Wall clock time and date at job start Tue Mar 31 2020 07:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47101 * 2 1 4 4 C 1.52998 * 109.47311 * 239.99322 * 2 1 3 5 5 C 1.53004 * 109.46624 * 65.00375 * 4 2 1 6 6 C 1.54270 * 110.48468 * 185.00074 * 5 4 2 7 7 C 1.53869 * 106.63967 * 217.73631 * 6 5 4 8 8 C 1.54268 * 106.60115 * 359.97438 * 7 6 5 9 9 C 1.54895 * 104.19476 * 23.60777 * 8 7 6 10 10 C 1.50703 * 109.46568 * 119.99732 * 2 1 3 11 11 O 1.21292 * 119.99570 * 120.00178 * 10 2 1 12 12 N 1.34774 * 120.00575 * 299.99503 * 10 2 1 13 13 C 1.47426 * 125.64413 * 0.03103 * 12 10 2 14 14 C 1.54901 * 104.83215 * 204.08842 * 13 12 10 15 15 C 1.55156 * 101.58553 * 322.98951 * 14 13 12 16 16 O 1.42901 * 110.72114 * 277.14467 * 15 14 13 17 17 C 1.50696 * 110.72599 * 154.04136 * 15 14 13 18 18 H 1.08002 * 120.00447 * 241.46150 * 17 15 14 19 19 C 1.37872 * 119.99829 * 61.45259 * 17 15 14 20 20 N 1.31514 * 120.00193 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 120.00086 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47246 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47559 * 120.00212 * 21 19 17 24 24 H 1.48504 * 109.47269 * 240.00518 * 21 19 17 25 25 C 1.47013 * 125.65282 * 179.71916 * 12 10 2 26 26 H 1.09000 * 109.46748 * 60.00136 * 1 2 3 27 27 H 1.08998 * 109.47101 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47189 * 300.00279 * 1 2 3 29 29 H 1.09002 * 109.47155 * 305.00707 * 4 2 1 30 30 H 1.08997 * 109.47231 * 185.00049 * 4 2 1 31 31 H 1.08997 * 110.53944 * 307.61164 * 5 4 2 32 32 H 1.09002 * 110.03399 * 98.42629 * 6 5 4 33 33 H 1.08995 * 110.02943 * 337.04529 * 6 5 4 34 34 H 1.08999 * 110.03405 * 119.26051 * 7 6 5 35 35 H 1.08996 * 110.03529 * 240.68999 * 7 6 5 36 36 H 1.08997 * 110.48788 * 142.28685 * 8 7 6 37 37 H 1.09000 * 110.48806 * 264.79985 * 8 7 6 38 38 H 1.09001 * 110.75082 * 80.37254 * 9 8 7 39 39 H 1.08991 * 110.75596 * 203.55944 * 9 8 7 40 40 H 1.08998 * 110.36775 * 322.92925 * 13 12 10 41 41 H 1.08999 * 110.36679 * 85.13909 * 13 12 10 42 42 H 1.09003 * 111.00602 * 81.06825 * 14 13 12 43 43 H 1.09002 * 111.00870 * 204.91601 * 14 13 12 44 44 H 0.96703 * 113.99479 * 298.53574 * 16 15 14 45 45 H 0.97005 * 120.00265 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.88174 * 298.39806 * 25 12 10 47 47 H 1.09000 * 109.88358 * 59.55827 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6353 0.0688 -2.4953 6 6 2.0285 -0.7002 -3.7735 7 6 2.5038 0.3510 -4.7916 8 6 2.3825 1.7233 -4.0973 9 6 2.4392 1.3905 -2.5856 10 6 2.0322 -0.7104 1.2306 11 8 2.7295 -1.6966 1.1193 12 7 1.7067 -0.2499 2.4547 13 6 0.8705 0.9318 2.7337 14 6 1.2942 1.3917 4.1509 15 6 1.5385 0.0331 4.8593 16 8 0.3091 -0.5159 5.3379 17 6 2.5253 0.1897 5.9874 18 1 3.4610 -0.3491 5.9652 19 6 2.2337 1.0211 7.0479 20 7 1.0941 1.6770 7.0752 21 14 3.4571 1.2159 8.4459 22 1 4.6530 0.3773 8.1776 23 1 3.8652 2.6398 8.5519 24 1 2.8261 0.7857 9.7195 25 6 2.1212 -0.8464 3.7328 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6053 -1.7199 -1.2950 30 1 3.1263 -0.7996 -1.2054 31 1 0.5648 0.2735 -2.4873 32 1 1.1652 -1.2372 -4.1667 33 1 2.8352 -1.3999 -3.5550 34 1 3.5414 0.1621 -5.0666 35 1 1.8712 0.3244 -5.6788 36 1 3.2158 2.3676 -4.3776 37 1 1.4338 2.1964 -4.3504 38 1 3.4689 1.2384 -2.2620 39 1 1.9635 2.1763 -1.9990 40 1 1.0689 1.7175 2.0047 41 1 -0.1853 0.6611 2.7207 42 1 2.2094 1.9825 4.1126 43 1 0.4925 1.9473 4.6374 44 1 -0.1398 0.0366 5.9925 45 1 0.8887 2.2617 7.8215 46 1 1.7307 -1.8610 3.8123 47 1 3.2091 -0.8595 3.8002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:39 Heat of formation + Delta-G solvation = -132.418599 kcal Electronic energy + Delta-G solvation = -24843.081439 eV Core-core repulsion = 21409.560420 eV Total energy + Delta-G solvation = -3433.521019 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34679 -39.54949 -38.77362 -36.16509 -35.33924 -34.21636 -31.57367 -30.54822 -29.76162 -29.43843 -27.16249 -26.58514 -24.52195 -23.00921 -21.59582 -21.18457 -20.46894 -19.96044 -19.16065 -17.99368 -17.03141 -16.95335 -16.75990 -16.48235 -16.06230 -15.75163 -15.37882 -14.94872 -14.76918 -14.27839 -14.11804 -13.94520 -13.89787 -13.54091 -13.38707 -13.24154 -13.21440 -12.86375 -12.63658 -12.45064 -12.34520 -12.26241 -12.10925 -12.02047 -11.96448 -11.80793 -11.56507 -11.36167 -11.33050 -11.26862 -11.13381 -10.75655 -10.58736 -10.14460 -9.61765 -8.25645 -6.39714 1.39132 1.43683 1.53453 1.63272 2.05221 2.39246 2.99700 3.47103 3.64177 3.80595 3.84311 3.90809 3.99658 4.08442 4.09310 4.26769 4.35914 4.45019 4.54409 4.57582 4.62484 4.63832 4.68231 4.70860 4.82403 4.88009 4.90557 4.96573 4.98138 5.01963 5.16333 5.16569 5.18332 5.23374 5.27785 5.32150 5.37779 5.44264 5.46652 5.53169 5.56378 5.63680 5.75707 6.07806 6.59765 6.66668 7.15531 7.30409 7.40097 8.80412 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.030814 B = 0.003134 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.470944 B = 8932.263913 C = 9004.376289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 H 0.113 0.887 4 C -0.084 4.084 5 C -0.087 4.087 6 C -0.124 4.124 7 C -0.124 4.124 8 C -0.123 4.123 9 C -0.125 4.125 10 C 0.516 3.484 11 O -0.597 6.597 12 N -0.610 5.610 13 C 0.105 3.895 14 C -0.126 4.126 15 C 0.236 3.764 16 O -0.593 6.593 17 C -0.563 4.563 18 H 0.047 0.953 19 C 0.039 3.961 20 N -0.903 5.903 21 Si 0.958 3.042 22 H -0.278 1.278 23 H -0.274 1.274 24 H -0.278 1.278 25 C 0.128 3.872 26 H 0.098 0.902 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.380 0.620 45 H 0.272 0.728 46 H 0.039 0.961 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.893 4.366 -19.456 20.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 H 0.131 0.869 4 C -0.122 4.122 5 C -0.105 4.105 6 C -0.161 4.161 7 C -0.162 4.162 8 C -0.160 4.160 9 C -0.163 4.163 10 C 0.307 3.693 11 O -0.479 6.479 12 N -0.342 5.342 13 C -0.016 4.016 14 C -0.165 4.165 15 C 0.196 3.804 16 O -0.401 6.401 17 C -0.601 4.601 18 H 0.066 0.934 19 C -0.163 4.163 20 N -0.542 5.542 21 Si 0.784 3.216 22 H -0.203 1.203 23 H -0.199 1.199 24 H -0.203 1.203 25 C 0.004 3.996 26 H 0.116 0.884 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.230 0.770 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.460 3.470 -19.906 20.356 hybrid contribution 0.769 0.109 1.762 1.926 sum -1.692 3.579 -18.144 18.571 Atomic orbital electron populations 1.21975 0.91394 1.02687 1.04459 1.21295 0.98849 1.00903 0.90407 0.86882 1.21366 1.00217 0.98382 0.92231 1.22068 1.00874 0.94855 0.92689 1.22209 1.00920 0.98025 0.94975 1.22134 1.01167 0.94653 0.98235 1.22349 1.02228 0.96851 0.94573 1.22642 0.99823 0.96862 0.96946 1.21352 0.79351 0.84173 0.84408 1.90625 1.41123 1.29114 1.87027 1.48727 1.50692 1.29841 1.04956 1.22619 0.94492 0.86683 0.97815 1.23096 1.01251 0.98578 0.93581 1.19594 0.82692 0.88572 0.89573 1.86128 1.38461 1.52574 1.62979 1.21724 1.03918 1.27785 1.06700 0.93429 1.25554 0.97130 0.93937 0.99670 1.69746 1.23235 1.28770 1.32433 0.85514 0.79067 0.77959 0.79075 1.20315 1.19924 1.20338 1.21756 0.98051 0.96508 0.83247 0.88353 0.93317 0.91302 0.92765 0.93133 0.88988 0.91276 0.92869 0.92244 0.91078 0.91524 0.90765 0.92568 0.90635 0.88170 0.90575 0.92536 0.90013 0.77050 0.91851 0.94236 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.78 71.98 0.63 -2.43 16 2 C -0.09 -2.36 2.01 -11.54 -0.02 -2.39 16 3 H 0.11 2.45 7.06 -2.39 -0.02 2.43 16 4 C -0.08 -2.01 3.38 30.60 0.10 -1.91 16 5 C -0.09 -1.48 2.73 -9.69 -0.03 -1.51 16 6 C -0.12 -2.02 6.37 31.32 0.20 -1.82 16 7 C -0.12 -1.73 6.80 31.32 0.21 -1.51 16 8 C -0.12 -1.63 6.83 31.67 0.22 -1.42 16 9 C -0.13 -2.00 5.65 31.91 0.18 -1.82 16 10 C 0.52 19.16 7.21 87.66 0.63 19.79 16 11 O -0.60 -26.95 16.25 -3.07 -0.05 -27.00 16 12 N -0.61 -23.84 3.32 -811.79 -2.70 -26.54 16 13 C 0.11 3.52 5.13 86.85 0.45 3.97 16 14 C -0.13 -5.29 5.47 31.98 0.18 -5.11 16 15 C 0.24 11.48 0.84 -10.35 -0.01 11.47 16 16 O -0.59 -29.89 13.06 -148.98 -1.95 -31.83 16 17 C -0.56 -30.04 8.23 25.60 0.21 -29.83 16 18 H 0.05 2.62 7.58 -2.91 -0.02 2.60 16 19 C 0.04 1.98 5.28 84.65 0.45 2.43 16 20 N -0.90 -45.41 10.67 21.45 0.23 -45.18 16 21 Si 0.96 41.38 29.54 68.60 2.03 43.40 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 25 C 0.13 6.00 6.23 86.74 0.54 6.54 16 26 H 0.10 1.42 6.43 -2.39 -0.02 1.40 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.45 4.99 -2.39 -0.01 1.44 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.41 7.83 -2.39 -0.02 1.39 16 31 H 0.09 1.34 6.32 -2.39 -0.02 1.33 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 0.99 7.84 -2.39 -0.02 0.97 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 1.04 7.97 -2.39 -0.02 1.02 16 39 H 0.07 1.07 7.95 -2.39 -0.02 1.05 16 40 H 0.10 2.59 7.36 -2.39 -0.02 2.57 16 41 H 0.08 2.41 7.07 -2.39 -0.02 2.39 16 42 H 0.06 2.45 8.04 -2.39 -0.02 2.43 16 43 H 0.08 3.52 7.53 -2.39 -0.02 3.50 16 44 H 0.38 19.00 7.46 -74.06 -0.55 18.45 16 45 H 0.27 12.95 8.31 -92.70 -0.77 12.18 16 46 H 0.04 1.97 8.07 -2.39 -0.02 1.95 16 47 H 0.05 2.67 7.67 -2.39 -0.02 2.65 16 Total: -1.00 -61.36 357.57 1.90 -59.46 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.40 Total: 33.25 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 3.94 Total: -5.56 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -2.47 Total: -71.72 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -2.00 Total: -58.83 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Total: -61.36 1.90 -59.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.954 kcal (2) G-P(sol) polarization free energy of solvation -61.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds