117 3.0774 7.4287 46 1 3.6876 -1.1391 3.5020 47 1 1.9786 -1.2199 4.0135 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:36 Heat of formation + Delta-G solvation = -135.046013 kcal Electronic energy + Delta-G solvation = -25295.651809 eV Core-core repulsion = 21862.016857 eV Total energy + Delta-G solvation = -3433.634952 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37759 -39.58406 -38.69793 -36.11135 -35.25503 -34.20164 -31.51113 -30.68949 -30.04286 -29.54271 -27.26116 -26.05110 -24.55307 -23.12077 -21.60628 -21.38149 -20.57892 -19.72246 -19.16621 -18.27890 -17.16890 -16.94280 -16.53515 -16.34539 -16.12812 -15.81136 -15.46383 -14.93274 -14.69301 -14.21444 -14.05733 -14.03582 -13.87486 -13.56734 -13.25542 -13.15426 -13.07965 -12.95462 -12.73508 -12.69222 -12.46031 -12.33232 -12.26838 -12.00140 -11.93726 -11.86578 -11.50317 -11.46569 -11.34125 -11.30204 -11.18267 -10.76794 -10.59339 -10.15673 -9.62285 -8.26811 -6.40729 1.38824 1.43248 1.53178 1.64940 2.06153 2.38790 2.98668 3.49189 3.61254 3.75692 3.79711 3.86913 3.98316 4.03716 4.20269 4.25950 4.34275 4.44076 4.52929 4.56615 4.58028 4.64592 4.65801 4.69784 4.78161 4.83879 4.86938 4.91202 4.96134 4.98802 5.11275 5.12009 5.14547 5.21128 5.24652 5.31003 5.32879 5.44023 5.45420 5.50194 5.50578 5.55804 5.74594 6.06418 6.59261 6.66769 7.18144 7.29773 7.40696 8.79849 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.025416 B = 0.003762 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.383555 B = 7441.134089 C = 7821.426780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 H 0.106 0.894 4 C -0.089 4.089 5 C -0.097 4.097 6 C -0.119 4.119 7 C -0.126 4.126 8 C -0.117 4.117 9 C -0.120 4.120 10 C 0.523 3.477 11 O -0.594 6.594 12 N -0.613 5.613 13 C 0.105 3.895 14 C -0.125 4.125 15 C 0.236 3.764 16 O -0.594 6.594 17 C -0.564 4.564 18 H 0.049 0.951 19 C 0.039 3.961 20 N -0.905 5.905 21 Si 0.959 3.041 22 H -0.277 1.277 23 H -0.278 1.278 24 H -0.273 1.273 25 C 0.128 3.872 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.028 0.972 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.381 0.619 45 H 0.273 0.727 46 H 0.035 0.965 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 2.665 -18.432 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 H 0.124 0.876 4 C -0.126 4.126 5 C -0.116 4.116 6 C -0.156 4.156 7 C -0.164 4.164 8 C -0.155 4.155 9 C -0.158 4.158 10 C 0.314 3.686 11 O -0.476 6.476 12 N -0.345 5.345 13 C -0.016 4.016 14 C -0.164 4.164 15 C 0.196 3.804 16 O -0.403 6.403 17 C -0.602 4.602 18 H 0.067 0.933 19 C -0.163 4.163 20 N -0.544 5.544 21 Si 0.785 3.215 22 H -0.202 1.202 23 H -0.204 1.204 24 H -0.198 1.198 25 C 0.005 3.995 26 H 0.078 0.922 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.047 0.953 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.231 0.769 45 H 0.082 0.918 46 H 0.054 0.946 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.303 1.641 -18.803 19.015 hybrid contribution 0.028 -0.108 2.137 2.140 sum -2.275 1.532 -16.667 16.891 Atomic orbital electron populations 1.21729 0.91105 1.02325 1.04242 1.21436 0.98647 1.00965 0.91119 0.87552 1.21627 0.94479 1.00444 0.96082 1.21783 0.95661 0.96583 0.97580 1.22482 0.98726 0.95106 0.99327 1.22511 0.97242 0.99058 0.97565 1.22338 1.00126 0.95425 0.97564 1.22183 0.99887 0.97842 0.95842 1.21235 0.76166 0.87007 0.84190 1.90615 1.56473 1.16424 1.84075 1.48785 1.65867 1.08792 1.11057 1.22501 1.02147 0.78833 0.98168 1.23084 1.00304 1.00547 0.92484 1.19587 0.79618 0.89593 0.91598 1.86116 1.27483 1.52033 1.74716 1.21749 1.42409 0.99868 0.96166 0.93302 1.25565 0.94108 0.94505 1.02085 1.69696 1.45119 1.04821 1.34774 0.85495 0.78216 0.78174 0.79633 1.20232 1.20381 1.19818 1.21745 0.97557 0.96679 0.83515 0.92180 0.87991 0.93390 0.92632 0.87742 0.95320 0.89268 0.93166 0.92955 0.89995 0.91434 0.90044 0.93575 0.90791 0.88100 0.91318 0.92232 0.90244 0.76885 0.91792 0.94607 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.18 71.99 0.66 -2.20 16 2 C -0.10 -2.54 2.17 -11.54 -0.03 -2.57 16 3 H 0.11 2.32 6.04 -2.39 -0.01 2.30 16 4 C -0.09 -2.02 3.57 30.59 0.11 -1.91 16 5 C -0.10 -2.40 2.82 -10.07 -0.03 -2.43 16 6 C -0.12 -2.40 5.49 31.67 0.17 -2.23 16 7 C -0.13 -2.27 6.91 31.88 0.22 -2.05 16 8 C -0.12 -1.92 6.83 31.67 0.22 -1.71 16 9 C -0.12 -2.53 6.46 31.32 0.20 -2.33 16 10 C 0.52 19.48 5.77 87.66 0.51 19.99 16 11 O -0.59 -26.81 16.35 -3.04 -0.05 -26.86 16 12 N -0.61 -24.36 3.33 -811.76 -2.70 -27.06 16 13 C 0.11 3.61 6.32 86.86 0.55 4.16 16 14 C -0.13 -5.30 5.57 31.99 0.18 -5.12 16 15 C 0.24 11.65 0.85 -10.35 -0.01 11.64 16 16 O -0.59 -30.66 13.06 -148.98 -1.95 -32.61 16 17 C -0.56 -30.27 8.22 25.60 0.21 -30.06 16 18 H 0.05 2.69 7.56 -2.91 -0.02 2.67 16 19 C 0.04 2.00 5.29 84.65 0.45 2.44 16 20 N -0.90 -45.92 10.69 21.45 0.23 -45.69 16 21 Si 0.96 41.50 29.54 68.60 2.03 43.52 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 C 0.13 6.12 6.23 86.73 0.54 6.66 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.49 7.69 -2.39 -0.02 1.47 16 30 H 0.10 1.65 7.99 -2.39 -0.02 1.63 16 31 H 0.03 0.95 7.08 -2.39 -0.02 0.94 16 32 H 0.09 1.40 7.75 -2.39 -0.02 1.38 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.07 1.39 7.67 -2.39 -0.02 1.37 16 40 H 0.10 2.67 7.27 -2.39 -0.02 2.65 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.06 2.57 8.04 -2.39 -0.02 2.55 16 43 H 0.08 3.46 7.64 -2.39 -0.02 3.44 16 44 H 0.38 19.52 7.28 -74.05 -0.54 18.98 16 45 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 46 H 0.04 1.83 8.07 -2.39 -0.02 1.81 16 47 H 0.06 2.74 7.66 -2.39 -0.02 2.72 16 Total: -1.00 -62.83 363.39 1.91 -60.93 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: 0.40 Total: 35.49 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 3.95 Total: -7.72 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -2.47 Total: -72.75 kcal Atomic # 8 Polarization: -57.47 SS G_CDS: -2.00 Total: -59.47 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -62.83 1.91 -60.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.119 kcal (2) G-P(sol) polarization free energy of solvation -62.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds