Wall clock time and date at job start Tue Mar 31 2020 07:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47130 * 2 1 4 4 C 1.53003 * 109.47033 * 119.99850 * 2 1 3 5 5 C 1.52998 * 109.47275 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47432 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.47253 * 59.99883 * 5 4 2 8 8 O 1.21289 * 120.00020 * 300.04408 * 7 5 4 9 9 N 1.34780 * 120.00341 * 120.04736 * 7 5 4 10 10 C 1.47022 * 125.64130 * 5.04358 * 9 7 5 11 11 C 1.54334 * 107.26811 * 181.02615 * 10 9 7 12 12 C 1.55162 * 102.94035 * 22.19301 * 11 10 9 13 13 O 1.42902 * 111.00186 * 82.61104 * 12 11 10 14 14 C 1.50703 * 111.00063 * 206.42262 * 12 11 10 15 15 H 1.08003 * 119.99600 * 118.54800 * 14 12 11 16 16 C 1.37867 * 120.00387 * 298.54619 * 14 12 11 17 17 N 1.31521 * 120.00052 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00176 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.46907 * 90.00244 * 18 16 14 20 20 H 1.48506 * 109.47200 * 210.00254 * 18 16 14 21 21 H 1.48500 * 109.47220 * 329.99927 * 18 16 14 22 22 C 1.47424 * 125.64965 * 184.73996 * 9 7 5 23 23 C 1.53005 * 109.46891 * 299.99999 * 5 4 2 24 24 C 1.53003 * 109.47160 * 59.99931 * 23 5 4 25 25 H 1.08999 * 109.46755 * 59.99798 * 24 23 5 26 26 C 1.52998 * 109.47012 * 180.02562 * 24 23 5 27 27 C 1.52991 * 109.47474 * 240.00037 * 2 1 3 28 28 H 1.08999 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47458 * 300.00064 * 1 2 3 30 30 H 1.09006 * 109.46803 * 60.00351 * 1 2 3 31 31 H 1.09004 * 109.46884 * 299.99942 * 4 2 1 32 32 H 1.09002 * 109.47040 * 60.00095 * 4 2 1 33 33 H 1.08994 * 109.88533 * 300.43939 * 10 9 7 34 34 H 1.08999 * 109.88396 * 61.46207 * 10 9 7 35 35 H 1.08989 * 110.72034 * 140.55560 * 11 10 9 36 36 H 1.09002 * 110.71951 * 263.65458 * 11 10 9 37 37 H 0.96704 * 113.99745 * 61.45266 * 13 12 11 38 38 H 0.96997 * 119.99934 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.36325 * 274.74370 * 22 9 7 40 40 H 1.08999 * 110.36738 * 37.07052 * 22 9 7 41 41 H 1.09002 * 109.46961 * 300.00106 * 23 5 4 42 42 H 1.09002 * 109.46630 * 180.02562 * 23 5 4 43 43 H 1.08993 * 109.46799 * 180.02562 * 26 24 23 44 44 H 1.09007 * 109.46876 * 299.99772 * 26 24 23 45 45 H 1.08993 * 109.47069 * 59.99542 * 26 24 23 46 46 H 1.08999 * 109.47402 * 300.00146 * 27 2 1 47 47 H 1.09006 * 109.47423 * 59.99990 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 1 3.9333 -1.2341 2.1399 7 6 4.0718 0.7002 1.2499 8 8 3.7781 1.4473 0.3407 9 7 4.8471 1.1410 2.2605 10 6 5.3632 0.3197 3.3653 11 6 6.1745 1.2524 4.2893 12 6 5.5995 2.6551 3.9586 13 8 4.3930 2.8983 4.6848 14 6 6.6166 3.7335 4.2300 15 1 6.9653 4.3621 3.4239 16 6 7.1020 3.9177 5.5072 17 7 6.6777 3.1519 6.4888 18 14 8.3622 5.2549 5.8437 19 1 7.6630 6.5170 6.1946 20 1 9.2335 4.8412 6.9730 21 1 9.1922 5.4694 4.6311 22 6 5.3231 2.5250 2.4377 23 6 4.0805 -1.4417 0.0004 24 6 3.5705 -0.7204 -1.2489 25 1 3.9335 0.3073 -1.2486 26 6 4.0805 -1.4417 -2.4981 27 6 2.0401 -0.7212 -1.2491 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6766 -0.2073 2.1393 32 1 1.6767 -1.7489 1.2493 33 1 4.5339 -0.1205 3.9189 34 1 6.0064 -0.4679 2.9727 35 1 6.0032 1.0024 5.3362 36 1 7.2370 1.2023 4.0512 37 1 4.5037 2.8901 5.6454 38 1 7.0190 3.2818 7.3874 39 1 6.2382 2.6871 1.8681 40 1 4.5535 3.2331 2.1305 41 1 3.7174 -2.4695 0.0002 42 1 5.1705 -1.4417 0.0009 43 1 3.7175 -0.9277 -3.3880 44 1 5.1706 -1.4417 -2.4980 45 1 3.7172 -2.4694 -2.4980 46 1 1.6768 -1.7488 -1.2492 47 1 1.6768 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:57 Heat of formation + Delta-G solvation = -113.152799 kcal Electronic energy + Delta-G solvation = -25622.382328 eV Core-core repulsion = 22189.696736 eV Total energy + Delta-G solvation = -3432.685591 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41771 -38.27402 -36.58221 -34.28737 -33.35415 -32.23974 -32.04325 -29.61828 -28.30471 -26.53813 -26.26455 -25.36640 -23.12463 -21.76980 -20.40350 -20.23990 -19.62005 -18.30696 -17.17143 -16.40483 -15.54864 -15.22988 -14.97787 -14.83612 -14.48302 -14.20058 -13.85850 -13.70775 -13.32025 -13.02543 -12.65628 -12.41893 -12.31721 -12.16431 -12.00571 -11.75440 -11.73467 -11.62616 -11.58759 -11.35327 -11.31551 -11.07994 -10.91343 -10.66132 -10.51909 -10.48193 -10.44932 -10.03077 -9.90975 -9.87449 -9.39334 -8.83565 -8.67595 -8.23399 -7.92222 -6.30102 -4.38124 3.09780 3.19171 3.26550 3.29784 3.60398 4.25636 4.72745 4.75743 4.83694 4.96634 5.07029 5.18413 5.26042 5.42006 5.42624 5.55565 5.61478 5.65976 5.69528 5.72510 5.74169 5.84434 5.87275 5.89227 5.94592 5.96265 5.98541 6.02152 6.06516 6.18014 6.29662 6.34445 6.42262 6.43908 6.48859 6.64582 6.65851 6.81307 6.89588 7.00367 7.28393 7.33082 7.71718 8.01006 8.19895 8.64126 8.72627 9.29009 9.37754 10.77276 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.003806 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.217017 B = 7355.035342 C = 7601.298730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.103 0.897 4 C -0.095 4.095 5 C -0.105 4.105 6 H 0.084 0.916 7 C 0.529 3.471 8 O -0.545 6.545 9 N -0.607 5.607 10 C 0.099 3.901 11 C -0.136 4.136 12 C 0.248 3.752 13 O -0.582 6.582 14 C -0.535 4.535 15 H 0.064 0.936 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.902 3.098 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.120 3.880 23 C -0.095 4.095 24 C -0.108 4.108 25 H 0.102 0.898 26 C -0.144 4.144 27 C -0.095 4.095 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.380 0.620 38 H 0.268 0.732 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.913 -11.043 -9.090 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.121 0.879 4 C -0.133 4.133 5 C -0.127 4.127 6 H 0.102 0.898 7 C 0.318 3.682 8 O -0.425 6.425 9 N -0.339 5.339 10 C -0.024 4.024 11 C -0.174 4.174 12 C 0.208 3.792 13 O -0.391 6.391 14 C -0.574 4.574 15 H 0.082 0.918 16 C -0.129 4.129 17 N -0.535 5.535 18 Si 0.729 3.271 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.001 4.001 23 C -0.133 4.133 24 C -0.126 4.126 25 H 0.120 0.880 26 C -0.202 4.202 27 C -0.132 4.132 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.230 0.770 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.329 -10.680 -10.034 15.962 hybrid contribution 1.048 0.477 1.073 1.574 sum -5.282 -10.202 -8.961 14.570 Atomic orbital electron populations 1.21818 0.96003 1.00966 1.01391 1.21422 0.94453 1.02725 0.94047 0.87935 1.21412 0.92421 1.00786 0.98706 1.21283 0.97513 0.93728 1.00147 0.89782 1.20136 0.77784 0.89369 0.80915 1.90502 1.58523 1.58210 1.35238 1.48696 1.49091 1.11831 1.24237 1.22181 0.97379 0.94474 0.88399 1.23172 0.98580 0.96776 0.98917 1.19642 0.82906 0.91022 0.85658 1.86138 1.34676 1.94882 1.23378 1.21456 1.23496 1.17540 0.94890 0.91761 1.24978 0.96178 0.95865 0.95902 1.69718 1.44152 1.38559 1.01040 0.86430 0.80906 0.81723 0.78010 1.20396 1.21060 1.19705 1.22386 0.98501 0.81475 0.97761 1.21422 1.00140 0.98493 0.93258 1.21429 0.95722 1.02198 0.93298 0.87965 1.21818 1.00643 0.99882 0.97814 1.21480 0.94977 0.99336 0.97436 0.93367 0.92955 0.93014 0.91846 0.91480 0.92493 0.92978 0.89580 0.91416 0.77021 0.92247 0.91203 0.91315 0.91476 0.92096 0.92989 0.93087 0.93333 0.93081 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 2 C -0.11 -1.46 2.42 -90.62 -0.22 -1.68 16 3 H 0.10 1.73 5.51 -51.93 -0.29 1.44 16 4 C -0.10 -1.25 4.72 -26.73 -0.13 -1.38 16 5 C -0.11 -1.48 2.91 -91.77 -0.27 -1.75 16 6 H 0.08 1.10 6.55 -51.93 -0.34 0.76 16 7 C 0.53 9.61 6.53 -10.99 -0.07 9.54 16 8 O -0.54 -11.02 11.64 5.55 0.06 -10.96 16 9 N -0.61 -11.84 3.32 -170.38 -0.57 -12.40 16 10 C 0.10 1.76 5.88 -3.06 -0.02 1.74 16 11 C -0.14 -2.87 5.37 -24.89 -0.13 -3.01 16 12 C 0.25 5.91 0.87 -89.50 -0.08 5.83 16 13 O -0.58 -14.63 13.17 -35.23 -0.46 -15.09 16 14 C -0.54 -13.84 8.27 -34.44 -0.28 -14.12 16 15 H 0.06 1.66 7.79 -52.48 -0.41 1.26 16 16 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 17 N -0.90 -22.74 10.76 55.43 0.60 -22.14 16 18 Si 0.90 20.03 29.54 -169.99 -5.02 15.00 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.12 2.68 6.08 -2.41 -0.01 2.66 16 23 C -0.10 -1.18 4.72 -26.73 -0.13 -1.31 16 24 C -0.11 -1.40 2.43 -90.60 -0.22 -1.62 16 25 H 0.10 1.66 5.51 -51.93 -0.29 1.37 16 26 C -0.14 -1.56 9.19 37.16 0.34 -1.21 16 27 C -0.09 -1.15 4.49 -26.71 -0.12 -1.27 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.96 7.85 -51.93 -0.41 0.55 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.90 7.55 -51.94 -0.39 1.51 16 36 H 0.07 1.45 8.04 -51.93 -0.42 1.04 16 37 H 0.38 9.50 7.57 45.56 0.34 9.85 16 38 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 39 H 0.07 1.52 8.03 -51.93 -0.42 1.10 16 40 H 0.07 1.62 8.09 -51.93 -0.42 1.20 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -26.77 354.76 -8.80 -35.57 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -7.66 Total: 11.79 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.09 Total: -7.12 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.03 Total: -34.54 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.40 Total: -26.05 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -26.77 -8.80 -35.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.582 kcal (2) G-P(sol) polarization free energy of solvation -26.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds