Wall clock time and date at job start Tue Mar 31 2020 07:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47130 * 2 1 4 4 C 1.53003 * 109.47033 * 119.99850 * 2 1 3 5 5 C 1.52998 * 109.47275 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47432 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.47253 * 59.99883 * 5 4 2 8 8 O 1.21289 * 120.00020 * 300.04408 * 7 5 4 9 9 N 1.34780 * 120.00341 * 120.04736 * 7 5 4 10 10 C 1.47022 * 125.64130 * 5.04358 * 9 7 5 11 11 C 1.54334 * 107.26811 * 181.02615 * 10 9 7 12 12 C 1.55162 * 102.94035 * 22.19301 * 11 10 9 13 13 O 1.42902 * 111.00186 * 82.61104 * 12 11 10 14 14 C 1.50703 * 111.00063 * 206.42262 * 12 11 10 15 15 H 1.08003 * 119.99600 * 118.54800 * 14 12 11 16 16 C 1.37867 * 120.00387 * 298.54619 * 14 12 11 17 17 N 1.31521 * 120.00052 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00176 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.46907 * 90.00244 * 18 16 14 20 20 H 1.48506 * 109.47200 * 210.00254 * 18 16 14 21 21 H 1.48500 * 109.47220 * 329.99927 * 18 16 14 22 22 C 1.47424 * 125.64965 * 184.73996 * 9 7 5 23 23 C 1.53005 * 109.46891 * 299.99999 * 5 4 2 24 24 C 1.53003 * 109.47160 * 59.99931 * 23 5 4 25 25 H 1.08999 * 109.46755 * 59.99798 * 24 23 5 26 26 C 1.52998 * 109.47012 * 180.02562 * 24 23 5 27 27 C 1.52991 * 109.47474 * 240.00037 * 2 1 3 28 28 H 1.08999 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47458 * 300.00064 * 1 2 3 30 30 H 1.09006 * 109.46803 * 60.00351 * 1 2 3 31 31 H 1.09004 * 109.46884 * 299.99942 * 4 2 1 32 32 H 1.09002 * 109.47040 * 60.00095 * 4 2 1 33 33 H 1.08994 * 109.88533 * 300.43939 * 10 9 7 34 34 H 1.08999 * 109.88396 * 61.46207 * 10 9 7 35 35 H 1.08989 * 110.72034 * 140.55560 * 11 10 9 36 36 H 1.09002 * 110.71951 * 263.65458 * 11 10 9 37 37 H 0.96704 * 113.99745 * 61.45266 * 13 12 11 38 38 H 0.96997 * 119.99934 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.36325 * 274.74370 * 22 9 7 40 40 H 1.08999 * 110.36738 * 37.07052 * 22 9 7 41 41 H 1.09002 * 109.46961 * 300.00106 * 23 5 4 42 42 H 1.09002 * 109.46630 * 180.02562 * 23 5 4 43 43 H 1.08993 * 109.46799 * 180.02562 * 26 24 23 44 44 H 1.09007 * 109.46876 * 299.99772 * 26 24 23 45 45 H 1.08993 * 109.47069 * 59.99542 * 26 24 23 46 46 H 1.08999 * 109.47402 * 300.00146 * 27 2 1 47 47 H 1.09006 * 109.47423 * 59.99990 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 1 3.9333 -1.2341 2.1399 7 6 4.0718 0.7002 1.2499 8 8 3.7781 1.4473 0.3407 9 7 4.8471 1.1410 2.2605 10 6 5.3632 0.3197 3.3653 11 6 6.1745 1.2524 4.2893 12 6 5.5995 2.6551 3.9586 13 8 4.3930 2.8983 4.6848 14 6 6.6166 3.7335 4.2300 15 1 6.9653 4.3621 3.4239 16 6 7.1020 3.9177 5.5072 17 7 6.6777 3.1519 6.4888 18 14 8.3622 5.2549 5.8437 19 1 7.6630 6.5170 6.1946 20 1 9.2335 4.8412 6.9730 21 1 9.1922 5.4694 4.6311 22 6 5.3231 2.5250 2.4377 23 6 4.0805 -1.4417 0.0004 24 6 3.5705 -0.7204 -1.2489 25 1 3.9335 0.3073 -1.2486 26 6 4.0805 -1.4417 -2.4981 27 6 2.0401 -0.7212 -1.2491 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6766 -0.2073 2.1393 32 1 1.6767 -1.7489 1.2493 33 1 4.5339 -0.1205 3.9189 34 1 6.0064 -0.4679 2.9727 35 1 6.0032 1.0024 5.3362 36 1 7.2370 1.2023 4.0512 37 1 4.5037 2.8901 5.6454 38 1 7.0190 3.2818 7.3874 39 1 6.2382 2.6871 1.8681 40 1 4.5535 3.2331 2.1305 41 1 3.7174 -2.4695 0.0002 42 1 5.1705 -1.4417 0.0009 43 1 3.7175 -0.9277 -3.3880 44 1 5.1706 -1.4417 -2.4980 45 1 3.7172 -2.4694 -2.4980 46 1 1.6768 -1.7488 -1.2492 47 1 1.6768 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:56 Heat of formation + Delta-G solvation = -128.585076 kcal Electronic energy + Delta-G solvation = -25623.051521 eV Core-core repulsion = 22189.696736 eV Total energy + Delta-G solvation = -3433.354785 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 295.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71780 -39.78148 -38.03114 -36.04056 -34.31006 -34.22447 -33.20084 -31.25827 -30.01117 -27.45974 -27.20343 -27.15345 -24.59281 -23.14862 -21.60257 -21.37943 -21.17404 -19.77034 -19.05370 -17.83854 -17.01217 -16.85256 -16.53306 -16.05720 -15.88505 -15.73787 -15.07439 -14.93411 -14.69480 -14.46424 -14.00275 -13.82809 -13.62580 -13.36615 -13.24368 -13.14257 -13.00224 -12.96303 -12.89693 -12.70395 -12.61842 -12.59655 -12.47176 -12.25676 -12.04958 -11.86453 -11.62116 -11.49947 -11.25196 -10.89011 -10.86415 -10.66279 -10.21470 -10.08678 -9.47634 -8.24637 -6.39636 1.41104 1.44349 1.52733 1.69766 2.12732 2.40099 3.00169 3.52925 3.73916 3.80841 3.82941 3.95914 4.08414 4.21212 4.22856 4.35500 4.36638 4.45248 4.46677 4.59620 4.65337 4.66833 4.72692 4.82034 4.86253 4.88254 4.92890 4.94582 4.98996 5.01735 5.07211 5.15204 5.16817 5.28521 5.31815 5.38010 5.44479 5.49381 5.53158 5.53994 5.60258 5.76576 5.79522 6.08834 6.63068 6.73005 7.27787 7.30870 7.39283 8.81150 Molecular weight = 295.19amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.003806 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.217017 B = 7355.035342 C = 7601.298730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 H 0.059 0.941 4 C -0.094 4.094 5 C -0.099 4.099 6 H 0.101 0.899 7 C 0.520 3.480 8 O -0.571 6.571 9 N -0.614 5.614 10 C 0.106 3.894 11 C -0.126 4.126 12 C 0.235 3.765 13 O -0.592 6.592 14 C -0.564 4.564 15 H 0.052 0.948 16 C 0.039 3.961 17 N -0.905 5.905 18 Si 0.958 3.042 19 H -0.280 1.280 20 H -0.276 1.276 21 H -0.273 1.273 22 C 0.127 3.873 23 C -0.092 4.092 24 C -0.111 4.111 25 H 0.061 0.939 26 C -0.139 4.139 27 C -0.090 4.090 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.377 0.623 38 H 0.271 0.729 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.100 0.900 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 -13.777 -9.356 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 H 0.077 0.923 4 C -0.132 4.132 5 C -0.120 4.120 6 H 0.119 0.881 7 C 0.311 3.689 8 O -0.451 6.451 9 N -0.347 5.347 10 C -0.016 4.016 11 C -0.164 4.164 12 C 0.195 3.805 13 O -0.401 6.401 14 C -0.603 4.603 15 H 0.070 0.930 16 C -0.162 4.162 17 N -0.544 5.544 18 Si 0.783 3.217 19 H -0.206 1.206 20 H -0.201 1.201 21 H -0.198 1.198 22 C 0.004 3.996 23 C -0.130 4.130 24 C -0.129 4.129 25 H 0.080 0.920 26 C -0.196 4.196 27 C -0.127 4.127 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.227 0.773 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.118 0.882 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.581 -13.433 -10.305 18.164 hybrid contribution 1.092 1.405 1.125 2.105 sum -5.489 -12.027 -9.180 16.095 Atomic orbital electron populations 1.21777 0.94503 1.02307 1.01159 1.21358 0.95763 1.00565 0.95216 0.92263 1.21458 0.91561 1.02403 0.97731 1.21377 0.98139 0.90543 1.01922 0.88078 1.21097 0.76844 0.91112 0.79860 1.90521 1.58976 1.59503 1.36131 1.48814 1.49929 1.10636 1.25310 1.22187 0.97932 0.93971 0.87512 1.22941 0.98516 0.95848 0.99116 1.19789 0.82244 0.92185 0.86243 1.86126 1.35572 1.95138 1.23241 1.21679 1.24733 1.18667 0.95179 0.92999 1.25570 0.97546 0.97520 0.95607 1.69775 1.44405 1.39023 1.01184 0.85565 0.78936 0.79284 0.77866 1.20569 1.20123 1.19753 1.22095 0.97526 0.83139 0.96846 1.21468 1.00096 0.99657 0.91752 1.21369 0.96347 1.00319 0.94876 0.92050 1.21766 1.00543 1.00709 0.96611 1.21450 0.94346 1.00429 0.96493 0.91118 0.93707 0.92860 0.93290 0.88105 0.90958 0.89673 0.90612 0.92118 0.77341 0.91938 0.91574 0.93968 0.88208 0.92305 0.93006 0.93247 0.91234 0.90528 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.19 71.98 0.66 -2.32 16 2 C -0.11 -2.85 2.42 -10.80 -0.03 -2.88 16 3 H 0.06 2.07 5.51 -2.39 -0.01 2.05 16 4 C -0.09 -2.23 4.72 30.59 0.14 -2.09 16 5 C -0.10 -2.55 2.91 -11.54 -0.03 -2.59 16 6 H 0.10 2.28 6.55 -2.39 -0.02 2.27 16 7 C 0.52 18.88 6.53 87.65 0.57 19.46 16 8 O -0.57 -24.01 11.64 -3.06 -0.04 -24.05 16 9 N -0.61 -24.02 3.32 -811.33 -2.70 -26.72 16 10 C 0.11 3.63 5.88 86.73 0.51 4.14 16 11 C -0.13 -5.30 5.37 31.79 0.17 -5.13 16 12 C 0.24 11.49 0.87 -10.07 -0.01 11.48 16 13 O -0.59 -30.56 13.17 -148.98 -1.96 -32.52 16 14 C -0.56 -29.92 8.27 25.60 0.21 -29.71 16 15 H 0.05 2.79 7.79 -2.91 -0.02 2.77 16 16 C 0.04 2.00 5.29 84.65 0.45 2.45 16 17 N -0.91 -46.00 10.76 21.44 0.23 -45.77 16 18 Si 0.96 41.19 29.54 68.60 2.03 43.22 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 C 0.13 5.86 6.08 86.93 0.53 6.39 16 23 C -0.09 -2.01 4.72 30.60 0.14 -1.86 16 24 C -0.11 -2.69 2.43 -10.78 -0.03 -2.72 16 25 H 0.06 2.02 5.51 -2.39 -0.01 2.01 16 26 C -0.14 -2.67 9.19 71.98 0.66 -2.01 16 27 C -0.09 -1.99 4.49 30.61 0.14 -1.85 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 2.27 7.85 -2.39 -0.02 2.25 16 34 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.08 3.33 7.55 -2.39 -0.02 3.32 16 36 H 0.06 2.60 8.04 -2.39 -0.02 2.58 16 37 H 0.38 19.34 7.57 -74.05 -0.56 18.78 16 38 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 39 H 0.07 3.03 8.03 -2.39 -0.02 3.01 16 40 H 0.04 2.12 8.09 -2.39 -0.02 2.10 16 41 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 45 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -59.76 354.76 2.04 -57.73 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: 0.38 Total: 37.35 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 4.10 Total: -9.23 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -2.47 Total: -72.49 kcal Atomic # 8 Polarization: -54.57 SS G_CDS: -2.00 Total: -56.57 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -59.76 2.04 -57.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.857 kcal (2) G-P(sol) polarization free energy of solvation -59.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds